Clone BO05054 Report

Search the DGRC for BO05054

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:54
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO05054.pep: validated not full length
Sequenced Size:1660

Clone Sequence Records

BO05054.3prime Sequence

898 bp (767 high quality bases) assembled on 2005-12-02

> BO05054.3prime
ATGGTCTAGAAAGCTTGCTCCCTTGTCCTTCCCAGGACCCACGATCACGC
CCAGCAGGTGCTCCCCCGCCATCAGTCCCGCCGGCTGGTGGGCGTAGTTG
CGGATCTGGTGCAGCGAGATCAGCTGGTTGGGGAACGCGTTCGCGTTGTT
CTGGTTCACGTTCTTGTTCGGGAAGCTGATGGCATCGTAGAGATAGGGCC
GCTGGGCCATCGGGTGGTGGCTCAGCGAGTTCAGGTGCGGTGGCATCGAG
TTTATCGGCGTGAACGCCGAGTTGCTGGTGGTTTTCGTTATTGATGCGGC
GTCATAGGGGCCCACGGCACTGGGGGTCGAGGCAATATCCTCCCGCACCG
GATCGGGCATGCGATGATGGGGCTGCAACTCCGCGCCGTGTCCGTTGCTT
TGGGATCCGTTGGGAGCCGTCGGCTGAGCGTAGTGGGCTTCCATGCTGTG
CTGCGGAGGAGGTTGCTGCTGCGGATGGTGGTGTTGCTGCTGTTGTTGTT
GCTGCTGCTGCTGCTGGGGCGGGACATGTTGCTGCGGCGGGACTCCGTGT
TGCGGATGGTGGTGGTGCGCCTGCTGCTGCTGCTGTTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTGCTGCTGGTGCATCACCT
CCATGGCGTTGGCTGCAGCGGCCGAGTCCGGACTTACCTTTGGCCAGTAG
CCGTTGTCGCTGGGGGCAATCGAGACTGGGGGCAGGCCCAGGTTGTTGCG
CTGATGCTGGGCGGGATTGGGAGGTGGAGGCGGTCCATTTGCCGGGTTGG
CGGATCCGCCGGCAGCTGCCGCGGCCGTTGAATTCGAGTTAAGGTTGTGA
GCCGGGGTGTGATCGGAGAGGGAGTTGGGGGTTGGGGTTCTGGCCGGA

BO05054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32466-PA 2841 rn-RA 2030..2838 827..19 4020 99.8 Minus
CG32466-PB 2079 rn-RB 1268..2076 827..19 4020 99.8 Minus
CG32466-PA 2841 rn-RA 763..824 882..821 285 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RG 5014 CG42277-RG 2778..3586 827..19 4030 99.9 Minus
rn-RE 5014 CG42277-RE 2778..3586 827..19 4030 99.9 Minus
rn-RF 4270 CG42277-RF 2034..2842 827..19 4030 99.9 Minus
rn-RG 5014 CG42277-RG 1496..1572 898..821 350 97.4 Minus
rn-RE 5014 CG42277-RE 1496..1572 898..821 350 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7274995..7275489 333..827 2475 100 Plus
3R 32079331 3R 7274045..7274359 19..333 1560 99.7 Plus
3R 32079331 3R 7300824..7300900 821..898 325 97.4 Plus
X 23542271 X 5611489..5611575 643..557 225 83.9 Minus
3R 32079331 3R 18013332..18013414 639..557 220 84.3 Minus
3L 28110227 3L 3150623..3150714 642..551 205 81.5 Minus
X 23542271 X 21354327..21354390 620..557 185 85.9 Minus
Blast to na_te.dros performed 2015-02-10 17:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 6726..6783 333..276 110 65.5 Minus

BO05054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:16:17 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:26 Download gff for BO05054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32466-PB 1268..2079 18..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:24 Download gff for BO05054.3prime
Subject Subject Range Query Range Percent Splice Strand
rn-RF 753..827 821..897 96 <- Minus
rn-RF 2041..2847 12..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:30 Download gff for BO05054.3prime
Subject Subject Range Query Range Percent Splice Strand
rn-RF 753..827 821..897 96 <- Minus
rn-RF 2041..2847 12..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:30 Download gff for BO05054.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7274040..7274358 12..332 98 <- Plus
3R 7274995..7275485 333..823 100 -> Plus
3R 7300825..7300899 824..897 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:24 Download gff for BO05054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3099762..3100080 12..332 98 <- Plus
arm_3R 3100717..3101207 333..823 100 -> Plus
arm_3R 3126547..3126621 824..897 94   Plus

BO05054.5prime Sequence

961 bp (751 high quality bases) assembled on 2005-12-02

> BO05054.5prime
GAAGTTATCAGTCGACATGATTATGCATGGTACCTGGTACAAGGGACCTC
AGTTGGCGCACCATCCTCACTCGAATCCGCATAACAGTTCGCACGGCCAC
AGTGACTACCACCAGTTCCGCTCGTACCCCTCGTTCGTTGTAACGCCCTA
CCACGATGGCCATGTCCAGGGCCCGGCCACGCCCACTCCATGCACGGCCC
CGCCAACGCCCTGCAACGGTCCAGTTCCAGTTTCAGTTCCAGTTTCGATT
CCCGTCTGCCACACCGGCGGCCAAGGTTCGCCAGTAATTGTCGAGAGCTC
ATTTGCAATCGCCGCCGCCGCCGCTGCAGCGGCTGCTGCCGTCGCCGTCG
GAGGATCCAGTGCCACGCCCCTGCTGCCCAGTCCGCCCATCAAGATCGAG
CAGGTCTTTGGCGAGCCCTCTTCGCTTGGAGCCGTCGTTGAGGATTACGC
GCTGGGACTAGATTGCCCCGTGGAACACACGTTTCGAAAGCCGCACAACA
ACAACGGTTACTCGTGGTCCACCGGCAACAACAACGAGGTTGTCAGTCAT
AGCAGCAACGGCCACACCAACAACCACCCAACAACACCACCCACTCCGCC
CAACGAGGCCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTAATTTGA
ATCAAGCCCAACCCGCATCACAGACGCGTTCAAACTTTGGCAGCTCCATA
AAGTCACCACCATCAGAACCGGACGCGGTCACTGCTGCCACGTGCAAAAG
TCAGGAGAATAACTCCGGCCAGAACCCCACCCCCAACTCCCTCTCCGATC
ACAACCCGGCTCACAAACTTTAACTCGAATTTCACGGCCGCGGCAGCTGC
CGGCGGATCCGCCCAACCGGCCAATGGACCGCCTCCACCTCCCAATCCCG
CCCAGCATCAGCGCAACAACCTGGGCCTGCCCCCAGTCTCCAATGGCCCC
CAGCGAACAAC

BO05054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32466-PA 2841 rn-RA 1..800 17..816 4000 100 Plus
CG32466-PA 2841 rn-RA 2030..2135 835..940 455 97.1 Plus
CG32466-PB 2079 rn-RB 1268..1373 835..940 455 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RG 5014 CG42277-RG 749..1572 17..841 4055 99.5 Plus
rn-RE 5014 CG42277-RE 749..1572 17..841 4055 99.5 Plus
rn-RF 4270 CG42277-RF 476..828 488..841 1700 98.9 Plus
rn-RG 5014 CG42277-RG 2778..2898 835..956 510 95.1 Plus
rn-RE 5014 CG42277-RE 2778..2898 835..956 510 95.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7307857..7308327 487..17 2355 100 Minus
3R 32079331 3R 7300824..7301176 841..488 1675 98.9 Minus
3R 32079331 3R 7275374..7275489 950..835 490 94.8 Minus
Blast to na_te.dros performed on 2015-02-11 23:26:52 has no hits.

BO05054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:18 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32466-PA 1..819 17..836 99   Plus
CG32466-PA 2032..2154 837..961 94   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:28 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32466-PA 1..819 17..836 99 -> Plus
CG32466-PA 2032..2154 837..961 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:59 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1567 17..836 99 -> Plus
rn-RE 2780..2902 837..961 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:48 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1567 17..836 99 -> Plus
rn-RE 2780..2902 837..961 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:48 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7275365..7275487 837..961 94 <- Minus
3R 7300829..7301176 488..836 98 <- Minus
3R 7307857..7308327 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:59 Download gff for BO05054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3101087..3101209 837..961 94 <- Minus
arm_3R 3126551..3126898 488..836 98 <- Minus
arm_3R 3133579..3134049 17..487 100   Minus

BO05054.complete Sequence

1660 bp (1660 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629960

> BO05054.complete
GAAGTTATCAGTCGACATGATTATGCATGGTACCTGGTACAAGGGACCTC
AGTTGGCGCACCATCCTCACTCGAATCCGCATAACAGTTCGCACGGCCAC
AGTGACTACCACCAGTTCCGCTCGTACCCCTCGTTCGTTGTAACGCCCTA
CCACGATGGCCATGTCCAGGGCCCGGCCACGCCCACTCCATGCACGGCCC
CGCCAACGCCCTGCAACGGTCCAGTTCCAGTTTCAGTTCCAGTTTCGATT
CCCGTCTGCCACACCGGCGGCCAAGGTTCGCCAGTAATTGTCGAGAGCTC
ATTTGCAATCGCCGCCGCCGCCGCTGCAGCGGCTGCTGCCGTCGCCGTCG
GAGGATCCAGTGCCACGCCCCTGCTGCCCAGTCCGCCCATCAAGATCGAG
CAGGTCTTTGGCGAGCCCTCTTCGCTTGGAGCCGTCGTTGAGGATTACGC
GCTGGGACTAGATTGCCCCGTGGAACACACGTTTCGAAAGCCGCACAACA
ACAACGGTTACTCGTGGTCCACCGGCAACAACAACGAGGTTGTCAGTCAT
AGCAGCAACGGCCACACCAACAACCACCCAACAACACCACCCACTCCGCC
CAACGAGGCCAGCGCCACCCAAGCGACTTCAGTGTCCGCAATTAATTTGA
ATCAAGCCCAACCCGCATCACAGACGCGTTCAAACTTTGGCAGCTCCATA
AAGTCACCACCATCAGAACCGGACGCGGTCACTGCTGCCACGTGCAAAAG
TCAGGAGAATAACTCCGGCCAGAACCCCACCCCCAACTCCCTCTCCGATC
ACAACCCGGCTCACAACCTTAACTCGAATTCAACGGCCGCGGCAGCTGCC
GGCGGATCCGCCAACCCGGCAAATGGACCGCCTCCACCTCCCAATCCCGC
CCAGCATCAGCGCAACAACCTGGGCCTGCCCCCAGTCTCGATTGCCCCCA
GCGACAACGGCTACTGGCCAAAGGTAAGTCCGGACTCGGCCGCTGCAGCC
AACGCCATGGAGGTGATGCACCAGCAGCAGCAGCAGCAACAACAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGCGCACCACC
ACCATCCGCAACACGGAGTCCCGCCGCAGCAACATGTCCCGCCCCAGCAG
CAGCAGCAGCAACAACAACAGCAGCAACACCACCATCCGCAGCAGCAACC
TCCTCCGCAGCACAGCATGGAAGCCCACTACGCTCAGCCGACGGCTCCCA
ACGGATCCCAAAGCAACGGACACGGCGCGGAGTTGCAGCCCCATCATCGC
ATGCCCGATCCGGTGCGGGAGGATATTGCCTCGACCCCCAGTGCCGTGGG
CCCCTATGACGCCGCATCAATAACGAAAACCACCAGCAACTCGGCGTTCA
CGCCGATAAACTCGATGCCACCGCACCTGAACTCGCTGAGCCACCACCCG
ATGGCCCAGCGGCCCTATCTCTACGATGCCATCAGCTTCCCGAACAAGAA
CGTGAACCAGAACAACGCGAACGCGTTCCCCAACCAGCTGATCTCGCTGC
ACCAGATCCGCAACTACGCCCACCAGCCGGCGGGACTGATGGCGGGGGAG
CACCTGCTGGGCGTGATCGTGGGTCCTGGGAAGGACAAGGGAGCAAGCTT
TCTAGACCAT

BO05054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RG 2859 CG42277-PG 1..824 17..840 4120 100 Plus
rn-RE 2841 CG42277-PE 1..824 17..840 4120 100 Plus
rn-RG 2859 CG42277-PG 2030..2838 834..1642 4030 99.9 Plus
rn-RE 2841 CG42277-PE 2030..2838 834..1642 4030 99.9 Plus
rn-RF 2784 CG42277-PF 1973..2781 834..1642 4030 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
rn-RG 5014 CG42277-RG 749..1572 17..840 4120 100 Plus
rn-RE 5014 CG42277-RE 749..1572 17..840 4120 100 Plus
rn-RG 5014 CG42277-RG 2778..3586 834..1642 4030 99.9 Plus
rn-RE 5014 CG42277-RE 2778..3586 834..1642 4030 99.9 Plus
rn-RF 4270 CG42277-RF 2034..2842 834..1642 4030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7274995..7275489 1328..834 2475 100 Minus
3R 32079331 3R 7307857..7308327 487..17 2355 100 Minus
3R 32079331 3R 7300824..7301176 840..488 1765 100 Minus
3R 32079331 3R 7274045..7274359 1642..1328 1560 99.7 Minus
X 23542271 X 5611489..5611575 1018..1104 225 83.9 Plus
3R 32079331 3R 18013332..18013414 1022..1104 220 84.3 Plus
3L 28110227 3L 3150623..3150714 1019..1110 205 81.5 Plus
3L 28110227 3L 13430362..13430448 1111..1025 195 81.6 Minus
2R 25286936 2R 9458552..9458625 1033..1106 190 83.8 Plus
X 23542271 X 21354327..21354390 1041..1104 185 85.9 Plus
Blast to na_te.dros performed on 2014-11-28 08:31:51 has no hits.

BO05054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:25 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RB 1..823 17..840 99 <- Plus
rn-RB 2037..2841 841..1643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:56 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RB 517..1339 17..840 99 <- Plus
rn-RB 2553..3354 841..1644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:52 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1571 17..840 99 <- Plus
rn-RE 2785..3586 841..1644 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:25 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RB 517..1339 17..840 99 <- Plus
rn-RB 2553..3359 841..1649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:59 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
rn-RE 749..1571 17..840 99 <- Plus
rn-RE 2785..3586 841..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:59 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7274041..7274358 1329..1644 99 <- Minus
3R 7274995..7275477 846..1328 100 <- Minus
3R 7300820..7301176 488..845 99 <- Minus
3R 7307857..7308327 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:52 Download gff for BO05054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3099763..3100080 1329..1644 99 <- Minus
arm_3R 3100717..3101199 846..1328 100 <- Minus
arm_3R 3126542..3126898 488..845 99 <- Minus
arm_3R 3133579..3134049 17..487 100   Minus

BO05054.pep Sequence

Translation from 16 to 1660

> BO05054.pep
MIMHGTWYKGPQLAHHPHSNPHNSSHGHSDYHQFRSYPSFVVTPYHDGHV
QGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTGGQGSPVIVESSFAIAA
AAAAAAAAVAVGGSSATPLLPSPPIKIEQVFGEPSSLGAVVEDYALGLDC
PVEHTFRKPHNNNGYSWSTGNNNEVVSHSSNGHTNNHPTTPPTPPNEASA
TQATSVSAINLNQAQPASQTRSNFGSSIKSPPSEPDAVTAATCKSQENNS
GQNPTPNSLSDHNPAHNLNSNSTAAAAAGGSANPANGPPPPPNPAQHQRN
NLGLPPVSIAPSDNGYWPKVSPDSAAAANAMEVMHQQQQQQQQQQQQQQQ
QQQQQQQQAHHHHPQHGVPPQQHVPPQQQQQQQQQQQHHHPQQQPPPQHS
MEAHYAQPTAPNGSQSNGHGAELQPHHRMPDPVREDIASTPSAVGPYDAA
SITKTTSNSAFTPINSMPPHLNSLSHHPMAQRPYLYDAISFPNKNVNQNN
ANAFPNQLISLHQIRNYAHQPAGLMAGEHLLGVIVGPGKDKGASFLDH

BO05054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
rn-PE 946 CG42277-PE 1..408 1..421 1515 72 Plus
rn-PG 952 CG42277-PG 1..408 1..421 1515 72 Plus
rn-PE 946 CG42277-PE 676..946 272..542 1466 98.9 Plus
rn-PG 952 CG42277-PG 676..946 272..542 1466 98.9 Plus
rn-PC 692 CG42277-PC 422..692 272..542 1466 98.9 Plus
rn-PF 927 CG42277-PF 657..927 272..542 1466 98.9 Plus
rn-PF 927 CG42277-PF 24..389 48..421 659 43.8 Plus
Smr-PF 3601 CG4013-PF 18..304 169..463 248 29 Plus