Clone Sequence Records
BO05070.3prime Sequence
893 bp (729 high quality bases) assembled on 2005-09-08
> BO05070.3prime
ATGGTCTAGAAAGCTTGCCCCTCCCAACAGGGATTCGATGCTGAAGGGCG
AATTGTAGAGGGTCTTATTCTGCATCGGTGGCTGTGGTGGTGGCGGAGTT
TCCACTCTTCCCTGGAGTCCCATATCATTGGAATCCAGTTCGCTGCTGGT
GCTCTTCGTCTGGTACGTCCTGGAGGAGCAGAACGAGTGATCCAAACTGT
CGCCGGTCACGTACTCCGGTTCAACGCCCACCACATCGATGTGCAGATCA
TCGTAGCCATCATCATCCAGCCAGTTATTCTCATCCACTCCGTTCTCCTG
GTGGGCAGCTAGGTACTCGGCCTCCAGACGGGCATAGTCCACTTCCAATC
CCTTGTCCTGTAGCTTCTTCGCCTGCCGATCGATGGCTTTCTTCATCCGC
TTGCTGCGCTGGGCTAGTTCTCTGGCCCGAAGTTCGCTCAATGGAATGGG
GTCACCACTGCAGCTCTGGGGGTGGGCATTATGAGCTGGTCGTCCAGGAC
CCTTCTTGGTATGCTCCTGCTTACGCCATTTGGCACGACGATTCTGGAAC
CAAACCGCTATACGACCCTCCATTAGATCGAGTTTGGTGGCCAAGGCCTC
ACGCATGAAAATGTCAGGATAGTGACTTCCCTGGAAGACTCTCTCCAGCT
CCCTCAGCTGCCAGGAGTTGAAGTTGGTCCTGCCGCGTCGCTTCTTCGAG
GACTCTGTACAATCATTCTGCCCCAGATTGGAATCGGCCCCTTCATCGCT
TAGCGGATCTTGTTTGATCCCGCGACTAGAGCCCGCGTGGATGTTGTGCG
TGGGTGACACTGAGTCCAACTTAATACGCTGCTCACTGTGCGGATCCATG
CCAAGCTCCCGATTGAGATCCCTTTGCTGTTGCTGCTGCTGCT
BO05070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6352-PA | 1149 | OdsH-RA | 272..1143 | 893..22 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 329..1200 | 893..22 | 4360 | 100 | Minus |
unc-4-RC | 2995 | CG6269-RC | 1104..1339 | 678..443 | 400 | 78 | Minus |
unc-4-RB | 2866 | CG6269-RB | 1104..1339 | 678..443 | 400 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17813529..17813922 | 415..22 | 1970 | 100 | Minus |
X | 23542271 | X | 17811680..17811909 | 783..554 | 1150 | 100 | Minus |
X | 23542271 | X | 17813309..17813449 | 556..416 | 705 | 100 | Minus |
X | 23542271 | X | 17791338..17791449 | 893..782 | 560 | 100 | Minus |
X | 23542271 | X | 17776415..17776528 | 556..443 | 240 | 80.7 | Minus |
X | 23542271 | X | 17776153..17776243 | 678..588 | 230 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:19:08 has no hits.
BO05070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:41 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 272..1149 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:02 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 272..1149 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:05 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 329..1206 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:52:36 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 329..1206 | 15..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:52:36 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17811681..17811907 | 556..782 | 100 | -> | Minus |
X | 17813310..17813449 | 416..555 | 100 | -> | Minus |
X | 17791338..17791448 | 783..893 | 100 | -> | Minus |
X | 17813529..17813928 | 15..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:05 Download gff for
BO05070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685371..17685481 | 783..893 | 100 | -> | Minus |
arm_X | 17705714..17705940 | 556..782 | 100 | -> | Minus |
arm_X | 17707343..17707482 | 416..555 | 100 | -> | Minus |
arm_X | 17707562..17707961 | 15..415 | 99 | | Minus |
BO05070.5prime Sequence
862 bp (756 high quality bases) assembled on 2005-12-02
> BO05070.5prime
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCC
BO05070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6352-PA | 1149 | OdsH-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 58..903 | 17..862 | 4230 | 100 | Plus |
unc-4-RC | 2995 | CG6269-RC | 1104..1339 | 503..738 | 400 | 78 | Plus |
unc-4-RB | 2866 | CG6269-RB | 1104..1339 | 503..738 | 400 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17791067..17791449 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 17811680..17811909 | 398..627 | 1150 | 100 | Plus |
X | 23542271 | X | 17813309..17813449 | 625..765 | 705 | 100 | Plus |
X | 23542271 | X | 17813529..17813625 | 766..862 | 485 | 100 | Plus |
X | 23542271 | X | 17776415..17776528 | 625..738 | 240 | 80.7 | Plus |
X | 23542271 | X | 17776153..17776243 | 503..593 | 230 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:38:56 has no hits.
BO05070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:41 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:03 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6352-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:12 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 50..903 | 10..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:58 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 50..903 | 10..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:58 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17791059..17791448 | 10..398 | 99 | -> | Plus |
X | 17811681..17811907 | 399..625 | 100 | -> | Plus |
X | 17813310..17813449 | 626..765 | 100 | -> | Plus |
X | 17813529..17813625 | 766..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:12 Download gff for
BO05070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685092..17685481 | 10..398 | 99 | -> | Plus |
arm_X | 17705714..17705940 | 399..625 | 100 | -> | Plus |
arm_X | 17707343..17707482 | 626..765 | 100 | -> | Plus |
arm_X | 17707562..17707658 | 766..862 | 100 | | Plus |
BO05070.complete Sequence
1180 bp assembled on 2008-11-10
> BO05070.complete
GAAGTTATCAGTCGACATGGATCAGCTAATACAACAGCTGCAACAGGCAG
CTGCTGCTCGGGGACAAGTCCAACATCCCCATGGTTCATCCGCTTTGCAA
CTTTACGCGGCAGCAGCGGCTGTCAACATGCAAGTGAGCGGCTGGTCATC
CGTTCTCAACTTGTCCATGGATGCCCCAAATCCGGAAATTAGTCCCAATT
CCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCAAATGGCGCTGATA
CAGCAAGCCAGAGTGGCCGCCGCAGCAGTGGCAATGCAGCAGCAGCAGCA
ACAGCAAAGGGATCTCAATCGGGAGCTTGGCATGGATCCGCACAGTGAGC
AGCGTATTAAGTTGGACTCAGTGTCACCCACGCACAACATCCACGCGGGC
TCTAGTCGCGGGATCAAACAAGATCCGCTAAGCGATGAAGGGGCCGATTC
CAATCTGGGGCAGAATGATTGTACAGAGTCCTCGAAGAAGCGACGCGGCA
GGACCAACTTCAACTCCTGGCAGCTGAGGGAGCTGGAGAGAGTCTTCCAG
GGAAGTCACTATCCTGACATTTTCATGCGTGAGGCCTTGGCCACCAAACT
CGATCTAATGGAGGGTCGTATAGCGGTTTGGTTCCAGAATCGTCGTGCCA
AATGGCGTAAGCAGGAGCATACCAAGAAGGGTCCTGGACGACCAGCTCAT
AATGCCCACCCCCAGAGCTGCAGTGGTGACCCCATTCCATTGAGCGAACT
TCGGGCCAGAGAACTAGCCCAGCGCAGCAAGCGGATGAAGAAAGCCATCG
ATCGGCAGGCGAAGAAGCTACAGGACAAGGGATTGGAAGTGGACTATGCC
CGTCTGGAGGCCGAGTACCTAGCTGCCCACCAGGAGAACGGAGTGGATGA
GAATAACTGGCTGGATGATGATGGCTACGATGATCTGCACATCGATGTGG
TGGGCGTTGAACCGGAGTACGTGACCGGCGACAGTTTGGATCACTCGTTC
TGCTCCTCCAGGACGTACCAGACGAAGAGCACCAGCAGCGAACTGGATTC
CAATGATATGGGACTCCAGGGAAGAGTGGAAACTCCGCCACCACCACAGC
CACCGATGCAGAATAAGACCCTCTACAATTCGCCCTTCAGCATCGAATCC
CTGTTGGGATCGGCAAGCTTTCTAGACCAT
BO05070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1149 | CG6352-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
unc-4-RC | 1767 | CG6269-PC | 742..977 | 503..738 | 400 | 78 | Plus |
unc-4-RB | 1767 | CG6269-PB | 742..977 | 503..738 | 400 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-RA | 1289 | CG6352-RA | 58..1203 | 17..1162 | 5730 | 100 | Plus |
unc-4-RC | 2995 | CG6269-RC | 1104..1339 | 503..738 | 400 | 78 | Plus |
unc-4-RB | 2866 | CG6269-RB | 1104..1339 | 503..738 | 400 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17813529..17813925 | 766..1162 | 1985 | 100 | Plus |
X | 23542271 | X | 17791067..17791449 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 17811680..17811909 | 398..627 | 1150 | 100 | Plus |
X | 23542271 | X | 17813309..17813449 | 625..765 | 705 | 100 | Plus |
X | 23542271 | X | 17776415..17776528 | 625..738 | 240 | 80.7 | Plus |
X | 23542271 | X | 17776153..17776243 | 503..593 | 230 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:29:11 has no hits.
BO05070.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:53 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 10..1166 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:17 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 58..1203 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:26 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 18..1163 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:37 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
OdsH-RA | 58..1203 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:37 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17813529..17813925 | 766..1164 | 99 | | Plus |
X | 17791067..17791448 | 17..398 | 100 | -> | Plus |
X | 17811681..17811907 | 399..625 | 100 | -> | Plus |
X | 17813310..17813449 | 626..765 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:17 Download gff for
BO05070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17685100..17685481 | 17..398 | 100 | -> | Plus |
arm_X | 17705714..17705940 | 399..625 | 100 | -> | Plus |
arm_X | 17707343..17707482 | 626..765 | 100 | -> | Plus |
arm_X | 17707562..17707958 | 766..1164 | 99 | | Plus |
BO05070.pep Sequence
Translation from 16 to 1180
> BO05070.pep
MDQLIQQLQQAAAARGQVQHPHGSSALQLYAAAAAVNMQVSGWSSVLNLS
MDAPNPEISPNSVTNSSSVYMIRQMALIQQARVAAAAVAMQQQQQQQRDL
NRELGMDPHSEQRIKLDSVSPTHNIHAGSSRGIKQDPLSDEGADSNLGQN
DCTESSKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEG
RIAVWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRAREL
AQRSKRMKKAIDRQAKKLQDKGLEVDYARLEAEYLAAHQENGVDENNWLD
DDGYDDLHIDVVGVEPEYVTGDSLDHSFCSSRTYQTKSTSSELDSNDMGL
QGRVETPPPPQPPMQNKTLYNSPFSIESLLGSASFLDH
BO05070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
OdsH-PA | 382 | CG6352-PA | 1..382 | 1..382 | 1986 | 100 | Plus |
unc-4-PC | 588 | CG6269-PC | 92..405 | 22..323 | 599 | 44.2 | Plus |
unc-4-PB | 588 | CG6269-PB | 92..405 | 22..323 | 599 | 44.2 | Plus |
Rx-PB | 904 | CG10052-PB | 432..621 | 52..220 | 259 | 34.6 | Plus |
al-PA | 408 | CG3935-PA | 56..156 | 127..231 | 238 | 48.6 | Plus |