Clone Sequence Records
BO05063.3prime Sequence
740 bp (739 high quality bases) assembled on 2005-12-02
> BO05063.3prime
ATGGTCTAGAAAGCTTGCATTATGGTGCATGGTCTCGTGGTTCTTAAGGG
CAGAGTTTCTGTTGAAGATCTTGGGGCATCGGGAACACTTGTAGGATCGT
AATTCAGGTCTCGAACTATGTACGCGCTCATGGCGCCTAAGACCGCGGAT
TTGTGCGTAGGACTGGGAGCATTGTAAGCATTTGTAAGGTTTTTCACGCG
CATGGACCCACATGTGACACTTAAGGTGCGCAGGTAACATGAAATACTTC
CCGCAAATGTTACATTTATGTGTCTTCTTCAGCATTTTCTTCTTGGTATC
CTTCTGGGCGCTGCTCTGGCTCACATTGCCATTCCCGTTGGAGTTTGAGT
TGGGGCACATATTCTCCACGTTGTCCCCCGGTGAATCGATTGTCAAGTCA
ATTGTCTCCATCTCCTGGCTGCCATCGACTGGCTCAATCAGTTCAACATC
GGAGTCATTCGATCCTTCTTCCTCATAATTCATCTCACTGACCACCATCT
CATCCTGCTCAATCACCTGCACGCTGTCCATCCCGTAAGCAGTCTGCGCA
TCCAGCGCACAAGACTGGCAAATGGTCTTGGGAAAAGGATCCTTCGGTAG
AACCGGGAAGCCGCACCAATCGGAAATCATGGTCGCTAGGGAAACGCCGG
GTAGCGGCATCGTTTCGAAGATGCATAGCATGTTCTCCATCTCCCTCAAA
CAGACACGGCACATCCTGGAATCCATGTCGACTGATAACT
BO05063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PA | 699 | CG4318-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..772 | 726..19 | 3540 | 100 | Minus |
CG4318-RB | 1464 | CG4318-RB | 950..1030 | 99..19 | 375 | 97.5 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 99..19 | 375 | 97.5 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 99..19 | 375 | 97.5 | Minus |
CG4318-RB | 1464 | CG4318-RB | 778..858 | 99..19 | 375 | 97.5 | Minus |
CG4318-RB | 1464 | CG4318-RB | 864..944 | 99..19 | 375 | 97.5 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 99..25 | 345 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154153..13154860 | 19..726 | 3540 | 100 | Plus |
X | 23542271 | X | 13153723..13153803 | 19..99 | 375 | 97.5 | Plus |
X | 23542271 | X | 13153809..13153889 | 19..99 | 375 | 97.5 | Plus |
X | 23542271 | X | 13153895..13153975 | 19..99 | 375 | 97.5 | Plus |
X | 23542271 | X | 13153981..13154061 | 19..99 | 375 | 97.5 | Plus |
X | 23542271 | X | 13154067..13154147 | 19..99 | 375 | 97.5 | Plus |
X | 23542271 | X | 13153643..13153717 | 25..99 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:35:59 has no hits.
BO05063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:29 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:45 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:10 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..775 | 15..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:40 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..775 | 15..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:40 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154150..13154868 | 15..737 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:10 Download gff for
BO05063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048183..13048901 | 15..737 | 99 | | Plus |
BO05063.5prime Sequence
740 bp (739 high quality bases) assembled on 2005-12-02
> BO05063.5prime
GAAGTTATCAGTCGACATGGATTCCAGGATGTGCCGTGTCTGTTTGAGGG
AGATGGAGAACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTT
TCCCTAGCGACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAA
GGATCCTTTTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCGCAGA
CTGCTTACGGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTG
GTCAGTGAGATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGA
ACTGATTGAGCCAGTCGATGGCAGCCAGGAGATGGAGACAATTGACTTGA
CAATCGATTCACCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAAC
TCCAACGGGAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAA
GAAGAAAATGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATT
TCATGTTACCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAA
AAACCTTACAAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGG
TCTTAGGCGCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCT
ACAAGTGTTCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAG
AACCACGAGACCATGCACCATAATGCAAGCTTTCTAGACC
BO05063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PA | 699 | CG4318-RA | 1..696 | 29..724 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..772 | 17..724 | 3540 | 100 | Plus |
CG4318-RB | 1464 | CG4318-RB | 778..858 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 864..944 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 950..1030 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 644..718 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154153..13154860 | 724..17 | 3540 | 100 | Minus |
X | 23542271 | X | 13153723..13153803 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153809..13153889 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153895..13153975 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153981..13154061 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13154067..13154147 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153643..13153717 | 718..644 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:44:11 has no hits.
BO05063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:30 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 29..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:46 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 29..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:36 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..775 | 6..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:14 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..775 | 6..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:14 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154150..13154868 | 6..728 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:36 Download gff for
BO05063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048183..13048901 | 6..728 | 99 | | Minus |
BO05063.complete Sequence
742 bp (742 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629965
> BO05063.complete
GAAGTTATCAGTCGACATGGATTCCAGGATGTGCCGTGTCTGTTTGAGGG
AGATGGAGAACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTT
TCCCTAGCGACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAA
GGATCCTTTTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCGCAGA
CTGCTTACGGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTG
GTCAGTGAGATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGA
ACTGATTGAGCCAGTCGATGGCAGCCAGGAGATGGAGACAATTGACTTGA
CAATCGATTCACCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAAC
TCCAACGGGAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAA
GAAGAAAATGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATT
TCATGTTACCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAA
AAACCTTACAAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGG
TCTTAGGCGCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCT
ACAAGTGTTCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAG
AACCACGAGACCATGCACCATAATGCAAGCTTTCTAGACCAT
BO05063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 711 | CG4318-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..772 | 17..724 | 3540 | 100 | Plus |
CG4318-RB | 1464 | CG4318-RB | 778..858 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 864..944 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 950..1030 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 644..724 | 375 | 97.5 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 644..718 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154153..13154860 | 724..17 | 3540 | 100 | Minus |
X | 23542271 | X | 13154067..13154147 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153723..13153803 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153809..13153889 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153895..13153975 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153981..13154061 | 724..644 | 375 | 97.5 | Minus |
X | 23542271 | X | 13153643..13153717 | 718..644 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:40 has no hits.
BO05063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:37 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 1..699 | 29..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:42 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 57..775 | 6..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:17 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 65..772 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:37 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 1..699 | 29..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:42 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 65..772 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:42 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154151..13154860 | 17..726 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:17 Download gff for
BO05063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048184..13048893 | 17..726 | 99 | | Minus |
BO05063.pep Sequence
Translation from 16 to 742
> BO05063.pep
MDSRMCRVCLREMENMLCIFETMPLPGVSLATMISDWCGFPVLPKDPFPK
TICQSCALDAQTAYGMDSVQVIEQDEMVVSEMNYEEEGSNDSDVELIEPV
DGSQEMETIDLTIDSPGDNVENMCPNSNSNGNGNVSQSSAQKDTKKKMLK
KTHKCNICGKYFMLPAHLKCHMWVHAREKPYKCLQCSQSYAQIRGLRRHE
RVHSSRPELRSYKCSRCPKIFNRNSALKNHETMHHNASFLDH
BO05063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PB | 236 | CG4318-PB | 1..236 | 1..236 | 1287 | 100 | Plus |
CG15436-PA | 346 | CG15436-PA | 2..232 | 3..234 | 248 | 30 | Plus |
Neu2-PB | 308 | CG7204-PB | 1..203 | 16..240 | 247 | 30.4 | Plus |
Neu2-PA | 382 | CG7204-PA | 1..203 | 16..240 | 247 | 30.4 | Plus |
CG6808-PB | 375 | CG6808-PB | 162..333 | 72..234 | 199 | 28.6 | Plus |
CG15436-PA | 346 | CG15436-PA | 220..317 | 135..235 | 173 | 32.7 | Plus |