Clone BO05065 Report

Search the DGRC for BO05065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG4956-RA
Protein status:BO05065.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO05065.3prime Sequence

873 bp (749 high quality bases) assembled on 2005-12-02

> BO05065.3prime
ATGGTCTAGAAAGCTTGCCACTGTCTGCTTCTGGAACCACTGAGTGCCAT
CGGTAGGAAGAGGACTTGAGATCGTTGGAGAGAAAAAAATCCAGAAGCGC
CGTTTTCCCAAGACCATATCAAAATTTCTTCTCCAACCAACATCATAGCT
GCGATCGAGCATCTTATAGCATGTACTATTCCGATATACCATTATCATTT
GAAAGACGAACATGAAGAGGGGGACGCCAAAAAGAAATAAATTCAGTTTG
AAAAGGTTGGCGATTGTGTACTTCCATTTGAAATCAGCATCTTGGGTTGT
ATCCTGGAACATTAGCAACAAAGGATCGACGACCAAAAAGGCCTTGTTTG
TCCAATTCAAAATGCCATTGTAGACGAGCGCCTGTCCGCTGCCAAAGCTC
AGGTGAAACAAGAAGGCAAGGAAATACCTCTGATTTTTATGGCCAATGCA
ACTGGCAAAGAAGGTGCAGTGGTGATCCCGCTTCAGAATGCAAATGTTGC
ACAAACTACAGTGCCAGGACCTCGGTGGCACCAGCTTTTGGCATGTGGAG
CAGTAGTGCCACAGGTGAGCCTCACCTGCCACAGGATACTGTCTTTCCAG
AACTAAGCTATCGACTGAGGTATTGGTCATACAGCCGAGCCACCAGTTGC
CCAATATATTGATGACTGTATAAATTCCCATAAACCAACACAATTTGTGC
CATATACCATGGGGATCAGTTATTTGCGGCAAAACGTAGCATAATTCATA
GACAAACAGCAATCCAATCAGACAGAGTAAAAATATTGCACAAAACGGAT
GAAGTAGGCCCATAACTTTTATGCGATGTAGTTGAAAGTGACGATGAAAC
CCTTTCTCCGCTCGAAAACACAT

BO05065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 52..906 873..19 4225 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 128..982 873..19 4245 99.8 Minus
CG17197-RB 1958 CG17197-RB 429..531 530..428 215 80.6 Minus
CG17198-RB 1958 CG17198-RB 429..531 530..428 215 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777324..25778178 19..873 4245 99.8 Plus
3R 32079331 3R 25774839..25774941 428..530 215 80.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:47:33 has no hits.

BO05065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:33 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 52..909 15..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:50 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 52..909 15..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:29 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 128..989 10..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:14 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 128..989 10..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:14 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777316..25778178 10..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:29 Download gff for BO05065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603038..21603900 10..873 99   Plus

BO05065.5prime Sequence

862 bp (723 high quality bases) assembled on 2005-12-02

> BO05065.5prime
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAAAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCT

BO05065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 1..846 17..862 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 77..922 17..862 4215 99.9 Plus
CG17197-RB 1958 CG17197-RB 429..531 411..513 215 80.6 Plus
CG17198-RB 1958 CG17198-RB 429..531 411..513 215 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777384..25778229 862..17 4215 99.9 Minus
3R 32079331 3R 25774839..25774941 513..411 215 80.6 Minus
Blast to na_te.dros performed on 2015-02-13 15:28:39 has no hits.

BO05065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:34 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:52 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:35 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..922 17..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:55:12 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..922 17..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:55:12 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777384..25778229 17..862 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:35 Download gff for BO05065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603106..21603951 17..862 99   Minus

BO05065.complete Sequence

940 bp (940 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629967

> BO05065.complete
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTCCTACCGATGGCACTCA
GTGGTTCCAGAAGCAGACAGTGGCAAGCTTTCTAGACCAT

BO05065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 909 CG4956-PA 1..906 17..922 4530 100 Plus
CG17197-RB 873 CG17197-PB 341..443 411..513 215 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 77..982 17..922 4530 100 Plus
CG17197-RB 1958 CG17197-RB 429..531 411..513 215 80.6 Plus
CG17198-RB 1958 CG17198-RB 429..531 411..513 215 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777324..25778229 922..17 4530 100 Minus
3R 32079331 3R 25774839..25774941 513..411 215 80.6 Minus
Blast to na_te.dros performed on 2014-11-27 16:45:18 has no hits.

BO05065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:18 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:15 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..989 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:53 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..982 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:18 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..989 17..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:06 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..982 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:06 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25777322..25778229 17..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:53 Download gff for BO05065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603044..21603951 17..924 99   Minus

BO05065.pep Sequence

Translation from 16 to 940

> BO05065.pep
MLRFRVLLRSTCGWSRRMCFRAEEGFHRHFQLHRIKVMGLLHPFCAIFLL
CLIGLLFVYELCYVLPQITDPHGIWHKLCWFMGIYTVINILGNWWLGCMT
NTSVDSLVLERQYPVAGEAHLWHYCSTCQKLVPPRSWHCSLCNICILKRD
HHCTFFASCIGHKNQRYFLAFLFHLSFGSGQALVYNGILNWTNKAFLVVD
PLLLMFQDTTQDADFKWKYTIANLFKLNLFLFGVPLFMFVFQMIMVYRNS
TCYKMLDRSYDVGWRRNFDMVLGKRRFWIFFSPTISSPLPTDGTQWFQKQ
TVASFLDH

BO05065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 302 CG4956-PA 1..302 1..302 1695 100 Plus
CG17196-PA 276 CG17196-PA 14..274 32..300 546 40.9 Plus
CG17197-PB 290 CG17197-PB 24..271 42..296 542 42 Plus
CG17196-PC 253 CG17196-PC 22..251 63..300 510 42.4 Plus
CG13029-PC 288 CG13029-PC 22..288 40..305 505 39.3 Plus