Clone BO05075 Report

Search the DGRC for BO05075

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptHLHmdelta-RA
Protein status:BO05075.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO05075.5prime Sequence

551 bp (550 high quality bases) assembled on 2005-12-02

> BO05075.5prime
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGGCAAGCTTTCTAGAC
C

BO05075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8328-PA 522 HLHmdelta-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..630 17..535 2595 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 41..213 235 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998250 17..535 2595 100 Plus
3R 32079331 3R 26022032..26022204 41..213 235 75.7 Plus
Blast to na_te.dros performed on 2015-02-13 15:29:22 has no hits.

BO05075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:48 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:13 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:40 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..635 9..540 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:17 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..635 9..540 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:17 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25997728..25998249 9..534 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:40 Download gff for BO05075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823450..21823971 9..534 99 -> Plus

BO05075.3prime Sequence

551 bp (550 high quality bases) assembled on 2005-12-02

> BO05075.3prime
ATGGTCTAGAAAGCTTGCCCAGGGGCGCCAGACTTCTTCGCCATGATGAA
TATCCTCTTCTCGCGGAGACTTTGAACGTTTTTGGTCGGCTAGATTAACT
GGTTCTTCGGCCATATCGATGATTTCTTCTTCCTGTTTCATGTCCTTGAG
CTGGTGACCCAATTGCTTCATCAGGTGGGTGCCGAATTTGAGATCCAAGC
CGGGAACCGTAGAGAATATGTGCGAGACCTCGTAGGCAGCCTGGGTGTAT
CCGGCCCGAAATTTGTCCAGGTTAACTTGGTCGGGTGGTGGGGATTGAGG
ATTGGCCACTCGCTGCTGCTGTTGCGCTTTCAGATAGTTGACGGTGAGCT
CTAAGATGTCAGCTTTCTCCAGCTTGCTGACCTGTTCGCCCTGCGCATCC
ATGGTGTCCACGATGAGATCCTTGAGTTCGTCCAGATACAGGTTCATCCG
GGCGCGTCTTTTGCGCTCCAGGAGGGGTTTGGTCACCTTGCGGTAATGCT
GAGTCTTGGTCATAAATCTCTGACCCTGAACGGCCATGTCGACTGATAAC
T

BO05075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8328-PA 522 HLHmdelta-RA 1..519 537..19 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..630 537..19 2595 100 Minus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 513..341 235 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998250 537..19 2595 100 Minus
3R 32079331 3R 26022032..26022204 513..341 235 75.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:15:47 has no hits.

BO05075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:47 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:11 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8328-PA 1..522 16..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:11 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..635 14..545 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:34 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 108..635 14..545 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:34 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25997728..25998249 20..545 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:11 Download gff for BO05075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823450..21823971 20..545 99 -> Minus

BO05075.complete Sequence

553 bp (553 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629972

> BO05075.complete
GAAGTTATCAGTCGACATGGCCGTTCAGGGTCAGAGATTTATGACCAAGA
CTCAGCATTACCGCAAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGC
GCCCGGATGAACCTGTATCTGGACGAACTCAAGGATCTCATCGTGGACAC
CATGGATGCGCAGGGCGAACAGGTCAGCAAGCTGGAGAAAGCTGACATCT
TAGAGCTCACCGTCAACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCC
AATCCTCAATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGC
CGGATACACCCAGGCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTC
CCGGCTTGGATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCAC
CAGCTCAAGGACATGAAACAGGAAGAAGAAATCATCGATATGGCCGAAGA
ACCAGTTAATCTAGCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGG
ATATTCATCATGGCGAAGAAGTCTGGCGCCCCTGGGCAAGCTTTCTAGAC
CAT

BO05075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 522 CG8328-PA 1..519 17..535 2595 100 Plus
E(spl)m3-HLH-RA 675 CG8346-PA 13..185 41..213 235 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-RA 1013 CG8328-RA 112..630 17..535 2595 100 Plus
E(spl)m3-HLH-RA 1305 CG8346-RA 210..382 41..213 235 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25997732..25998250 17..535 2595 100 Plus
3R 32079331 3R 26022032..26022204 41..213 235 75.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:25:00 has no hits.

BO05075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:58 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:50 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 108..635 9..540 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:28 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 112..630 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:58 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmdelta-RA 108..635 9..540 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:03 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mdelta-HLH-RA 112..630 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:03 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25997732..25998250 17..537 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:28 Download gff for BO05075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21823454..21823972 17..537 99   Plus

BO05075.pep Sequence

Translation from 16 to 553

> BO05075.pep
MAVQGQRFMTKTQHYRKVTKPLLERKRRARMNLYLDELKDLIVDTMDAQG
EQVSKLEKADILELTVNYLKAQQQQRVANPQSPPPDQVNLDKFRAGYTQA
AYEVSHIFSTVPGLDLKFGTHLMKQLGHQLKDMKQEEEIIDMAEEPVNLA
DQKRSKSPREEDIHHGEEVWRPWASFLDH

BO05075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mdelta-HLH-PA 173 CG8328-PA 1..173 1..173 900 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 9..205 9..173 324 39.6 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 7..195 9..173 308 40 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 7..147 9..157 280 43.6 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 5..140 9..136 252 42.3 Plus