Clone BO05072 Report

Search the DGRC for BO05072

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSox21a-RA
Protein status:BO05072.pep: validated full length
Sequenced Size:1198

Clone Sequence Records

BO05072.3prime Sequence

917 bp (864 high quality bases) assembled on 2005-12-02

> BO05072.3prime
ATGGTCTAGAAAGCTTGCAATGATGTTTGGCGGACTGGCCGCGCTGGCCA
CTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGAG
ATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTAT
CAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCCT
GGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTGG
GCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTGG
CGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACAT
GATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTGG
TGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACTG
GGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCGG
AGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACCG
CCGCCACCACCACCACCTGGCACTGGTGACTTGTTGAGCGTCTTGGGCTT
GCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCCC
GCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAGT
AATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTTT
TGGATTGTCCTGNGCCATTTTGCGACGCTGCCCCCGCGACCAGACCATGA
AAGCGTTCATTGGTCGCTTAATGTGGTCGTGGCTGTTGTGATGGCTTCCA
GTATTCGAATTCGAGTGGCTGGTCGGGGCATTATGGTGGGAGTTGCATGG
TGGTGCGTGTGCTGGTG

BO05072.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 287..1164 896..19 4346 99.7 Minus
CG32139-PA 1716 Sox21b-RA 751..777 813..787 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 660..1559 917..19 4449 99.7 Minus
Sox21a-RA 2335 CG7345-RA 660..1559 917..19 4449 99.7 Minus
Sox21b-RC 3201 CG32139-RC 1605..1834 825..596 524 82.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14104257..14104888 19..650 3145 99.8 Plus
3L 28110227 3L 14106541..14106810 649..917 1289 99.3 Plus
3L 28110227 3L 14176684..14176918 591..825 474 80 Plus
2L 23513712 2L 8827031..8827270 819..580 364 76.7 Minus
3L 28110227 3L 14125085..14125194 716..825 254 81.8 Plus
Blast to na_te.dros performed on 2015-02-09 18:44:28 has no hits.

BO05072.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:44 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 265..1167 16..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:07 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 265..1167 16..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:40 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 660..1559 19..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:18 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 660..1559 19..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:18 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14104257..14104887 19..649 99 <- Plus
3L 14106542..14106810 650..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:40 Download gff for BO05072.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097357..14097987 19..649 99 <- Plus
arm_3L 14099642..14099910 650..917 99   Plus

BO05072.5prime Sequence

858 bp (850 high quality bases) assembled on 2005-12-02

> BO05072.5prime
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCT

BO05072.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 1..842 17..858 4185 99.8 Plus
CG32139-PA 1716 Sox21b-RA 751..777 386..412 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 395..1237 16..858 4200 99.9 Plus
Sox21a-RA 2335 CG7345-RA 395..1237 16..858 4200 99.9 Plus
Sox21b-RC 3201 CG32139-RC 1605..1834 374..603 520 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14106541..14107075 550..16 2675 100 Minus
3L 28110227 3L 14104579..14104888 858..549 1535 99.7 Minus
3L 28110227 3L 14176684..14176918 608..374 485 80.4 Minus
2L 23513712 2L 8827031..8827270 380..619 375 77.1 Plus
3L 28110227 3L 14125085..14125194 483..374 250 81.8 Minus
Blast to na_te.dros performed on 2015-02-04 19:34:42 has no hits.

BO05072.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:45 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:08 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:44 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 395..1237 16..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:00 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 395..1237 16..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:00 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14104579..14104887 550..858 99 <- Minus
3L 14106542..14107075 16..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:44 Download gff for BO05072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097679..14097987 550..858 99 <- Minus
arm_3L 14099642..14100175 16..549 100   Minus

BO05072.complete Sequence

1198 bp (1198 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629971

> BO05072.complete
GAAGTTATCAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCC
ACAGCCACAGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCAT
AGCAGCAGTCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCAT
GGTCGGTGGCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGG
GAAACACCACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCA
GCGGCCCCCACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCA
TGGCAACTCCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTG
GAAGCCATCACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTC
ATGGTCTGGTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAA
AATGCACAATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTAC
TCACCGAAGGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGG
GCTCTGCACATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAA
GCCCAAGACGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCG
GTGGAGGTGGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCC
GGTCCCAGTGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCA
GTTGTCGCCCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACC
AGTCACCATATCAATCGCATCCACACCACCCGCATCCTCATCCACATCAT
GTCCAGCTGGCCGCCGCCACCTTGAGCGCCAAGTACGGTTTTGGTTCGCC
ACTGGAGTTATCGCTGCCCCGCCTGCCGAATGCCTTTCCCGGCCTCGCCC
ACTATCCACTGGATCCCACGTTGGCCCTGGACCTACAGGCGCGCCTCCAG
GCGATGTACGCCGGCTCCATCTACCACCCGTGGCGATATCTGCCGCTGAT
AAGTCCGGAAACTCCACCCTCCCCGCCCAGCAGCAGCGGTACCGGCATCT
CATCCTACGGATGCGTCAAGTCAGAGAAGTCCTCACCAAATGCGGTAGTG
GCCAGCGCGGCCAGTCCGCCAAACATCATTGCAAGCTTTCTAGACCAT

BO05072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 1224 CG7345-PB 1..1164 17..1180 5805 99.9 Plus
Sox21a-RA 1167 CG7345-PA 1..1164 17..1180 5805 99.9 Plus
Sox21b-RC 1764 CG32139-PC 739..968 374..603 520 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 395..1559 16..1180 5810 99.9 Plus
Sox21a-RA 2335 CG7345-RA 395..1559 16..1180 5810 99.9 Plus
Sox21b-RC 3201 CG32139-RC 1605..1834 374..603 520 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14104257..14104888 1180..549 3145 99.8 Minus
3L 28110227 3L 14106541..14107075 550..16 2675 100 Minus
3L 28110227 3L 14176684..14176918 608..374 485 80.4 Minus
2L 23513712 2L 8827031..8827270 380..619 375 77.1 Plus
3L 28110227 3L 14125085..14125194 483..374 250 81.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:38 has no hits.

BO05072.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:05 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:00 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:35 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 396..1559 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:06 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 1..1167 17..1183 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:54 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 396..1559 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:54 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14104253..14104887 550..1182 99 <- Minus
3L 14106542..14107074 17..549 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:35 Download gff for BO05072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097353..14097987 550..1182 99 <- Minus
arm_3L 14099642..14100174 17..549 100   Minus

BO05072.pep Sequence

Translation from 16 to 1198

> BO05072.pep
MTSISALLHRSHSHSNGYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLG
MGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMHQHTHHHGNSHH
NAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSE
ISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLN
KSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLG
QSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSL
PRLPNAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETP
PSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPPNIIASFLDH

BO05072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-PA 388 CG7345-PA 1..388 1..388 2121 100 Plus
Sox21a-PB 407 CG7345-PB 1..388 1..388 2121 100 Plus
Sox21b-PB 571 CG32139-PB 112..332 8..205 455 46.8 Plus
Sox21b-PA 571 CG32139-PA 112..332 8..205 455 46.8 Plus
Sox21b-PC 587 CG32139-PC 112..332 8..205 455 46.8 Plus