Clone Sequence Records
BO05058.3prime Sequence
910 bp (834 high quality bases) assembled on 2005-12-02
> BO05058.3prime
ATGGTCTAGAAAGCTTGCGAACTGCAGCCGCTTCTTCTGGGCCAATCCAT
TGCCCCTCACCGTAGTCTCGACCAGCTTGCGCTTGAGCGCAGGCTTCGTG
TCGCCGGTCTGCGGATTGGCACCCTCCTTGGCGGCCAGAATGGCCGACGG
CATTGGCAACTTGGGACCCACTGTGGGCGCCGGTTTGTTAGCGAAATACG
GCATGCTCAGTGCCTCGCGGCAGGACACACGCCGCAGCGGATTCATGGCA
AACAGGCGTTGCATCAGATGGATCAAGTCATTGCCCGCGGCGGTGAATAT
ATTGTCCAATGGTGTGCCCGGAAAGTTGCGAAACTGCAGATAGTCGTGCA
GTTTGCTCAAATGCGGCCATTCAGCTTCCGTGGGTGTTCCCAGTGTGGAA
AAGATCCGTGTCAGCTGATCCAGATCCGAATCGCCCGGCATGAACGGCAC
TCGCAGCATAAGTTCAGCCAAAATGCAGCCAACTGCCCACATATCCACAC
CGGTGCCATATTGTCGGGCGCCAAAGAGCAATTCGGGCGAACGATACCAG
CGTGTGACCACGTGGTGCGTGTAAATGCGATTGGGCGAACCGAAGGACTT
GGCCAAACCGAAATCGCCAATCTTTAGGATGCCATCGCTGTTGACCAGCA
AATTGTTGGGCTTCAAATCGCGGTGCAGTATCCAATTGAGATGCAAATAC
TCCAGACCCTTTAGCGTCATGATGGCATAGGCCTTGATGTTCGCCTGCGT
TAATATAATCTTGTTATCCTTGATGATCACCTCCAGATCCGTGTCCATGA
AGTCGAAAACCAGCGAGACATTCGAAAGTTGACCGAAAACGTCCACCAAG
CCAATGATATTCTCGTGCTGCAGCTCCTGCAATATCTTGATCTCACGCAG
CGCTGGTCTG
BO05058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3319-PA | 1062 | Cdk7-RA | 173..1059 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1448 | CG3319-RA | 262..1148 | 905..19 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5307765..5308651 | 19..905 | 4420 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:15:30 has no hits.
BO05058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:21 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-PA | 168..1062 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:32 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3319-PA | 168..1062 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:06 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 257..1152 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:43 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 257..1152 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:43 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5307761..5308656 | 13..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:06 Download gff for
BO05058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5201794..5202689 | 13..910 | 99 | | Plus |
BO05058.5prime Sequence
862 bp (792 high quality bases) assembled on 2005-12-02
> BO05058.5prime
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCCGCCGCGGGCAATGACTTGATCCATCTGATGCACCGCCTGTTTGCCAT
GAATCCCGCTGC
BO05058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3319-PA | 1062 | Cdk7-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
| CG3319-PA | 1062 | Cdk7-RA | 785..839 | 802..856 | 250 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1448 | CG3319-RA | 90..933 | 17..862 | 4165 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5307985..5308760 | 856..80 | 3820 | 99.7 | Minus |
| X | 23542271 | X | 5308829..5308894 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:33:38 has no hits.
BO05058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:22 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-PA | 1..844 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:34 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3319-PA | 1..844 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:01 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..933 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:38 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..933 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:38 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5307980..5308757 | 83..862 | 99 | <- | Minus |
| X | 5308829..5308894 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:01 Download gff for
BO05058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5202013..5202790 | 83..862 | 99 | <- | Minus |
| arm_X | 5202862..5202927 | 17..82 | 100 | | Minus |
BO05058.complete Sequence
1093 bp (1093 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629962
> BO05058.complete
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCGCCGCGGGCAATGACTTGATCCATCTGATGCAACGCCTGTTTGCCATG
AATCCGCTGCGGCGTGTGTCCTGCCGCGAGGCACTGAGCATGCCGTATTT
CGCTAACAAACCGGCGCCCACAGTGGGTCCCAAGTTGCCAATGCCGTCGG
CCATTCTGGCCGCCAAGGAGGGTGCCAATCCGCAGACCGGCGACACGAAG
CCTGCGCTCAAGCGCAAGCTGGTCGAGACTACGGTGAGGGGCAATGGATT
GGCCCAGAAGAAGCGGCTGCAGTTCGCAAGCTTTCTAGACCAT
BO05058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1062 | CG3319-PA | 1..1059 | 17..1075 | 5280 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1448 | CG3319-RA | 90..1148 | 17..1075 | 5280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5307765..5308760 | 1075..80 | 4965 | 99.9 | Minus |
| X | 23542271 | X | 5308829..5308894 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:52:47 has no hits.
BO05058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:31 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 1..1062 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:31 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 35..1097 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:58 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1148 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:32 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 35..1097 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:59 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1148 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:59 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5307761..5308757 | 83..1077 | 99 | <- | Minus |
| X | 5308829..5308894 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:58 Download gff for
BO05058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5201794..5202790 | 83..1077 | 99 | <- | Minus |
| arm_X | 5202862..5202927 | 17..82 | 100 | | Minus |
BO05058.pep Sequence
Translation from 16 to 1093
> BO05058.pep
MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIKKGSRED
ARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEV
IIKDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGI
LKIGDFGLAKSFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVG
CILAELMLRVPFMPGDSDLDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFR
NFPGTPLDNIFTAAGNDLIHLMQRLFAMNPLRRVSCREALSMPYFANKPA
PTVGPKLPMPSAILAAKEGANPQTGDTKPALKRKLVETTVRGNGLAQKKR
LQFASFLDH
BO05058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-PA | 353 | CG3319-PA | 1..353 | 1..353 | 1831 | 100 | Plus |
| Cdk2-PC | 314 | CG10498-PC | 6..289 | 10..297 | 605 | 41.2 | Plus |
| Cdk2-PB | 314 | CG10498-PB | 6..289 | 10..297 | 605 | 41.2 | Plus |
| Cdk2-PA | 314 | CG10498-PA | 6..289 | 10..297 | 605 | 41.2 | Plus |
| Cdk1-PA | 297 | CG5363-PA | 2..287 | 10..295 | 592 | 40.5 | Plus |
