Clone Sequence Records
BO05066.3prime Sequence
846 bp (731 high quality bases) assembled on 2005-12-02
> BO05066.3prime
ATGGTCTAGAAAGCTTGCATCCGATTTAGTGCCGCATAGGGTTCGCCGCA
GGTGTCGCCCAAGACTGGACTTTTGTGTGTATCGGGTTGAGCAGTGTGAA
CACTTGTAGGGTTTTTCCCCCGTATGCGTTCGCAAGTGTTCCTGGTGTTC
TGCGCTTCTCGCAAACAATTTTGAGCAGTGCGAACACTTGAAGGGCAATT
CTCCCGTGTGCGTTCGCAAATGCATGTGAAGAGTCGAGCTAGTTGTATAG
GACTTCGAGCAGTGGGGACACTCGAATTGGTTTTTTCCAGTATGCTCTTG
CAGGTGCACCAGCAGTTGCGAGCTTAGTTTAAACTCCTTCGAGCAGTAGG
AACACTTGGGTACCTTTTCTCCAATATGATCAAGCATATGCACCCGAAGA
TGCGTACGACATTTGAAGTCCTTGAAACAGTGGGTACACTTAAAGGGCCG
CTCTCCCGTATGCACTTGCTGATGCTCCACAAGATGTGACTTCTTGAAGA
AAGATTTCGAGCATTCGGCGCACTTGTACTGTCGCTCTCTTGTATGCAAA
CGCACGTGGACTCGATAAAGTGACCTCATGGCAAAGGTGGCTGAGCACTG
GGAACACTTCAGGGGCTCTTTTCCAGCGTGCTCAAGTAAGTGTAGTTGAA
GTCTCGAATTCCTTGCAAAGGTCTCTGAGCAATGGGGACACTTGAACGGG
TCTTCGCCCGCGTGCACTCGCAAATGAATTTGCAAACTATCATTCTGCAG
AAAAGTCTTCGGGCACTGGGTACACTTAAAGGATCGTTCGGCGTGCGTCA
GCAAGTGCTTTTGTAGAATTGATCTTAGCTTAAAACTCTTTGAGCA
BO05066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 1506 | CG5245-RA | 676..1503 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 733..1560 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430345..12431172 | 846..19 | 4140 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1342..1379 | 846..809 | 109 | 76.3 | Minus |
BO05066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:35 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 677..1506 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:53 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 677..1506 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:38 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 734..1563 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:56:50 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 734..1563 | 15..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:56:50 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12430346..12431175 | 15..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:38 Download gff for
BO05066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8256068..8256897 | 15..845 | 99 | | Minus |
BO05066.5prime Sequence
913 bp (768 high quality bases) assembled on 2005-12-02
> BO05066.5prime
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGGTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGGTTGCAT
BO05066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 1506 | CG5245-RA | 413..978 | 348..913 | 2780 | 99.6 | Plus |
CG5245-PA | 1506 | CG5245-RA | 1..347 | 17..363 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 470..1035 | 348..913 | 2800 | 99.6 | Plus |
CG5245-RA | 1623 | CG5245-RA | 58..414 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430082..12430647 | 348..913 | 2800 | 99.6 | Plus |
3R | 32079331 | 3R | 12429670..12430026 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-12 10:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1342..1379 | 611..648 | 109 | 76.3 | Plus |
BO05066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:36 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 1..334 | 17..349 | 99 | | Plus |
CG5245-PA | 415..978 | 350..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:54 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-PA | 415..978 | 350..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:43 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 44..391 | 1..349 | 98 | -> | Plus |
CG5245-RA | 472..1035 | 350..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:16 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 44..391 | 1..349 | 98 | -> | Plus |
CG5245-RA | 472..1035 | 350..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:16 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12429662..12430003 | 8..349 | 98 | -> | Plus |
3R | 12430084..12430647 | 350..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:43 Download gff for
BO05066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8255384..8255725 | 8..349 | 98 | -> | Plus |
arm_3R | 8255806..8256369 | 350..913 | 99 | | Plus |
BO05066.complete Sequence
1456 bp (1456 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629968
> BO05066.complete
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGTTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGTTTGCATACAAGAGAGCGACAGTACAAGTGCGCCGAATGCTCGA
AATCTTTCTTCAAGAAGTCACATCTTGTGGAGCATCAGCAAGTGCATACG
GGAGAGCGGCCCTTTAAGTGTACCCACTGTTTCAAGGACTTCAAATGTCG
TACGCATCTTCGGGTGCATATGCTTGATCATATTGGAGAAAAGGTACCCA
AGTGTTCCTACTGCTCGAAGGAGTTTAAACTAAGCTCGCAACTGCTGGTG
CACCTGCAAGAGCATACTGGAAAAAACCAATTCGAGTGTCCCCACTGCTC
GAAGTCCTATACAACTAGCTCGACTCTTCACATGCATTTGCGAACGCACA
CGGGAGAATTGCCCTTCAAGTGTTCGCACTGCTCAAAATTGTTTGCGAGA
AGCGCAGAACACCAGGAACACTTGCGAACGCATACGGGGGAAAAACCCTA
CAAGTGTTCACACTGCTCAACCCGATACACACAAAAGTCCAGTCTTGGGC
GACACCTGCGGCGAACCCTATGCGGCACTAAATCGGATGCAAGCTTTCTA
GACCAT
BO05066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1506 | CG5245-PA | 413..1503 | 348..1438 | 5455 | 100 | Plus |
CG5245-RA | 1506 | CG5245-PA | 1..357 | 17..373 | 1740 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 470..1560 | 348..1438 | 5455 | 100 | Plus |
CG5245-RA | 1623 | CG5245-RA | 58..414 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430082..12431172 | 348..1438 | 5455 | 100 | Plus |
3R | 32079331 | 3R | 12429670..12430026 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:32 has no hits.
BO05066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:19 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-RA | 415..1506 | 350..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:18 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 19..366 | 1..349 | 98 | -> | Plus |
CG5245-RA | 447..1538 | 350..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:33 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 58..391 | 17..349 | 99 | -> | Plus |
CG5245-RA | 472..1560 | 350..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:20 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-RA | 415..1506 | 350..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:47 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 58..391 | 17..349 | 99 | -> | Plus |
CG5245-RA | 472..1560 | 350..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:47 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12429670..12430003 | 17..349 | 99 | -> | Plus |
3R | 12430084..12431172 | 350..1440 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:33 Download gff for
BO05066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8255392..8255725 | 17..349 | 99 | -> | Plus |
arm_3R | 8255806..8256894 | 350..1440 | 99 | | Plus |
BO05066.pep Sequence
Translation from 16 to 1456
> BO05066.pep
MDLANVDQRPVKDEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGK
DLEPVKGVPSKLKTCKSKIAKKRPLRKQTDTFKCTQCQKTFTRKENLESH
LRLHAEERPFECSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARK
SHLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCS
KSFKLRSILQKHLLTHAERSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFK
CPHCSETFARNSRLQLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHT
RERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTHLRV
HMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHCSKSYTT
SSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHC
STRYTQKSSLGRHLRRTLCGTKSDASFLDH
BO05066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 501 | CG5245-PA | 1..501 | 1..474 | 2574 | 94.6 | Plus |
crol-PI | 962 | CG14938-PI | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PE | 962 | CG14938-PE | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PA | 962 | CG14938-PA | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PB | 891 | CG14938-PB | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PI | 962 | CG14938-PI | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PE | 962 | CG14938-PE | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PB | 891 | CG14938-PB | 298..686 | 76..457 | 829 | 38.8 | Plus |
crol-PB | 891 | CG14938-PB | 277..674 | 82..477 | 824 | 36.2 | Plus |
crol-PI | 962 | CG14938-PI | 277..674 | 82..477 | 824 | 36.2 | Plus |
crol-PE | 962 | CG14938-PE | 277..674 | 82..477 | 824 | 36.2 | Plus |
crol-PB | 891 | CG14938-PB | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PI | 962 | CG14938-PI | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PE | 962 | CG14938-PE | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PI | 962 | CG14938-PI | 388..722 | 59..381 | 681 | 38.5 | Plus |
crol-PE | 962 | CG14938-PE | 388..722 | 59..381 | 681 | 38.5 | Plus |
crol-PB | 891 | CG14938-PB | 388..686 | 59..345 | 612 | 38.1 | Plus |
crol-PI | 962 | CG14938-PI | 444..724 | 59..327 | 522 | 34.9 | Plus |
crol-PE | 962 | CG14938-PE | 444..724 | 59..327 | 522 | 34.9 | Plus |