Clone BO05066 Report

Search the DGRC for BO05066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:66
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO05066.pep: validated not full length
Sequenced Size:1456

Clone Sequence Records

BO05066.3prime Sequence

846 bp (731 high quality bases) assembled on 2005-12-02

> BO05066.3prime
ATGGTCTAGAAAGCTTGCATCCGATTTAGTGCCGCATAGGGTTCGCCGCA
GGTGTCGCCCAAGACTGGACTTTTGTGTGTATCGGGTTGAGCAGTGTGAA
CACTTGTAGGGTTTTTCCCCCGTATGCGTTCGCAAGTGTTCCTGGTGTTC
TGCGCTTCTCGCAAACAATTTTGAGCAGTGCGAACACTTGAAGGGCAATT
CTCCCGTGTGCGTTCGCAAATGCATGTGAAGAGTCGAGCTAGTTGTATAG
GACTTCGAGCAGTGGGGACACTCGAATTGGTTTTTTCCAGTATGCTCTTG
CAGGTGCACCAGCAGTTGCGAGCTTAGTTTAAACTCCTTCGAGCAGTAGG
AACACTTGGGTACCTTTTCTCCAATATGATCAAGCATATGCACCCGAAGA
TGCGTACGACATTTGAAGTCCTTGAAACAGTGGGTACACTTAAAGGGCCG
CTCTCCCGTATGCACTTGCTGATGCTCCACAAGATGTGACTTCTTGAAGA
AAGATTTCGAGCATTCGGCGCACTTGTACTGTCGCTCTCTTGTATGCAAA
CGCACGTGGACTCGATAAAGTGACCTCATGGCAAAGGTGGCTGAGCACTG
GGAACACTTCAGGGGCTCTTTTCCAGCGTGCTCAAGTAAGTGTAGTTGAA
GTCTCGAATTCCTTGCAAAGGTCTCTGAGCAATGGGGACACTTGAACGGG
TCTTCGCCCGCGTGCACTCGCAAATGAATTTGCAAACTATCATTCTGCAG
AAAAGTCTTCGGGCACTGGGTACACTTAAAGGATCGTTCGGCGTGCGTCA
GCAAGTGCTTTTGTAGAATTGATCTTAGCTTAAAACTCTTTGAGCA

BO05066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 1506 CG5245-RA 676..1503 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 733..1560 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430345..12431172 846..19 4140 100 Minus
Blast to na_te.dros performed 2015-02-13 15:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1342..1379 846..809 109 76.3 Minus

BO05066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:35 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 677..1506 15..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:53 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 677..1506 15..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:38 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 734..1563 15..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:56:50 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 734..1563 15..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:56:50 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12430346..12431175 15..845 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:38 Download gff for BO05066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8256068..8256897 15..845 99   Minus

BO05066.5prime Sequence

913 bp (768 high quality bases) assembled on 2005-12-02

> BO05066.5prime
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGGTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGGTTGCAT

BO05066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 1506 CG5245-RA 413..978 348..913 2780 99.6 Plus
CG5245-PA 1506 CG5245-RA 1..347 17..363 1735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 470..1035 348..913 2800 99.6 Plus
CG5245-RA 1623 CG5245-RA 58..414 17..373 1740 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430082..12430647 348..913 2800 99.6 Plus
3R 32079331 3R 12429670..12430026 17..373 1740 99.2 Plus
Blast to na_te.dros performed 2015-02-12 10:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1342..1379 611..648 109 76.3 Plus

BO05066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:36 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 1..334 17..349 99   Plus
CG5245-PA 415..978 350..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:54 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 1..334 17..349 99 -> Plus
CG5245-PA 415..978 350..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:43 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 44..391 1..349 98 -> Plus
CG5245-RA 472..1035 350..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:16 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 44..391 1..349 98 -> Plus
CG5245-RA 472..1035 350..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:16 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12429662..12430003 8..349 98 -> Plus
3R 12430084..12430647 350..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:43 Download gff for BO05066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8255384..8255725 8..349 98 -> Plus
arm_3R 8255806..8256369 350..913 99   Plus

BO05066.complete Sequence

1456 bp (1456 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629968

> BO05066.complete
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGTTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGTTTGCATACAAGAGAGCGACAGTACAAGTGCGCCGAATGCTCGA
AATCTTTCTTCAAGAAGTCACATCTTGTGGAGCATCAGCAAGTGCATACG
GGAGAGCGGCCCTTTAAGTGTACCCACTGTTTCAAGGACTTCAAATGTCG
TACGCATCTTCGGGTGCATATGCTTGATCATATTGGAGAAAAGGTACCCA
AGTGTTCCTACTGCTCGAAGGAGTTTAAACTAAGCTCGCAACTGCTGGTG
CACCTGCAAGAGCATACTGGAAAAAACCAATTCGAGTGTCCCCACTGCTC
GAAGTCCTATACAACTAGCTCGACTCTTCACATGCATTTGCGAACGCACA
CGGGAGAATTGCCCTTCAAGTGTTCGCACTGCTCAAAATTGTTTGCGAGA
AGCGCAGAACACCAGGAACACTTGCGAACGCATACGGGGGAAAAACCCTA
CAAGTGTTCACACTGCTCAACCCGATACACACAAAAGTCCAGTCTTGGGC
GACACCTGCGGCGAACCCTATGCGGCACTAAATCGGATGCAAGCTTTCTA
GACCAT

BO05066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1506 CG5245-PA 413..1503 348..1438 5455 100 Plus
CG5245-RA 1506 CG5245-PA 1..357 17..373 1740 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 470..1560 348..1438 5455 100 Plus
CG5245-RA 1623 CG5245-RA 58..414 17..373 1740 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430082..12431172 348..1438 5455 100 Plus
3R 32079331 3R 12429670..12430026 17..373 1740 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:32 has no hits.

BO05066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:19 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 1..334 17..349 99 -> Plus
CG5245-RA 415..1506 350..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:18 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 19..366 1..349 98 -> Plus
CG5245-RA 447..1538 350..1442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:33 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 58..391 17..349 99 -> Plus
CG5245-RA 472..1560 350..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:20 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 1..334 17..349 99 -> Plus
CG5245-RA 415..1506 350..1442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:47 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 58..391 17..349 99 -> Plus
CG5245-RA 472..1560 350..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:47 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12429670..12430003 17..349 99 -> Plus
3R 12430084..12431172 350..1440 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:33 Download gff for BO05066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8255392..8255725 17..349 99 -> Plus
arm_3R 8255806..8256894 350..1440 99   Plus

BO05066.pep Sequence

Translation from 16 to 1456

> BO05066.pep
MDLANVDQRPVKDEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGK
DLEPVKGVPSKLKTCKSKIAKKRPLRKQTDTFKCTQCQKTFTRKENLESH
LRLHAEERPFECSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARK
SHLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCS
KSFKLRSILQKHLLTHAERSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFK
CPHCSETFARNSRLQLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHT
RERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTHLRV
HMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHCSKSYTT
SSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHC
STRYTQKSSLGRHLRRTLCGTKSDASFLDH

BO05066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 501 CG5245-PA 1..501 1..474 2574 94.6 Plus
crol-PI 962 CG14938-PI 298..722 76..465 849 36.5 Plus
crol-PE 962 CG14938-PE 298..722 76..465 849 36.5 Plus
crol-PA 962 CG14938-PA 298..722 76..465 849 36.5 Plus
crol-PB 891 CG14938-PB 240..640 73..472 848 36.7 Plus
crol-PI 962 CG14938-PI 240..640 73..472 848 36.7 Plus
crol-PE 962 CG14938-PE 240..640 73..472 848 36.7 Plus
crol-PB 891 CG14938-PB 298..686 76..457 829 38.8 Plus
crol-PB 891 CG14938-PB 277..674 82..477 824 36.2 Plus
crol-PI 962 CG14938-PI 277..674 82..477 824 36.2 Plus
crol-PE 962 CG14938-PE 277..674 82..477 824 36.2 Plus
crol-PB 891 CG14938-PB 218..606 79..466 820 35.5 Plus
crol-PI 962 CG14938-PI 218..606 79..466 820 35.5 Plus
crol-PE 962 CG14938-PE 218..606 79..466 820 35.5 Plus
crol-PI 962 CG14938-PI 388..722 59..381 681 38.5 Plus
crol-PE 962 CG14938-PE 388..722 59..381 681 38.5 Plus
crol-PB 891 CG14938-PB 388..686 59..345 612 38.1 Plus
crol-PI 962 CG14938-PI 444..724 59..327 522 34.9 Plus
crol-PE 962 CG14938-PE 444..724 59..327 522 34.9 Plus