Clone Sequence Records
BO05072.3prime Sequence
917 bp (864 high quality bases) assembled on 2005-12-02
> BO05072.3prime
ATGGTCTAGAAAGCTTGCAATGATGTTTGGCGGACTGGCCGCGCTGGCCA
CTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGAG
ATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTAT
CAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCCT
GGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTGG
GCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTGG
CGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACAT
GATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTGG
TGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACTG
GGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCGG
AGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACCG
CCGCCACCACCACCACCTGGCACTGGTGACTTGTTGAGCGTCTTGGGCTT
GCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCCC
GCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAGT
AATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTTT
TGGATTGTCCTGNGCCATTTTGCGACGCTGCCCCCGCGACCAGACCATGA
AAGCGTTCATTGGTCGCTTAATGTGGTCGTGGCTGTTGTGATGGCTTCCA
GTATTCGAATTCGAGTGGCTGGTCGGGGCATTATGGTGGGAGTTGCATGG
TGGTGCGTGTGCTGGTG
BO05072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 287..1164 | 896..19 | 4346 | 99.7 | Minus |
CG32139-PA | 1716 | Sox21b-RA | 751..777 | 813..787 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 660..1559 | 917..19 | 4449 | 99.7 | Minus |
Sox21a-RA | 2335 | CG7345-RA | 660..1559 | 917..19 | 4449 | 99.7 | Minus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 825..596 | 524 | 82.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14104257..14104888 | 19..650 | 3145 | 99.8 | Plus |
3L | 28110227 | 3L | 14106541..14106810 | 649..917 | 1289 | 99.3 | Plus |
3L | 28110227 | 3L | 14176684..14176918 | 591..825 | 474 | 80 | Plus |
2L | 23513712 | 2L | 8827031..8827270 | 819..580 | 364 | 76.7 | Minus |
3L | 28110227 | 3L | 14125085..14125194 | 716..825 | 254 | 81.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:44:28 has no hits.
BO05072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:44 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 265..1167 | 16..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:07 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 265..1167 | 16..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:40 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 660..1559 | 19..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:18 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 660..1559 | 19..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:18 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104257..14104887 | 19..649 | 99 | <- | Plus |
3L | 14106542..14106810 | 650..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:40 Download gff for
BO05072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097357..14097987 | 19..649 | 99 | <- | Plus |
arm_3L | 14099642..14099910 | 650..917 | 99 | | Plus |
BO05072.5prime Sequence
858 bp (850 high quality bases) assembled on 2005-12-02
> BO05072.5prime
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCT
BO05072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
CG32139-PA | 1716 | Sox21b-RA | 751..777 | 386..412 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 395..1237 | 16..858 | 4200 | 99.9 | Plus |
Sox21a-RA | 2335 | CG7345-RA | 395..1237 | 16..858 | 4200 | 99.9 | Plus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 374..603 | 520 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14106541..14107075 | 550..16 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14104579..14104888 | 858..549 | 1535 | 99.7 | Minus |
3L | 28110227 | 3L | 14176684..14176918 | 608..374 | 485 | 80.4 | Minus |
2L | 23513712 | 2L | 8827031..8827270 | 380..619 | 375 | 77.1 | Plus |
3L | 28110227 | 3L | 14125085..14125194 | 483..374 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:34:42 has no hits.
BO05072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:45 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:08 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:44 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 395..1237 | 16..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:00 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 395..1237 | 16..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:00 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104579..14104887 | 550..858 | 99 | <- | Minus |
3L | 14106542..14107075 | 16..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:44 Download gff for
BO05072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097679..14097987 | 550..858 | 99 | <- | Minus |
arm_3L | 14099642..14100175 | 16..549 | 100 | | Minus |
BO05072.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629971
> BO05072.complete
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGGCCGCCGCCACCTTGAGCGCCAAGTACGGTTTTGGTTCGCC
ACTGGAGTTATCGCTGCCCCGCCTGCCGAATGCCTTTCCCGGCCTCGCCC
ACTATCCACTGGATCCCACGTTGGCCCTGGACCTACAGGCGCGCCTCCAG
GCGATGTACGCCGGCTCCATCTACCACCCGTGGCGATATCTGCCGCTGAT
AAGTCCGGAAACTCCACCCTCCCCGCCCAGCAGCAGCGGTACCGGCATCT
CATCCTACGGATGCGTCAAGTCAGAGAAGTCCTCACCAAATGCGGTAGTG
GCCAGCGCGGCCAGTCCGCCAAACATCATTGCAAGCTTTCTAGACCAT
BO05072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 1224 | CG7345-PB | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
Sox21a-RA | 1167 | CG7345-PA | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
Sox21b-RC | 1764 | CG32139-PC | 739..968 | 374..603 | 520 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 395..1559 | 16..1180 | 5810 | 99.9 | Plus |
Sox21a-RA | 2335 | CG7345-RA | 395..1559 | 16..1180 | 5810 | 99.9 | Plus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 374..603 | 520 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14104257..14104888 | 1180..549 | 3145 | 99.8 | Minus |
3L | 28110227 | 3L | 14106541..14107075 | 550..16 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14176684..14176918 | 608..374 | 485 | 80.4 | Minus |
2L | 23513712 | 2L | 8827031..8827270 | 380..619 | 375 | 77.1 | Plus |
3L | 28110227 | 3L | 14125085..14125194 | 483..374 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:38 has no hits.
BO05072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:05 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:00 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:35 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 396..1559 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:06 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:54 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 396..1559 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:54 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104253..14104887 | 550..1182 | 99 | <- | Minus |
3L | 14106542..14107074 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:35 Download gff for
BO05072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097353..14097987 | 550..1182 | 99 | <- | Minus |
arm_3L | 14099642..14100174 | 17..549 | 100 | | Minus |
BO05072.pep Sequence
Translation from 16 to 1198
> BO05072.pep
MTSISALLHRSHSHSNGYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLG
MGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMHQHTHHHGNSHH
NAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSE
ISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLN
KSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLG
QSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSL
PRLPNAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETP
PSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPPNIIASFLDH
BO05072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-PA | 388 | CG7345-PA | 1..388 | 1..388 | 2121 | 100 | Plus |
Sox21a-PB | 407 | CG7345-PB | 1..388 | 1..388 | 2121 | 100 | Plus |
Sox21b-PB | 571 | CG32139-PB | 112..332 | 8..205 | 455 | 46.8 | Plus |
Sox21b-PA | 571 | CG32139-PA | 112..332 | 8..205 | 455 | 46.8 | Plus |
Sox21b-PC | 587 | CG32139-PC | 112..332 | 8..205 | 455 | 46.8 | Plus |