Clone Sequence Records
BO05057.3prime Sequence
914 bp (817 high quality bases) assembled on 2005-12-02
> BO05057.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGCCCTTGGTGACCACGGAGACGGGTG
TGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGCC
GTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCGC
TGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTCT
CGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGAG
AGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCGC
CGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGGC
CCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGGC
GCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGATT
AAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATCG
AGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGGA
AACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGATT
CATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCACA
CCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCTT
GTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGATG
CAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGCC
TCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAAGACAGCTCG
TCGTCGTTATCCACGTCCAGGCCCGCGTCCGTATTCGTTGGGGAGTCCTC
TCGTTTGGCCTGAA
BO05057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 332..1227 | 914..19 | 4405 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 654..1549 | 914..19 | 4435 | 99.7 | Minus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 718..617 | 225 | 82.5 | Minus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 725..617 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20954917..20955463 | 19..565 | 2735 | 100 | Plus |
2R | 25286936 | 2R | 20958258..20958391 | 650..783 | 670 | 100 | Plus |
2R | 25286936 | 2R | 20958539..20958671 | 782..914 | 620 | 97.7 | Plus |
2R | 25286936 | 2R | 20955686..20955780 | 562..656 | 475 | 100 | Plus |
3R | 32079331 | 3R | 18237892..18237993 | 718..617 | 225 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:15:23 has no hits.
BO05057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:19 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 334..1230 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:30 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 334..1230 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:05 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 654..1561 | 9..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:08 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 654..1561 | 9..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:08 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20958260..20958389 | 652..781 | 100 | <- | Plus |
2R | 20958539..20958671 | 782..914 | 97 | | Plus |
2R | 20955688..20955775 | 564..651 | 100 | <- | Plus |
2R | 20954905..20955461 | 9..563 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:05 Download gff for
BO05057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842410..16842966 | 9..563 | 99 | <- | Plus |
arm_2R | 16843193..16843280 | 564..651 | 100 | <- | Plus |
arm_2R | 16845765..16845894 | 652..781 | 100 | <- | Plus |
arm_2R | 16846044..16846176 | 782..914 | 97 | | Plus |
BO05057.5prime Sequence
901 bp (805 high quality bases) assembled on 2005-12-02
> BO05057.5prime
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
C
BO05057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 323..1207 | 17..901 | 4425 | 100 | Plus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 544..645 | 225 | 82.5 | Plus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 537..645 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20958539..20958846 | 480..173 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 20955259..20955463 | 901..697 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 20960431..20960587 | 173..17 | 785 | 100 | Minus |
2R | 25286936 | 2R | 20958258..20958391 | 612..479 | 670 | 100 | Minus |
2R | 25286936 | 2R | 20955686..20955780 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 18237892..18237993 | 544..645 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:28:13 has no hits.
BO05057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:20 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:31 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:32 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1207 | 11..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:43 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1207 | 11..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:43 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20960431..20960595 | 11..173 | 98 | | Minus |
2R | 20955259..20955461 | 699..901 | 100 | <- | Minus |
2R | 20955688..20955775 | 611..698 | 100 | <- | Minus |
2R | 20958260..20958389 | 481..610 | 100 | <- | Minus |
2R | 20958539..20958845 | 174..480 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:32 Download gff for
BO05057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842764..16842966 | 699..901 | 100 | <- | Minus |
arm_2R | 16843193..16843280 | 611..698 | 100 | <- | Minus |
arm_2R | 16845765..16845894 | 481..610 | 100 | <- | Minus |
arm_2R | 16846044..16846350 | 174..480 | 100 | <- | Minus |
arm_2R | 16847936..16848100 | 11..173 | 98 | | Minus |
BO05057.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629961
> BO05057.complete
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
CCAGTACATGGGCCTGAGCAATCTGAATGGGATCTTTGGCGCGGGAGCAG
CTGCAGCAGCGGCGGCAGCATCGGCCGGCTATCCGCAGAATCTATCGCTG
CACGCAGGACTCTCTGCGATGAGCCAAGTTAGCCCGCCGTGCAGCAACAG
CAGTCCGCGCGAGAGTCCCAAGCTAGTGCCTCATCCCACACCGCCGCATG
CCACGCCCCCAGCGGGCGGCAACGGAGGCGGCGGACTGCTAACGGGCGGA
CTGATCTCGACGGCCGCCCAATCGCCGAACAGCGCGGCAGGTGCCAGCAG
CAACGCCTCCACACCCGTCTCCGTGGTCACCAAGGGCGAGGACGCAAGCT
TTCTAGACCAT
BO05057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1230 | CG33152-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
repo-RA | 1839 | CG31240-PA | 981..1082 | 544..645 | 225 | 81.4 | Plus |
CG34340-RF | 1764 | CG34340-PF | 218..326 | 537..645 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 323..1549 | 17..1243 | 6135 | 100 | Plus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 544..645 | 225 | 81.4 | Plus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 537..645 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20954917..20955463 | 1243..697 | 2735 | 100 | Minus |
2R | 25286936 | 2R | 20958539..20958846 | 480..173 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 20960431..20960587 | 173..17 | 785 | 100 | Minus |
2R | 25286936 | 2R | 20958258..20958391 | 612..479 | 670 | 100 | Minus |
2R | 25286936 | 2R | 20955686..20955780 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 18237892..18237993 | 544..645 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:05:40 has no hits.
BO05057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:01 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 1..1230 | 17..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:31 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1561 | 11..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:15 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 323..1549 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:02 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1561 | 11..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:51 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 323..1549 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:51 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20954914..20955461 | 699..1245 | 99 | <- | Minus |
2R | 20955688..20955775 | 611..698 | 100 | <- | Minus |
2R | 20958260..20958389 | 481..610 | 100 | <- | Minus |
2R | 20958539..20958845 | 174..480 | 100 | <- | Minus |
2R | 20960431..20960587 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:15 Download gff for
BO05057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842419..16842966 | 699..1245 | 99 | <- | Minus |
arm_2R | 16843193..16843280 | 611..698 | 100 | <- | Minus |
arm_2R | 16845765..16845894 | 481..610 | 100 | <- | Minus |
arm_2R | 16846044..16846350 | 174..480 | 100 | <- | Minus |
arm_2R | 16847936..16848092 | 17..173 | 100 | | Minus |
BO05057.pep Sequence
Translation from 16 to 1261
> BO05057.pep
MMTTTTSQHHQHHPIMPPAMRPAPVQESPVSRPRAVYSIDQILGNQHQIK
RSDTPSEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHS
QQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMERP
RKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVW
FQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSM
QSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGL
SNLNGIFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRES
PKLVPHPTPPHATPPAGGNGGGGLLTGGLISTAAQSPNSAAGASSNASTP
VSVVTKGEDASFLDH
BO05057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-PA | 409 | CG33152-PA | 1..409 | 1..409 | 2193 | 100 | Plus |
Rx-PB | 904 | CG10052-PB | 460..736 | 87..365 | 332 | 34.7 | Plus |
al-PA | 408 | CG3935-PA | 71..306 | 139..364 | 312 | 35.6 | Plus |
otp-PE | 409 | CG10036-PE | 74..323 | 117..361 | 273 | 32.4 | Plus |
otp-PK | 416 | CG10036-PK | 74..330 | 117..361 | 272 | 32.1 | Plus |