Clone BO05071 Report

Search the DGRC for BO05071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptH15-RA
Protein status:BO05071.pep: Imported from assembly
Sequenced Size:2014

Clone Sequence Records

BO05071.3prime Sequence

861 bp (802 high quality bases) assembled on 2005-12-02

> BO05071.3prime
ATGGTCTAGAAAGCTTGCTGGACTTTCTGCTCGATTGGAGGCTGGTGGCG
ATGCCTGATGCTGGGGCACCTGATACGGACTGAACCGCTGAGGATAATGA
TTCAGTTGGGGTCTGGCCCTCAGATCCGGAGAGGCGGAACCGCACGAGGA
GGTGGGCGTGGCAGGAGCTGGTGGCGCCACCGCCATCGAAGGTGGTGGCG
TTCGATTGGCGCCCGCTGCTGCCAAGGCCAAGGCCGCCTGCTGATTGGCG
CTGGCCAGGAATCCGGCGGTGAGTTGGGGCCACTGCTGCTGCCACATTCC
CAGCTGAAAGGCGCTGAGGTGGGGGGCCGGTGGGGGCGGCGGCGGTGCCG
CCGATCGCTGATACAGATGTGGCAGCAACATCTCCGTGTACGGCGATCGT
CCAAACATCTGCAAGTGCTGGCGGGCTTTCTCCAACAGCGCCATTGATGC
GGCATCTGCCTCCTGAGGAGTCAATTGGGACATCAGCGGATCGGGAAAGA
ATCGCAGGGGAGCAGTACGCATGTGCTGGTCGAAGAAGAACGCATCCATG
GGATCCCTATCAAAGTCACTGAGACGCGACGAATCGCGAAATCCCTTCGC
AAACGGATTCGAATCGATTTTCAGTTTCGTAATCAATTGATTCTGATAGG
CCGTCACGGCCGTGAATACGGTCTCCGGGAAAACGAAGGTTTTATGGTCC
ATATCCTGCAGCTCCTTGGGACTGCCGGGTATGCTCTGGCCATGGCTCAA
CCGGACCAAGTGGATCCTGGGCTGGTAGCGGTGCATTGAGTTCAGCACGA
CCTGTCCGCTCTTGTCCATCTCGTTGTTTTGTCACTTCACCTTTTCAAAG
GAAACGACCTG

BO05071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6604-PA 1983 H15-RA 1170..1980 829..19 4055 100 Minus
CG6634-PA 1743 mid-RA 1429..1481 291..239 165 92.4 Minus
CG6634-PA 1743 mid-RA 1045..1088 681..638 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RB 2926 CG6604-RB 1382..2224 861..19 4140 99.5 Minus
H15-RA 2617 CG6604-RA 1738..2580 861..19 4140 99.5 Minus
mid-RA 2920 CG6634-RA 1153..1767 852..232 790 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5415352..5415891 558..19 2700 100 Minus
2L 23513712 2L 5413962..5414210 804..556 1245 100 Minus
2L 23513712 2L 5465891..5466288 804..401 585 77.5 Minus
2L 23513712 2L 5413238..5413299 861..800 220 90.3 Minus
2L 23513712 2L 5466398..5466457 291..232 210 90 Minus
Blast to na_te.dros performed on 2015-02-11 02:34:35 has no hits.

BO05071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:42 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-PA 1138..1983 18..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:04 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6604-PA 1138..1983 18..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:01 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 1738..2580 19..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:57 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 1738..2580 19..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:57 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5413238..5413297 802..861 93 -> Minus
2L 5413965..5414209 557..801 100 -> Minus
2L 5415354..5415891 19..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:01 Download gff for BO05071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5413238..5413297 802..861 93 -> Minus
arm_2L 5413965..5414209 557..801 100 -> Minus
arm_2L 5415354..5415891 19..556 100   Minus

BO05071.5prime Sequence

841 bp (839 high quality bases) assembled on 2005-09-08

> BO05071.5prime
CAGTCGACATGCTTTCGAGCAATCAGCCGGCGAATACGAAACCGCAGCAA
ACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTGCAGCAGCA
GATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAACGGCAGCA
GCCATCATCATCATCATCAGAACCATCATCATCACCATCCGCTGAACAAC
CATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCCACGGATTT
CTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAGCAGCCGCG
AACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCTATTCAGGC
CAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGCAGTGACTC
GGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAACAACAGCAG
CGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTCAGGCATTG
CGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGGCAGCAGAC
ACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCACAATCATC
ACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCAACACCAAC
AGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTGGGAGCCGC
TGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCCGGAGGAAC
TCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCACGCCCAAG
ATAGTGGGCTCGTGCAACTGCGACGATCTCACGCCCGTCCA

BO05071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6604-PA 1983 H15-RA 1..833 9..841 4140 99.8 Plus
CG8408-PA 963 CG8408-RA 152..183 508..539 160 100 Plus
CG5580-PA 6843 sbb-RA 5776..5805 510..539 150 100 Plus
CG2904-PA 5139 ec-RA 4318..4346 510..538 145 100 Plus
CG2904-PA 5139 ec-RA 4351..4379 510..538 145 100 Plus
CG33541-PA 561 CG33541-RA 179..207 511..539 145 100 Plus
CG2534-PB 5649 cno-RB 3511..3539 510..538 145 100 Plus
CG2534-PA 6156 cno-RA 4018..4046 510..538 145 100 Plus
CG33106-PA 12006 mask-RA 3568..3596 510..538 145 100 Plus
CG33106-PB 12006 mask-RB 3568..3596 510..538 145 100 Plus
CG6884-PA 531 MED11-RA 400..426 513..539 135 100 Plus
CG6575-PA 687 glec-RA 591..617 513..539 135 100 Plus
CG12223-PB 1158 Dsp1-RB 390..416 509..535 135 100 Plus
CG12223-PA 1158 Dsp1-RA 390..416 509..535 135 100 Plus
CG12223-PC 1158 Dsp1-RC 390..416 509..535 135 100 Plus
CG12223-PD 1161 Dsp1-RD 393..419 509..535 135 100 Plus
CG12223-PE 1182 Dsp1-RE 414..440 509..535 135 100 Plus
CG6634-PA 1743 mid-RA 205..236 363..394 135 96.8 Plus
CG10555-PA 2781 CG10555-RA 91..117 513..539 135 100 Plus
CG17228-PD 4125 pros-RD 2169..2195 509..535 135 100 Plus
CG17228-PC 4212 pros-RC 2169..2195 509..535 135 100 Plus
CG17762-PD 4413 tomosyn-RD 2155..2181 513..539 135 100 Plus
CG17228-PA 4608 pros-RA 2169..2195 509..535 135 100 Plus
CG8118-PA 4785 mam-RA 228..254 509..535 135 100 Plus
CG8118-PB 4785 mam-RB 228..254 509..535 135 100 Plus
CG10107-PA 5502 CG10107-RA 262..288 513..539 135 100 Plus
CG10107-PC 5502 CG10107-RC 262..288 513..539 135 100 Plus
CG7467-PC 7671 osa-RC 999..1025 509..535 135 100 Plus
CG7467-PA 8112 osa-RA 999..1025 509..535 135 100 Plus
CG7467-PB 8151 osa-RB 999..1025 509..535 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 2617 CG6604-RA 601..1433 9..841 4150 99.9 Plus
H15-RB 2926 CG6604-RB 248..1077 9..841 4095 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5406911..5407374 322..785 2320 100 Plus
2L 23513712 2L 5404880..5405194 9..323 1560 99.7 Plus
2L 23513712 2L 5407681..5407739 783..841 295 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:39:25 has no hits.

BO05071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:43 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-PA 1..832 9..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:05 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6604-PA 1..832 9..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:14 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..1432 9..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:03 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..1432 9..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:03 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5406911..5407374 322..785 100 -> Plus
2L 5407684..5407738 786..840 100   Plus
2L 5404880..5405192 9..321 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:14 Download gff for BO05071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5404880..5405192 9..321 99 -> Plus
arm_2L 5406911..5407374 322..785 100 -> Plus
arm_2L 5407684..5407738 786..840 100   Plus

BO05071.complete Sequence

2014 bp assembled on 2008-11-10

> BO05071.complete
GAAGTTATCAGTCGACATGCTTTTGAGCAATCAGCCGGCGAATACGAAAC
CGCAGCAAACGCCTTCGCCGTCGCAGACGCAGAACTTCAAGTCGAAGCTG
CAGCAGCAGATTGTTTCGGCAGCGGCGGCGGCAGCGGCGAACATAGCCAA
CGGCAGCAGCCATCATCATCATCATCAGAACCATCATCATCACCATCCGC
TGAACAACCATCATAATCACAATCACAATCAGCACAACATTTCCTTCGCC
ACGGATTTCTCAATTGCGGCGATTATGGCGCGCGGCGGAAACGCCCCAAG
CAGCCGCGAACCTTCGGAACGCAGTCTGAGTCCCGCATCTGTGGAGCGCT
ATTCAGGCCAGGATGCGGACGATGATGTTGACGTTGATGTGGTCGACTGC
AGTGACTCGGAAATGCCGTCGGCAACTGCGGCAGCAGCAGCGGCGGCAAC
AACAGCAGCGGCTGCAGCGGCAGCATTGCAGGCGCAGCAACAAGCGCGTC
AGGCATTGCGTGTTGCACAGCAACAACAGCAGCAGCAGCAACAACAAAGG
CAGCAGACACATCACCACGCAACAACTGGCAAGCAACAACGCCAACATCA
CAATCATCACAGCAGCAACACCAACAACAGCAGCAACTCAGGCAACAGCA
ACACCAACAGCAAATCAAGCAGCCAGCGAGGGCGTTCTGCTGCCGCAGTG
GGAGCCGCTGCCACGCCCTCGCCACCGCCGCCCCCGCCCTCGCAAAGTCC
GGAGGAACTCGAACGCCTGTCGCCAGAGGAATCACCAGCCCAGCAGCCCA
CGCCCAAGATAGTGGGCTCGTGCAACTGCGACGATCTCACGCCCGTCCAG
TGCCACCTGGAGACCAAGGAGCTGTGGGATAAGTTCCATGAATTGGGCAC
TGAAATGATCATTACCAAATCGGGCAGACGCATGTTTCCCACCGTTCGAG
TGAGTTTCTCGGGTCCTTTGCGGCAAATTCAGCCAGCTGACCGATATGCC
GTACTTTTGGATGTGGTACCACTTGATTCGCGGCGATACCGTTACGCCTA
CCATCGCAGTTCGTGGCTGGTAGCCGGAAAGGCGGATCCGCCGCCACCCT
CCCGCATTTACGCCCATCCGGATTGTCCTCTGAGTCCGGAGGCACTGCGA
AAACAGGTCGTCTCCTTCGAAAAGGTGAAGTTGACAAACAACGAGATGGA
CAAGAGCGGACAGGTCGTGCTGAACTCAATGCACCGCTACCAGCCCAGGA
TCCACTTGGTCCGGTTGAGCCATGGCCAGAGCATACCCGGCAGTCCCAAG
GAGCTGCAGGATATGGACCATAAAACCTTCGTTTTCCCGGAGACCGTATT
CACGGCCGTGACGGCCTATCAGAATCAATTGATTACGAAACTGAAAATCG
ATTCGAATCCGTTTGCGAAGGGATTTCGCGATTCGTCGCGTCTCAGTGAC
TTTGATAGGGATCCCATGGATGCGTTCTTCTTCGACCAGCACATGCGTAC
TGCTCCCCTGCGATTCTTTCCCGATCCGCTGATGTCCCAATTGACTCCTC
AGGAGGCAGATGCCGCATCAATGGCGCTGTTGGAGAAAGCCCGCCAGCAC
TTGCAGATGTTTGGACGATCGCCGTACACGGAGATGTTGCTGCCACATCT
GTATCAGCGATCGGCGGCACCGCCGCCGCCCCCACCGGCCCCCCACCTCA
GCGCCTTTCAGCTGGGAATGTGGCAGCAGCAGTGGCCCCAACTCACCGCC
GGATTCCTGGCCAGCGCCAATCAGCAGGCGGCCTTGGCCTTGGCAGCAGC
GGGCGCCAATCGAACGCCACCACCTTCGATGGCGGTGGCGCCACCAGCTC
CTGCCACGCCCACCTCCTCGTGCGGTTCCGCCTCTCCGGATCTGAGGGCC
AGACCCCAACTGAATCATTATCCTCAGCGGTTCAGTCCGTATCAGGTGCC
CCAGCATCAGGCATCGCCACCAGCCTCCAATCGAGCAGAAAGTCCAGCAA
GCTTTCTAGACCAT

BO05071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 1983 CG6604-PA 1..1980 17..1996 9900 100 Plus
H15-RB 1980 CG6604-PB 1..1977 17..1996 9820 99.8 Plus
mid-RA 1743 CG6634-PA 514..1319 803..1614 1200 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
H15-RA 2617 CG6604-RA 601..2580 17..1996 9900 100 Plus
H15-RB 2926 CG6604-RB 248..2224 17..1996 9820 99.8 Plus
mid-RA 2920 CG6634-RA 793..1598 803..1614 1200 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5415352..5415891 1457..1996 2700 100 Plus
2L 23513712 2L 5406911..5407374 330..793 2320 100 Plus
2L 23513712 2L 5404880..5405194 17..331 1575 100 Plus
2L 23513712 2L 5413009..5413299 925..1215 1455 100 Plus
2L 23513712 2L 5413962..5414210 1211..1459 1245 100 Plus
2L 23513712 2L 5407681..5407817 791..927 685 100 Plus
2L 23513712 2L 5465891..5466288 1211..1614 585 77.5 Plus
2L 23513712 2L 5465217..5465507 925..1215 375 75.3 Plus
2L 23513712 2L 5464145..5464269 803..927 280 81.6 Plus
X 23542271 X 8451685..8451770 942..857 250 86 Minus
2L 23513712 2L 5466398..5466457 1724..1783 210 90 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:08 has no hits.

BO05071.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:37 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 539..2518 17..1996 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:42 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..2580 17..1998 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:50 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 539..2518 17..1998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:23 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
H15-RA 601..2580 17..1998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:23 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5413012..5413297 928..1213 100 -> Plus
2L 5413965..5414209 1214..1458 100 -> Plus
2L 5404880..5405192 17..329 100 -> Plus
2L 5406911..5407374 330..793 100 -> Plus
2L 5407684..5407817 794..927 100 -> Plus
2L 5415354..5415891 1459..1998 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:42 Download gff for BO05071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5413965..5414209 1214..1458 100 -> Plus
arm_2L 5404880..5405192 17..329 100 -> Plus
arm_2L 5406911..5407374 330..793 100 -> Plus
arm_2L 5407684..5407817 794..927 100 -> Plus
arm_2L 5413012..5413297 928..1213 100 -> Plus
arm_2L 5415354..5415891 1459..1998 99   Plus

BO05071.pep Sequence

Translation from 16 to 2014

> BO05071.pep
MLLSNQPANTKPQQTPSPSQTQNFKSKLQQQIVSAAAAAAANIANGSSHH
HHHQNHHHHHPLNNHHNHNHNQHNISFATDFSIAAIMARGGNAPSSREPS
ERSLSPASVERYSGQDADDDVDVDVVDCSDSEMPSATAAAAAAATTAAAA
AAALQAQQQARQALRVAQQQQQQQQQQRQQTHHHATTGKQQRQHHNHHSS
NTNNSSNSGNSNTNSKSSSQRGRSAAAVGAAATPSPPPPPPSQSPEELER
LSPEESPAQQPTPKIVGSCNCDDLTPVQCHLETKELWDKFHELGTEMIIT
KSGRRMFPTVRVSFSGPLRQIQPADRYAVLLDVVPLDSRRYRYAYHRSSW
LVAGKADPPPPSRIYAHPDCPLSPEALRKQVVSFEKVKLTNNEMDKSGQV
VLNSMHRYQPRIHLVRLSHGQSIPGSPKELQDMDHKTFVFPETVFTAVTA
YQNQLITKLKIDSNPFAKGFRDSSRLSDFDRDPMDAFFFDQHMRTAPLRF
FPDPLMSQLTPQEADAASMALLEKARQHLQMFGRSPYTEMLLPHLYQRSA
APPPPPPAPHLSAFQLGMWQQQWPQLTAGFLASANQQAALALAAAGANRT
PPPSMAVAPPAPATPTSSCGSASPDLRARPQLNHYPQRFSPYQVPQHQAS
PPASNRAESPASFLDH

BO05071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
H15-PA 660 CG6604-PA 1..660 1..660 3483 100 Plus
H15-PB 659 CG6604-PB 1..659 1..660 3466 99.8 Plus
mid-PA 580 CG6634-PA 38..579 78..661 1711 60.6 Plus
mid-PB 580 CG6634-PB 38..579 78..661 1711 60.6 Plus
org-1-PB 699 CG11202-PB 81..507 180..649 595 34.3 Plus