Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
BO05064.3prime Sequence
839 bp (838 high quality bases) assembled on 2005-12-02
> BO05064.3prime
ATGGTCTAGAAAGCTTGCTTCTTCTATTTCAGTATTTGGCATGAAACCCG
TGCATTTTGAAGCACCACAGAGGCAAGTCTTTCCACCTGTCATCTTTTTA
TACTGCCCTTCTCCGCCATAATGAAAGCATAACTCCTCCTTGGCCGCAAT
ATCCCTTGCTGCGAAAATACCTATTTTTGGTATGGGACAGTCTATTCGTA
CAGCTGCTATATGACAGTTCGGTTCGCAGCTGTGGTTCAGGTAGCGTCCG
ATGTTTCCACGTCTTGATGGATCAACGATGGTCACCTGTTGCTTCTTGTC
GCTAGTGTATTCATTAAGCACCAGGATATAGTTCATCAGGCCTAGTTTTT
CATTATCATGCAAGCGGCTTCTTGCCTCGGGAACCGTTAAAAGTTCTCCG
GCATATTCGCAAATGTATCCTCCTTTTGTAATTTTCGCTGTAGTCCGTAG
TCCTTTGGATCCGTACACGGGCGAATCGAATATTTCCAAATGTTTCCTCG
GGCCTGAGTACACAAGCCGATTGGAGCACGTGTTTCTACAGCATTTGCAC
ATGTCATTGCACTCAATGACAGGATTTGCGGAATTCCGAAGAATTAATTC
GCTGCCATCTTCTGTGAACTCATATTGGCCTCCATGTGCACAGACTTCGC
TGTTTTCGCAGGCTCCTTTGCAGTGACAGGGGTTCAAAAGAACAGAATTG
TACTCGTCCGCCAAGAATTTGAATTCTTTACTTCCATCGCTGGGCATCAA
CACAGATTCCAATATGTAATCGAGTCCATCTGGGTGCTCATAGTCGTCAT
TCGGAGCTGTTTCAGATTCGTCCATGTCGACTGATAACT
BO05064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PA | 672 | CG4565-RA | 1..656 | 825..170 | 3280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..825 | 825..19 | 4035 | 100 | Minus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 32..173 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 825..170 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 10853449..10853603 | 173..19 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:44:19 has no hits.
BO05064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:31 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 164..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:48 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 164..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:38 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:16 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 15..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:16 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 171..825 | 100 | -> | Minus |
3R | 10853452..10853606 | 15..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:38 Download gff for
BO05064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 171..825 | 100 | -> | Minus |
arm_3R | 6679174..6679328 | 15..170 | 98 | | Minus |
BO05064.5prime Sequence
839 bp (802 high quality bases) assembled on 2005-12-02
> BO05064.5prime
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAAGCAAGCTTTCTAGACC
BO05064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PA | 672 | CG4565-RA | 1..656 | 17..672 | 3280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..825 | 17..823 | 4035 | 100 | Plus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 810..669 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 17..672 | 3280 | 100 | Plus |
3R | 32079331 | 3R | 10853449..10853603 | 669..823 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:14:05 has no hits.
BO05064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:31 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:49 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:41 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:02 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 17..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:02 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 17..671 | 100 | -> | Plus |
3R | 10853452..10853606 | 672..827 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:41 Download gff for
BO05064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 17..671 | 100 | -> | Plus |
arm_3R | 6679174..6679328 | 672..827 | 98 | | Plus |
BO05064.complete Sequence
841 bp (841 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629966
> BO05064.complete
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAAGCAAGCTTTCTAGACCAT
BO05064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 810 | CG4565-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..825 | 17..823 | 4035 | 100 | Plus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 810..669 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 17..672 | 3280 | 100 | Plus |
3R | 32079331 | 3R | 10853449..10853603 | 669..823 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:37:01 has no hits.
BO05064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:38 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 1..810 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:44 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:43 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..825 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:38 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..828 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:12 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..825 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:12 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 17..671 | 100 | -> | Plus |
3R | 10853452..10853603 | 672..825 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:43 Download gff for
BO05064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 17..671 | 100 | -> | Plus |
arm_3R | 6679174..6679325 | 672..825 | 98 | | Plus |
BO05064.pep Sequence
Translation from 16 to 841
> BO05064.pep
MDESETAPNDDYEHPDGLDYILESVLMPSDGSKEFKFLADEYNSVLLNPC
HCKGACENSEVCAHGGQYEFTEDGSELILRNSANPVIECNDMCKCCRNTC
SNRLVYSGPRKHLEIFDSPVYGSKGLRTTAKITKGGYICEYAGELLTVPE
ARSRLHDNEKLGLMNYILVLNEYTSDKKQQVTIVDPSRRGNIGRYLNHSC
EPNCHIAAVRIDCPIPKIGIFAARDIAAKEELCFHYGGEGQYKKMTGGKT
CLCGASKCTGFMPNTEIEEASFLDH
BO05064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PB | 269 | CG4565-PB | 1..269 | 1..269 | 1470 | 100 | Plus |
G9a-PA | 1637 | CG2995-PA | 1398..1599 | 50..258 | 250 | 31.1 | Plus |
G9a-PB | 1657 | CG2995-PB | 1418..1619 | 50..258 | 250 | 31.1 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 412..630 | 50..258 | 231 | 30.1 | Plus |
Mes-4-PB | 1423 | CG4976-PB | 1207..1368 | 88..260 | 216 | 32.2 | Plus |