Clone Sequence Records
BO05068.5prime Sequence
479 bp (478 high quality bases) assembled on 2005-12-02
> BO05068.5prime
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGGCAAGCTTTCTAGACC
BO05068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5927-PA | 450 | Her-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 614 | CG5927-RA | 25..471 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18204546..18204831 | 463..178 | 1430 | 100 | Minus |
| X | 23542271 | X | 18204958..18205120 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:34:06 has no hits.
BO05068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:40 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:00 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5927-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:19 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:38 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 9..463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:38 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18204546..18204830 | 179..463 | 100 | <- | Minus |
| X | 18204959..18205127 | 9..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:19 Download gff for
BO05068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18098579..18098863 | 179..463 | 100 | <- | Minus |
| arm_X | 18098992..18099160 | 9..178 | 97 | | Minus |
BO05068.3prime Sequence
479 bp (478 high quality bases) assembled on 2005-12-02
> BO05068.3prime
ATGGTCTAGAAAGCTTGCCCAGGGCCTCCAGAGATTTGGCTTGGATTTGG
ATGTGGAGGCCACAAGATGATCCAATTCTTTCGCAAATTCGAAACTCGGC
TGATAGCCGTTGTGTTGCAGAAATTGGGACACTTCCAGGACGCATTCTCG
AAAGCCACTCCAATAGCAATCAATTGGGCTCTGATATACTCCGGATGTAG
GCGCTGTGGTGGGCGTGGCCACCGGACAGTTTTTCTTGCTCAGGTGGTGA
ACTGCCAATTCCAGGACATCTCCCATATCCATTTTGGCCATGGTCTCGCC
GTCCAGATGCGACACCTCCTGAAGCAGGTCCTTAATAAAGTCCAGGCAGC
GATTGATGCGTGACCGCCTCTTCCTCTCCATCATTGGCTTAAAAACCTCT
CGATACTGATGAGATCGTGACTTTGCTCCAACATGAGACTTCTGCTCCTC
GGGACGTGCCATCATGTCGACTGATAACT
BO05068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5927-PA | 450 | Her-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 614 | CG5927-RA | 25..471 | 465..19 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18204546..18204831 | 19..304 | 1430 | 100 | Plus |
| X | 23542271 | X | 18204958..18205120 | 303..465 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:33:55 has no hits.
BO05068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:39 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:59 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5927-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:17 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 19..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:56 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 19..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:56 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18204546..18204830 | 19..303 | 100 | <- | Plus |
| X | 18204959..18205127 | 304..473 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:17 Download gff for
BO05068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18098579..18098863 | 19..303 | 100 | <- | Plus |
| arm_X | 18098992..18099160 | 304..473 | 97 | | Plus |
BO05068.complete Sequence
481 bp (481 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629970
> BO05068.complete
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGGCAAGCTTTCTAGACCAT
BO05068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 450 | CG5927-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 614 | CG5927-RA | 25..471 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18204546..18204831 | 463..178 | 1430 | 100 | Minus |
| X | 23542271 | X | 18204958..18205120 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:06 has no hits.
BO05068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:22 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:20 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:57 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 25..471 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:22 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:37 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 25..471 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:37 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18204544..18204830 | 179..465 | 99 | <- | Minus |
| X | 18204959..18205120 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:57 Download gff for
BO05068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18098577..18098863 | 179..465 | 99 | <- | Minus |
| arm_X | 18098992..18099153 | 17..178 | 100 | | Minus |
BO05068.pep Sequence
Translation from 16 to 481
> BO05068.pep
MMARPEEQKSHVGAKSRSHQYREVFKPMMERKRRSRINRCLDFIKDLLQE
VSHLDGETMAKMDMGDVLELAVHHLSKKNCPVATPTTAPTSGVYQSPIDC
YWSGFRECVLEVSQFLQHNGYQPSFEFAKELDHLVASTSKSKPNLWRPWA
SFLDH
BO05068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-PA | 149 | CG5927-PA | 1..149 | 1..149 | 802 | 100 | Plus |
| E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 8..114 | 16..116 | 188 | 37.4 | Plus |
| E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 10..108 | 16..116 | 185 | 39.6 | Plus |
| E(spl)m3-HLH-PA | 224 | CG8346-PA | 6..113 | 16..116 | 183 | 35.2 | Plus |
| E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 10..105 | 16..113 | 166 | 36.4 | Plus |
