Clone Sequence Records
BO05065.3prime Sequence
873 bp (749 high quality bases) assembled on 2005-12-02
> BO05065.3prime
ATGGTCTAGAAAGCTTGCCACTGTCTGCTTCTGGAACCACTGAGTGCCAT
CGGTAGGAAGAGGACTTGAGATCGTTGGAGAGAAAAAAATCCAGAAGCGC
CGTTTTCCCAAGACCATATCAAAATTTCTTCTCCAACCAACATCATAGCT
GCGATCGAGCATCTTATAGCATGTACTATTCCGATATACCATTATCATTT
GAAAGACGAACATGAAGAGGGGGACGCCAAAAAGAAATAAATTCAGTTTG
AAAAGGTTGGCGATTGTGTACTTCCATTTGAAATCAGCATCTTGGGTTGT
ATCCTGGAACATTAGCAACAAAGGATCGACGACCAAAAAGGCCTTGTTTG
TCCAATTCAAAATGCCATTGTAGACGAGCGCCTGTCCGCTGCCAAAGCTC
AGGTGAAACAAGAAGGCAAGGAAATACCTCTGATTTTTATGGCCAATGCA
ACTGGCAAAGAAGGTGCAGTGGTGATCCCGCTTCAGAATGCAAATGTTGC
ACAAACTACAGTGCCAGGACCTCGGTGGCACCAGCTTTTGGCATGTGGAG
CAGTAGTGCCACAGGTGAGCCTCACCTGCCACAGGATACTGTCTTTCCAG
AACTAAGCTATCGACTGAGGTATTGGTCATACAGCCGAGCCACCAGTTGC
CCAATATATTGATGACTGTATAAATTCCCATAAACCAACACAATTTGTGC
CATATACCATGGGGATCAGTTATTTGCGGCAAAACGTAGCATAATTCATA
GACAAACAGCAATCCAATCAGACAGAGTAAAAATATTGCACAAAACGGAT
GAAGTAGGCCCATAACTTTTATGCGATGTAGTTGAAAGTGACGATGAAAC
CCTTTCTCCGCTCGAAAACACAT
BO05065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 909 | CG4956-RA | 52..906 | 873..19 | 4225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 128..982 | 873..19 | 4245 | 99.8 | Minus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 530..428 | 215 | 80.6 | Minus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 530..428 | 215 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777324..25778178 | 19..873 | 4245 | 99.8 | Plus |
3R | 32079331 | 3R | 25774839..25774941 | 428..530 | 215 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:47:33 has no hits.
BO05065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:33 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 52..909 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:50 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 52..909 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:29 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 128..989 | 10..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:14 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 128..989 | 10..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:14 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777316..25778178 | 10..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:29 Download gff for
BO05065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603038..21603900 | 10..873 | 99 | | Plus |
BO05065.5prime Sequence
862 bp (723 high quality bases) assembled on 2005-12-02
> BO05065.5prime
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAAAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCT
BO05065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 909 | CG4956-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 77..922 | 17..862 | 4215 | 99.9 | Plus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777384..25778229 | 862..17 | 4215 | 99.9 | Minus |
3R | 32079331 | 3R | 25774839..25774941 | 513..411 | 215 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:28:39 has no hits.
BO05065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:34 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:52 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:35 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..922 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:55:12 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..922 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:55:12 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777384..25778229 | 17..862 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:35 Download gff for
BO05065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603106..21603951 | 17..862 | 99 | | Minus |
BO05065.complete Sequence
940 bp (940 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629967
> BO05065.complete
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTCCTACCGATGGCACTCA
GTGGTTCCAGAAGCAGACAGTGGCAAGCTTTCTAGACCAT
BO05065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 909 | CG4956-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
CG17197-RB | 873 | CG17197-PB | 341..443 | 411..513 | 215 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 77..982 | 17..922 | 4530 | 100 | Plus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777324..25778229 | 922..17 | 4530 | 100 | Minus |
3R | 32079331 | 3R | 25774839..25774941 | 513..411 | 215 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:45:18 has no hits.
BO05065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:18 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:15 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..989 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:53 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..982 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:18 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..989 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:06 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..982 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:06 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777322..25778229 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:53 Download gff for
BO05065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603044..21603951 | 17..924 | 99 | | Minus |
BO05065.pep Sequence
Translation from 16 to 940
> BO05065.pep
MLRFRVLLRSTCGWSRRMCFRAEEGFHRHFQLHRIKVMGLLHPFCAIFLL
CLIGLLFVYELCYVLPQITDPHGIWHKLCWFMGIYTVINILGNWWLGCMT
NTSVDSLVLERQYPVAGEAHLWHYCSTCQKLVPPRSWHCSLCNICILKRD
HHCTFFASCIGHKNQRYFLAFLFHLSFGSGQALVYNGILNWTNKAFLVVD
PLLLMFQDTTQDADFKWKYTIANLFKLNLFLFGVPLFMFVFQMIMVYRNS
TCYKMLDRSYDVGWRRNFDMVLGKRRFWIFFSPTISSPLPTDGTQWFQKQ
TVASFLDH
BO05065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 302 | CG4956-PA | 1..302 | 1..302 | 1695 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 14..274 | 32..300 | 546 | 40.9 | Plus |
CG17197-PB | 290 | CG17197-PB | 24..271 | 42..296 | 542 | 42 | Plus |
CG17196-PC | 253 | CG17196-PC | 22..251 | 63..300 | 510 | 42.4 | Plus |
CG13029-PC | 288 | CG13029-PC | 22..288 | 40..305 | 505 | 39.3 | Plus |