Clone BO05057 Report

Search the DGRC for BO05057

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripthbn-RA
Protein status:BO05057.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO05057.3prime Sequence

914 bp (817 high quality bases) assembled on 2005-12-02

> BO05057.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGCCCTTGGTGACCACGGAGACGGGTG
TGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGCC
GTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCGC
TGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTCT
CGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGAG
AGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCGC
CGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGGC
CCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGGC
GCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGATT
AAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATCG
AGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGGA
AACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGATT
CATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCACA
CCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCTT
GTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGATG
CAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGCC
TCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAAGACAGCTCG
TCGTCGTTATCCACGTCCAGGCCCGCGTCCGTATTCGTTGGGGAGTCCTC
TCGTTTGGCCTGAA

BO05057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 332..1227 914..19 4405 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 654..1549 914..19 4435 99.7 Minus
repo-RA 2996 CG31240-RA 1286..1387 718..617 225 82.5 Minus
CG34340-RF 2989 CG34340-RF 807..915 725..617 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20954917..20955463 19..565 2735 100 Plus
2R 25286936 2R 20958258..20958391 650..783 670 100 Plus
2R 25286936 2R 20958539..20958671 782..914 620 97.7 Plus
2R 25286936 2R 20955686..20955780 562..656 475 100 Plus
3R 32079331 3R 18237892..18237993 718..617 225 81.4 Minus
Blast to na_te.dros performed on 2015-02-12 01:15:23 has no hits.

BO05057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:19 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 334..1230 16..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:30 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 334..1230 16..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:05 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 654..1561 9..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:08 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 654..1561 9..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:08 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20958260..20958389 652..781 100 <- Plus
2R 20958539..20958671 782..914 97   Plus
2R 20955688..20955775 564..651 100 <- Plus
2R 20954905..20955461 9..563 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:05 Download gff for BO05057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842410..16842966 9..563 99 <- Plus
arm_2R 16843193..16843280 564..651 100 <- Plus
arm_2R 16845765..16845894 652..781 100 <- Plus
arm_2R 16846044..16846176 782..914 97   Plus

BO05057.5prime Sequence

901 bp (805 high quality bases) assembled on 2005-12-02

> BO05057.5prime
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
C

BO05057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 323..1207 17..901 4425 100 Plus
repo-RA 2996 CG31240-RA 1286..1387 544..645 225 82.5 Plus
CG34340-RF 2989 CG34340-RF 807..915 537..645 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20958539..20958846 480..173 1540 100 Minus
2R 25286936 2R 20955259..20955463 901..697 1025 100 Minus
2R 25286936 2R 20960431..20960587 173..17 785 100 Minus
2R 25286936 2R 20958258..20958391 612..479 670 100 Minus
2R 25286936 2R 20955686..20955780 700..606 475 100 Minus
3R 32079331 3R 18237892..18237993 544..645 225 81.4 Plus
Blast to na_te.dros performed on 2015-02-13 15:28:13 has no hits.

BO05057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:20 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:31 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:32 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1207 11..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:43 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1207 11..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:43 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20960431..20960595 11..173 98   Minus
2R 20955259..20955461 699..901 100 <- Minus
2R 20955688..20955775 611..698 100 <- Minus
2R 20958260..20958389 481..610 100 <- Minus
2R 20958539..20958845 174..480 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:32 Download gff for BO05057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842764..16842966 699..901 100 <- Minus
arm_2R 16843193..16843280 611..698 100 <- Minus
arm_2R 16845765..16845894 481..610 100 <- Minus
arm_2R 16846044..16846350 174..480 100 <- Minus
arm_2R 16847936..16848100 11..173 98   Minus

BO05057.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629961

> BO05057.complete
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
CCAGTACATGGGCCTGAGCAATCTGAATGGGATCTTTGGCGCGGGAGCAG
CTGCAGCAGCGGCGGCAGCATCGGCCGGCTATCCGCAGAATCTATCGCTG
CACGCAGGACTCTCTGCGATGAGCCAAGTTAGCCCGCCGTGCAGCAACAG
CAGTCCGCGCGAGAGTCCCAAGCTAGTGCCTCATCCCACACCGCCGCATG
CCACGCCCCCAGCGGGCGGCAACGGAGGCGGCGGACTGCTAACGGGCGGA
CTGATCTCGACGGCCGCCCAATCGCCGAACAGCGCGGCAGGTGCCAGCAG
CAACGCCTCCACACCCGTCTCCGTGGTCACCAAGGGCGAGGACGCAAGCT
TTCTAGACCAT

BO05057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1230 CG33152-PA 1..1227 17..1243 6135 100 Plus
repo-RA 1839 CG31240-PA 981..1082 544..645 225 81.4 Plus
CG34340-RF 1764 CG34340-PF 218..326 537..645 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 323..1549 17..1243 6135 100 Plus
repo-RA 2996 CG31240-RA 1286..1387 544..645 225 81.4 Plus
CG34340-RF 2989 CG34340-RF 807..915 537..645 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20954917..20955463 1243..697 2735 100 Minus
2R 25286936 2R 20958539..20958846 480..173 1540 100 Minus
2R 25286936 2R 20960431..20960587 173..17 785 100 Minus
2R 25286936 2R 20958258..20958391 612..479 670 100 Minus
2R 25286936 2R 20955686..20955780 700..606 475 100 Minus
3R 32079331 3R 18237892..18237993 544..645 225 81.4 Plus
Blast to na_te.dros performed on 2014-11-27 15:05:40 has no hits.

BO05057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:01 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 1..1230 17..1246 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:31 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1561 11..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:15 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 323..1549 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:02 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1561 11..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:51 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 323..1549 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:51 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20954914..20955461 699..1245 99 <- Minus
2R 20955688..20955775 611..698 100 <- Minus
2R 20958260..20958389 481..610 100 <- Minus
2R 20958539..20958845 174..480 100 <- Minus
2R 20960431..20960587 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:15 Download gff for BO05057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842419..16842966 699..1245 99 <- Minus
arm_2R 16843193..16843280 611..698 100 <- Minus
arm_2R 16845765..16845894 481..610 100 <- Minus
arm_2R 16846044..16846350 174..480 100 <- Minus
arm_2R 16847936..16848092 17..173 100   Minus

BO05057.pep Sequence

Translation from 16 to 1261

> BO05057.pep
MMTTTTSQHHQHHPIMPPAMRPAPVQESPVSRPRAVYSIDQILGNQHQIK
RSDTPSEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHS
QQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMERP
RKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVW
FQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSM
QSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGL
SNLNGIFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRES
PKLVPHPTPPHATPPAGGNGGGGLLTGGLISTAAQSPNSAAGASSNASTP
VSVVTKGEDASFLDH

BO05057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-PA 409 CG33152-PA 1..409 1..409 2193 100 Plus
Rx-PB 904 CG10052-PB 460..736 87..365 332 34.7 Plus
al-PA 408 CG3935-PA 71..306 139..364 312 35.6 Plus
otp-PE 409 CG10036-PE 74..323 117..361 273 32.4 Plus
otp-PK 416 CG10036-PK 74..330 117..361 272 32.1 Plus