Clone Sequence Records
BO05060.3prime Sequence
627 bp (626 high quality bases) assembled on 2005-09-08
> BO05060.3prime
ATGGTCTAGAAAGCTTGCCAGGTCGTCCTGCCCCAGTGATATATAGTCGA
GGATGTCCTCATCTTCAGTACCAGAACTGCAGGAATTGTTACGGTAGTCT
TCAAAACTGGCTTCCAACTTGGTATGAAAATTGTTAGGAGGTGTTGCTCC
CGGAATCGTCGATGTTGCTGGCTTGCAATAAGAGCTAATGCTGTTGCAGG
AACTTGTGCTGCCAGTTGGAGATTGCAACTGCAACTCTTGGTGCCAGGCG
TATAAGTGTTGATGCTGTTGCTGCTGCTGAAAGTGCAAATGTTGCTGCTG
CAAATGCAACTGTTTCTGTTTCTGCTGGTCGTTTTCATGAAGAACTTTCT
GCAAGCGCCGTATGTACTCTACTGCCATTTTCAGTGTGCTAACTTTGCTC
AGTTTTTTATTGGCGCCGGGACCAATTCCCCGGCGACCATTGCTTAAATC
GGCTATTACGGCCGCAGGGATATGTTGTCGTAGTTGGCTGAAGCCATTGT
TGACCTGCTTTACGCGGTTGCGTTCCCGGGCATTTCTCCGGATAACAGAG
GGTCCATTAAAGGCCGAAGATGACTCCTCGTCGTCGTTGAAAACAGAGTG
ATTTTCGCTGCCCAAAGCCATGTCGAC
BO05060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3796-PA | 606 | ac-RA | 1..603 | 621..19 | 2965 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ac-RA | 917 | CG3796-RA | 64..666 | 621..19 | 2985 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 370094..370696 | 621..19 | 2985 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 14:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 9927..10002 | 285..210 | 110 | 60.5 | Minus |
BO05060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:16:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:38 Download gff for
BO05060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3796-PA | 1..606 | 15..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:18 Download gff for
BO05060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 58..669 | 15..627 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:10 Download gff for
BO05060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 58..669 | 15..627 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:10 Download gff for
BO05060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 370088..370699 | 15..627 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:18 Download gff for
BO05060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 264121..264732 | 15..627 | 98 | | Minus |
BO05060.5prime Sequence
627 bp (626 high quality bases) assembled on 2005-09-08
> BO05060.5prime
CAGTCGACATGGCTTCGGGCAGCGAAAATCACTCTGTTTTCAACGACGAC
GAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGGAGAAATGC
CCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAGCCAACTAC
GACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATGGTCGCCGG
GGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGCACACTGAA
AATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCATGAAAACG
ACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATTTGCACTTT
CAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAAGAGTTGCA
GTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCATTAGCTCTT
ATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTCCTAACAAT
TTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAACAATTCCTG
CAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATCACTCTGGC
AGGACGACCTGGCAAGCTTTCTAGACC
BO05060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3796-PA | 606 | ac-RA | 1..603 | 9..611 | 2990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ac-RA | 917 | CG3796-RA | 64..666 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 370094..370696 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 10:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 9927..10002 | 345..420 | 110 | 60.5 | Plus |
BO05060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:16:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:39 Download gff for
BO05060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3796-PA | 1..606 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:39 Download gff for
BO05060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..669 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:51 Download gff for
BO05060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..669 | 9..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:51 Download gff for
BO05060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 370094..370699 | 9..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:39 Download gff for
BO05060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 264127..264732 | 9..615 | 99 | | Plus |
BO05060.complete Sequence
637 bp (637 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629964
> BO05060.complete
GAAGTTATCAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCA
ACGACGACGAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGG
AGAAATGCCCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAG
CCAACTACGACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATG
GTCGCCGGGGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGC
ACACTGAAAATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCA
TGAAAACGACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATT
TGCACTTTCAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAA
GAGTTGCAGTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCAT
TAGCTCTTATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTC
CTAACAATTTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAAC
AATTCCTGCAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATC
ACTCTGGCAGGACGACCTGGCAAGCTTTCTAGACCAT
BO05060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ac-RA | 606 | CG3796-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ac-RA | 917 | CG3796-RA | 64..666 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 370094..370696 | 17..619 | 3015 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 17:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 9927..10002 | 353..428 | 110 | 60.5 | Plus |
BO05060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:36 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 1..606 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:40 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..669 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:54 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..666 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:36 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..669 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:11 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ac-RA | 64..666 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:11 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 370094..370696 | 17..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:54 Download gff for
BO05060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 264127..264729 | 17..621 | 99 | | Plus |
BO05060.pep Sequence
Translation from 16 to 637
> BO05060.pep
MALGSENHSVFNDDEESSSAFNGPSVIRRNARERNRVKQVNNGFSQLRQH
IPAAVIADLSNGRRGIGPGANKKLSKVSTLKMAVEYIRRLQKVLHENDQQ
KQKQLHLQQQHLHFQQQQQHQHLYAWHQELQLQSPTGSTSSCNSISSYCK
PATSTIPGATPPNNFHTKLEASFEDYRNNSCSSGTEDEDILDYISLWQDD
LASFLDH
BO05060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ac-PA | 201 | CG3796-PA | 1..201 | 1..201 | 1057 | 100 | Plus |
| l(1)sc-PA | 257 | CG3839-PA | 83..256 | 24..199 | 291 | 41.7 | Plus |
| sc-PA | 345 | CG3827-PA | 100..344 | 25..199 | 264 | 35.2 | Plus |
| ase-PA | 486 | CG3258-PA | 160..227 | 25..94 | 203 | 64.3 | Plus |
