Clone BO05067 Report

Search the DGRC for BO05067

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptB-H2-RA
Protein status:BO05067.pep: validated full length
Sequenced Size:1969

Clone Sequence Records

BO05067.3prime Sequence

945 bp (845 high quality bases) assembled on 2005-12-02

> BO05067.3prime
ATGGTCTAGAAAGCTTGCGACCTCCAGGGCCAGTTCCTCCTCATCATCCT
CGTCCCGCTCTCGTTCCCTTTCGCGCTCCCGCTCGATGTCTCGCTCCTCG
TCCCGCTCCCTGTCCTCCTCCTCGTTGATGCGCTCCCGATGCGGCGGGCT
ACCCGGATTCAGGGGCGGACTGGGCGTGATTAGACGCTGGCGACTGCTGC
TGCTGGTCCGCTCGCAGTCCGCTTCGCTATTGGCGCTCTGGCTGGTCGCT
GGGGAGCGGGAAGCTGCTGGCGGCTGTTGCTGCTGCTGTTGGGCACCGGC
GGATGCGGCCGCTGCCGCAGCAGCGGCATAGTAGCCGCTGAGCATGGGTG
CTGCGCCGGGTGGCGGGGGAGCGGGCATGCCCGGTAGCGACATGCCCGGC
GGTATGCTTGATTGATACATGCGGTACGAGGCGGGAAGCGAAGGCTTTTG
CATGGCCGCTGCAGCGGCTGCCTGGCGGTAATAGATATCGATCGCGGAGG
GCGTGGCCCCGTGGGGCGATTGGGCGGCAGCGGCGGCCGCGTATGGCCAG
GCGCTCAAATAGGGCGTGGCACCGCCGTAAAGCCGCTGGAAGGCCGCATA
GTTTCCAGCCTCGGCCAGCAGTTCCAAGCCAACCGCCGTCTGACGCTTCC
ATTTGGTTCTGCGATTCTGGTACCAGGTCTTCACCTGGCAGTCGCTCAGC
TCCAGCTTGTTGGCCAGCTCCATGCGATCCTGCACGCTGAGGTACTTCTG
CCGCTCGAAGGACTTCTCCAGCGTCTGCAGCTGGTGATCCGTGAAGGCGG
TACGCGCCTTTCGCTGCTTCTTGCTGAGGCTCAGGCTCAAGTGCGACGAG
GAGTCGCCGTTTGCCGAGCTGCCGTTTTTCATACTGTCATCTCCATCGTC
GTCTTTGCCACCGCAATCATCGCTGTCGCTGTCGTCGATTGTGCT

BO05067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5488-PA 1938 B-H2-RA 1009..1935 945..19 4635 100 Minus
CG5529-PA 1635 B-H1-RA 886..1067 825..644 560 92.3 Minus
CG11085-PA 828 CG11085-RA 547..590 687..644 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 3102 CG5488-RA 1298..2224 945..19 4635 100 Minus
B-H2-RB 3142 CG5488-RB 1371..2264 912..19 4470 100 Minus
B-H1-RB 2724 CG5529-RB 1107..1483 825..443 960 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17322650..17323297 666..19 3225 99.8 Minus
X 23542271 X 17320838..17321091 912..659 1270 100 Minus
X 23542271 X 17401527..17401693 825..659 625 91.6 Minus
X 23542271 X 17401824..17402037 662..443 275 78 Minus
Blast to na_te.dros performed 2015-02-13 02:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6891 361..195 171 61.1 Minus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 739..771 188..220 111 81.8 Plus

BO05067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:37 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-PA 1009..1938 16..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:56 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5488-PA 1009..1938 16..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:02 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1298..2224 19..945 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:51:06 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1298..2224 19..945 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:51:06 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17315878..17315911 912..945 100 -> Minus
X 17320839..17321091 659..911 100 -> Minus
X 17322658..17323297 19..658 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:02 Download gff for BO05067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17209911..17209944 912..945 100 -> Minus
arm_X 17214872..17215124 659..911 100 -> Minus
arm_X 17216691..17217330 19..658 100   Minus

BO05067.5prime Sequence

897 bp (814 high quality bases) assembled on 2005-12-02

> BO05067.5prime
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACATTGGGCGGTAACGGTGGCAATAACAACAACA
ATAACAACAACAGCAGCAGTGCCAGTAACAACAACAACAACAAACAC

BO05067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5488-PA 1938 B-H2-RA 1..803 17..819 4015 100 Plus
CG5488-PA 1938 B-H2-RA 804..878 819..893 375 100 Plus
CG5058-PG 2190 grh-RG 420..485 334..399 180 90.9 Plus
CG5058-PC 3909 grh-RC 2232..2297 334..399 180 90.9 Plus
CG5058-PD 4002 grh-RD 2232..2297 334..399 180 90.9 Plus
CG8765-PB 1803 CG8765-RB 349..392 587..630 170 95.4 Plus
CG6064-PA 2394 TORC-RA 1930..1998 332..400 170 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RB 3142 CG5488-RB 288..1167 15..893 4375 99.9 Plus
B-H2-RA 3102 CG5488-RA 288..1167 15..893 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17314868..17315747 15..893 4350 99.9 Plus
Blast to na_te.dros performed 2015-02-13 02:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2994 212..897 214 52.4 Plus
TART-A 13424 TART-A 13424bp 11094..11151 215..271 116 71.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..713 313..228 113 64 Minus

BO05067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:38 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-PA 1..880 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:58 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5488-PA 1..880 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:04 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..1169 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:51:39 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..1169 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:51:39 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17314865..17315749 9..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:04 Download gff for BO05067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17208898..17209782 9..897 99   Plus

BO05067.complete Sequence

1969 bp (1969 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629969

> BO05067.complete
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACAATTGGGCGGTAACGGTGGCAATAACAACAAC
AATAACAACAACAGCAGCAGTGCCAGTAACAACAACAACAACAACAACAA
CAGTGCTAGTGCCAACAGCAACATCATCAGCGGCAACAGCAGCAGCAGCA
ACAACAACAATGGCAGTGGCAACGGCAACATGTTGCTCGGAGGACCCGGC
AGCAGCATTAGCGGCGATCAAGCCAGCACAATCGACGACAGCGACAGCGA
TGATTGCGGTGGCAAAGACGACGATGGAGATGACAGTATGAAAAACGGCA
GCTCGGCAAACGGCGACTCCTCGTCGCACTTGAGCCTGAGCCTCAGCAAG
AAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGCAGACGCT
GGAGAAGTCCTTCGAGCGGCAGAAGTACCTCAGCGTGCAGGATCGCATGG
AGCTGGCCAACAAGCTGGAGCTGAGCGACTGCCAGGTGAAGACCTGGTAC
CAGAATCGCAGAACCAAATGGAAGCGTCAGACGGCGGTTGGCTTGGAACT
GCTGGCCGAGGCTGGAAACTATGCGGCCTTCCAGCGGCTTTACGGCGGTG
CCACGCCCTATTTGAGCGCCTGGCCATACGCGGCCGCCGCTGCCGCCCAA
TCGCCCCACGGGGCCACGCCCTCCGCGATCGATATCTATTACCGCCAGGC
AGCCGCTGCAGCGGCCATGCAAAAGCCTTCGCTTCCCGCCTCGTACCGCA
TGTATCAATCAAGCATACCGCCGGGCATGTCGCTACCGGGCATGCCCGCT
CCCCCGCCACCCGGCGCAGCACCCATGCTCAGCGGCTACTATGCCGCTGC
TGCGGCAGCGGCCGCATCCGCCGGTGCCCAACAGCAGCAGCAACAGCCGC
CAGCAGCTTCCCGCTCCCCAGCGACCAGCCAGAGCGCCAATAGCGAAGCG
GACTGCGAGCGGACCAGCAGCAGCAGTCGCCAGCGTCTAATCACGCCCAG
TCCGCCCCTGAATCCGGGTAGCCCGCCGCATCGGGAGCGCATCAACGAGG
AGGAGGACAGGGAGCGGGACGAGGAGCGAGACATCGAGCGGGAGCGCGAA
AGGGAACGAGAGCGGGACGAGGATGATGAGGAGGAACTGGCCCTGGAGGT
CGCAAGCTTTCTAGACCAT

BO05067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 1938 CG5488-PA 1..1935 17..1951 9675 100 Plus
B-H2-RB 912 CG5488-PB 16..909 1058..1951 4470 100 Plus
B-H1-RA 1635 CG5529-PA 886..1262 1145..1527 880 83.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 3102 CG5488-RA 288..2224 15..1951 9685 100 Plus
B-H2-RB 3142 CG5488-RB 288..1332 15..1059 5225 100 Plus
B-H2-RB 3142 CG5488-RB 1371..2264 1058..1951 4470 100 Plus
B-H1-RB 2724 CG5529-RB 1107..1483 1145..1527 880 83.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17314868..17315913 15..1060 5230 100 Plus
X 23542271 X 17322650..17323297 1304..1951 3225 99.8 Plus
X 23542271 X 17320838..17321091 1058..1311 1270 100 Plus
X 23542271 X 17401527..17401693 1145..1311 625 91.6 Plus
X 23542271 X 17401824..17402037 1308..1527 275 78 Plus
Blast to na_te.dros performed 2014-11-27 11:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2999 212..903 225 52.6 Plus
TART-A 13424 TART-A 13424bp 11094..11151 215..271 116 71.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..713 313..228 113 64 Minus

BO05067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:50 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1..1938 17..1954 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:51 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..2224 9..1951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:51 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 290..2224 17..1953 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:51 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..2224 9..1951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:06 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 290..2224 17..1953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:06 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
X 17314870..17315911 17..1058 100 -> Plus
X 17320839..17321091 1059..1311 100 -> Plus
X 17322658..17323297 1312..1953 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:51 Download gff for BO05067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17208903..17209944 17..1058 100 -> Plus
arm_X 17214872..17215124 1059..1311 100 -> Plus
arm_X 17216691..17217330 1312..1953 99   Plus

BO05067.pep Sequence

Translation from 16 to 1969

> BO05067.pep
MTTMPPEMSATTAAPVGSAPSATAHHPAAVGGGMPRPASPAVGSNTTTAT
ATTATRSRFMITDILAGAAAASAAAAAAAAALAAASSGGGRGSPTDSERE
QSLVAQHHHHHQQQQQHHHHQQQQQQQQHQQAALQQYIVQQQQLLRFERE
REREREREHYRERHSPPGNNPYAHHPMPPHLLAHFPPAHYAVLQQQQQQQ
QQQQHPHPHHLQLERERLEALHRHGHGLTGDPAQHLSHLSHLSHQQHHPH
LHHPMHDERSRSPLMLQQLGGNGGNNNNNNNNSSSASNNNNNNNNSASAN
SNIISGNSSSSNNNNGSGNGNMLLGGPGSSISGDQASTIDDSDSDDCGGK
DDDGDDSMKNGSSANGDSSSHLSLSLSKKQRKARTAFTDHQLQTLEKSFE
RQKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAEAG
NYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPSAIDIYYRQAAAAAA
MQKPSLPASYRMYQSSIPPGMSLPGMPAPPPPGAAPMLSGYYAAAAAAAA
SAGAQQQQQQPPAASRSPATSQSANSEADCERTSSSSRQRLITPSPPLNP
GSPPHRERINEEEDRERDEERDIERERERERERDEDDEEELALEVASFLD
H

BO05067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-PA 645 CG5488-PA 1..645 1..645 3390 100 Plus
B-H2-PB 303 CG5488-PB 6..303 348..645 1535 100 Plus
B-H1-PA 544 CG5529-PA 11..541 95..617 744 39.8 Plus
Scr-PB 417 CG1030-PB 70..382 167..438 276 27.8 Plus
Scr-PA 417 CG1030-PA 70..382 167..438 276 27.8 Plus