Clone BO05070 Report

Search the DGRC for BO05070

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptOdsH-RA
Protein status:BO05070.pep: Imported from assembly
Sequenced Size:1180

Clone Sequence Records

BO05070.3prime Sequence

893 bp (729 high quality bases) assembled on 2005-09-08

> BO05070.3prime
ATGGTCTAGAAAGCTTGCCCCTCCCAACAGGGATTCGATGCTGAAGGGCG
AATTGTAGAGGGTCTTATTCTGCATCGGTGGCTGTGGTGGTGGCGGAGTT
TCCACTCTTCCCTGGAGTCCCATATCATTGGAATCCAGTTCGCTGCTGGT
GCTCTTCGTCTGGTACGTCCTGGAGGAGCAGAACGAGTGATCCAAACTGT
CGCCGGTCACGTACTCCGGTTCAACGCCCACCACATCGATGTGCAGATCA
TCGTAGCCATCATCATCCAGCCAGTTATTCTCATCCACTCCGTTCTCCTG
GTGGGCAGCTAGGTACTCGGCCTCCAGACGGGCATAGTCCACTTCCAATC
CCTTGTCCTGTAGCTTCTTCGCCTGCCGATCGATGGCTTTCTTCATCCGC
TTGCTGCGCTGGGCTAGTTCTCTGGCCCGAAGTTCGCTCAATGGAATGGG
GTCACCACTGCAGCTCTGGGGGTGGGCATTATGAGCTGGTCGTCCAGGAC
CCTTCTTGGTATGCTCCTGCTTACGCCATTTGGCACGACGATTCTGGAAC
CAAACCGCTATACGACCCTCCATTAGATCGAGTTTGGTGGCCAAGGCCTC
ACGCATGAAAATGTCAGGATAGTGACTTCCCTGGAAGACTCTCTCCAGCT
CCCTCAGCTGCCAGGAGTTGAAGTTGGTCCTGCCGCGTCGCTTCTTCGAG
GACTCTGTACAATCATTCTGCCCCAGATTGGAATCGGCCCCTTCATCGCT
TAGCGGATCTTGTTTGATCCCGCGACTAGAGCCCGCGTGGATGTTGTGCG
TGGGTGACACTGAGTCCAACTTAATACGCTGCTCACTGTGCGGATCCATG
CCAAGCTCCCGATTGAGATCCCTTTGCTGTTGCTGCTGCTGCT

BO05070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6352-PA 1149 OdsH-RA 272..1143 893..22 4360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 329..1200 893..22 4360 100 Minus
unc-4-RC 2995 CG6269-RC 1104..1339 678..443 400 78 Minus
unc-4-RB 2866 CG6269-RB 1104..1339 678..443 400 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17813529..17813922 415..22 1970 100 Minus
X 23542271 X 17811680..17811909 783..554 1150 100 Minus
X 23542271 X 17813309..17813449 556..416 705 100 Minus
X 23542271 X 17791338..17791449 893..782 560 100 Minus
X 23542271 X 17776415..17776528 556..443 240 80.7 Minus
X 23542271 X 17776153..17776243 678..588 230 83.5 Minus
Blast to na_te.dros performed on 2015-02-13 02:19:08 has no hits.

BO05070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:41 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 272..1149 15..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:02 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 272..1149 15..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:05 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 329..1206 15..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:52:36 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 329..1206 15..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:52:36 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17811681..17811907 556..782 100 -> Minus
X 17813310..17813449 416..555 100 -> Minus
X 17791338..17791448 783..893 100 -> Minus
X 17813529..17813928 15..415 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:05 Download gff for BO05070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685371..17685481 783..893 100 -> Minus
arm_X 17705714..17705940 556..782 100 -> Minus
arm_X 17707343..17707482 416..555 100 -> Minus
arm_X 17707562..17707961 15..415 99   Minus

BO05070.5prime Sequence

862 bp (756 high quality bases) assembled on 2005-12-02

> BO05070.5prime
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCC

BO05070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6352-PA 1149 OdsH-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 58..903 17..862 4230 100 Plus
unc-4-RC 2995 CG6269-RC 1104..1339 503..738 400 78 Plus
unc-4-RB 2866 CG6269-RB 1104..1339 503..738 400 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17791067..17791449 17..399 1915 100 Plus
X 23542271 X 17811680..17811909 398..627 1150 100 Plus
X 23542271 X 17813309..17813449 625..765 705 100 Plus
X 23542271 X 17813529..17813625 766..862 485 100 Plus
X 23542271 X 17776415..17776528 625..738 240 80.7 Plus
X 23542271 X 17776153..17776243 503..593 230 83.5 Plus
Blast to na_te.dros performed on 2015-02-13 13:38:56 has no hits.

BO05070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:41 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:03 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6352-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:12 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 50..903 10..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:58 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 50..903 10..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:58 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17791059..17791448 10..398 99 -> Plus
X 17811681..17811907 399..625 100 -> Plus
X 17813310..17813449 626..765 100 -> Plus
X 17813529..17813625 766..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:12 Download gff for BO05070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685092..17685481 10..398 99 -> Plus
arm_X 17705714..17705940 399..625 100 -> Plus
arm_X 17707343..17707482 626..765 100 -> Plus
arm_X 17707562..17707658 766..862 100   Plus

BO05070.complete Sequence

1180 bp assembled on 2008-11-10

> BO05070.complete
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAACGGAGTGGATGA
GAATAACTGGCTGGATGATGATGGCTACGATGATCTGCACATCGATGTGG
TGGGCGTTGAACCGGAGTACGTGACCGGCGACAGTTTGGATCACTCGTTC
TGCTCCTCCAGGACGTACCAGACGAAGAGCACCAGCAGCGAACTGGATTC
CAATGATATGGGACTCCAGGGAAGAGTGGAAACTCCGCCACCACCACAGC
CACCGATGCAGAATAAGACCCTCTACAATTCGCCCTTCAGCATCGAATCC
CTGTTGGGATCGGCAAGCTTTCTAGACCAT

BO05070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1149 CG6352-PA 1..1146 17..1162 5730 100 Plus
unc-4-RC 1767 CG6269-PC 742..977 503..738 400 78 Plus
unc-4-RB 1767 CG6269-PB 742..977 503..738 400 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-RA 1289 CG6352-RA 58..1203 17..1162 5730 100 Plus
unc-4-RC 2995 CG6269-RC 1104..1339 503..738 400 78 Plus
unc-4-RB 2866 CG6269-RB 1104..1339 503..738 400 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17813529..17813925 766..1162 1985 100 Plus
X 23542271 X 17791067..17791449 17..399 1915 100 Plus
X 23542271 X 17811680..17811909 398..627 1150 100 Plus
X 23542271 X 17813309..17813449 625..765 705 100 Plus
X 23542271 X 17776415..17776528 625..738 240 80.7 Plus
X 23542271 X 17776153..17776243 503..593 230 83.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:29:11 has no hits.

BO05070.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:53 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 10..1166 10..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:17 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 58..1203 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:26 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 18..1163 17..1164 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:37 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
OdsH-RA 58..1203 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:37 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
X 17813529..17813925 766..1164 99   Plus
X 17791067..17791448 17..398 100 -> Plus
X 17811681..17811907 399..625 100 -> Plus
X 17813310..17813449 626..765 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:17 Download gff for BO05070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17685100..17685481 17..398 100 -> Plus
arm_X 17705714..17705940 399..625 100 -> Plus
arm_X 17707343..17707482 626..765 100 -> Plus
arm_X 17707562..17707958 766..1164 99   Plus

BO05070.pep Sequence

Translation from 16 to 1180

> BO05070.pep
MDQLIQQLQQAAAARGQVQHPHGSSALQLYAAAAAVNMQVSGWSSVLNLS
MDAPNPEISPNSVTNSSSVYMIRQMALIQQARVAAAAVAMQQQQQQQRDL
NRELGMDPHSEQRIKLDSVSPTHNIHAGSSRGIKQDPLSDEGADSNLGQN
DCTESSKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEG
RIAVWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRAREL
AQRSKRMKKAIDRQAKKLQDKGLEVDYARLEAEYLAAHQENGVDENNWLD
DDGYDDLHIDVVGVEPEYVTGDSLDHSFCSSRTYQTKSTSSELDSNDMGL
QGRVETPPPPQPPMQNKTLYNSPFSIESLLGSASFLDH

BO05070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
OdsH-PA 382 CG6352-PA 1..382 1..382 1986 100 Plus
unc-4-PC 588 CG6269-PC 92..405 22..323 599 44.2 Plus
unc-4-PB 588 CG6269-PB 92..405 22..323 599 44.2 Plus
Rx-PB 904 CG10052-PB 432..621 52..220 259 34.6 Plus
al-PA 408 CG3935-PA 56..156 127..231 238 48.6 Plus