Clone BO05077 Report

Search the DGRC for BO05077

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:77
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO05077.pep: Imported from assembly
Sequenced Size:2689

Clone Sequence Records

BO05077.3prime Sequence

823 bp (763 high quality bases) assembled on 2005-12-02

> BO05077.3prime
ATGGTCTAGAAAGCTTGCATTTTTGGGATCTCTATCCTCAACCGGTTCGC
CGGCATCCCCATGGCCCGTGGCCGTTGGTATCGGTATCGAAATGGGTATC
GGTGGCACTACCACCACCCCCTGACTTTCCCCCTCCAGGGAGTGCTCCCC
ACGTCCATGATGAAGTGCTAAGTGCTGGTGCTGCTGGTGGAGATGCGGCT
GTTGTCCAAGTAGAAGCTGCTCGTGCTGCTGCTGCTGCTGGAGGGGATTT
TGGTGGTTTTGACTCTGGCTTAAGTGCTGCGAAAGATGCTGATGATGGTC
ACCAGTTGGTGGCCACTGCTGGTACGTGACTGGTACCAAAGGATCTGACA
TCCATTCAAAACTGAAAGCAGGTCCTATGGTCTGGGTGGTGCCCAAGCCA
CTTTGATGCGGTGTAGCACTTGTGGGCGTGGGGGGCGTGGTCGTGATGCA
CGGACTCAGCTCGTGGGAGGATCCAAAACTATCCAACGAAGCCTTTTGCG
CCGATTCCGACCAGGGTGGACTGGGATTCCATTGCTCTATAAAATCCGCA
GGATCCGGAGGCAGTGATTTATTCGGTAACCTCGGTCTCGTCGGCACTAT
TGTGGCATATATAACTGAAGCATCACTACTGACCACCGATGAGGTGGCAT
AGGCAGCAGCCGGATGAGTATGGATGGCATAGCAATCCGGTTCCGGAGTT
ATCGCCGCCGCCGGAGAGCGTTCGGCGTGTAAGTAGAGTGGTTCCAGTTT
TCGAGCCCGCTTCTTGGGCGGTGGGGGCGTGGACGATTTGGAGATAGGCG
GATTGGGAGTACTTGTTGCATTC

BO05077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32474-PA 2646 dys-RA 1851..2445 823..229 2875 99.3 Minus
CG32474-PA 2646 dys-RA 2434..2641 237..30 1015 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
dys-RD 3959 CG32474-RD 2525..3326 823..19 3900 99.1 Minus
dys-RB 3353 CG32474-RB 1919..2720 823..19 3900 99.1 Minus
dys-RC 4195 CG32474-RC 2525..3315 823..30 3845 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26077472..26078262 30..823 3815 99 Plus
Blast to na_te.dros performed on 2015-02-12 14:16:01 has no hits.

BO05077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:49 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
dys-PA 1851..2646 25..823 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:14 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32474-PA 1851..2646 25..823 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:28 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1919..2720 19..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:27 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
dys-RB 1919..2720 19..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:27 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26077472..26078262 30..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:28 Download gff for BO05077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21903194..21903984 30..823 99   Plus

BO05077.5prime Sequence

830 bp (829 high quality bases) assembled on 2005-12-02

> BO05077.5prime
GAAGTTATCAGTCGACATGTATGCGGATAATAAACGTGGCCTAGACAAGG
TGACGGCAGCAACCCCGCCCACCCACGCCCTCCAGCAGCAGCAGCAGCAA
CAACATCCCCACCAGCAGCAGCAGCATCTGCAGCATGTCCTGCAACTGCA
GCAGCAACAGCAGCAACACCTTCAGCAGCAGCAGCATCACTTGCAGCACC
AGATGCATACGCATCATAACTTCCAGCAGCATGAAACGTCGGCAACAGTG
TCGCAGCAGCAGCACATGCAACAGCAGCAGCCGCAGACGACACAACAGCA
ACATGCAACACAGCAACAGCAGCAGCAACAGCAACATACAGCCGGCATGT
TTACAAGATTCGATGCAAACAAATCGACGAAGGGCGCCTCGAAGATGCGA
CGCGATCTCATAAATGCGGAGATAGCCAATCTGAGGGATCTCCTGCCGCT
GCCCCAATCGACGCGCCAGCGCCTCTCGCAACTGCAACTGATGGCCCTCG
TTTGTGTCTATGTGCGGAAAGCCAACTACTTCCAGCAAGTTTTTAAACGT
CACAATGCGATGCATCATCTCCATCATCAGACAGCAACACCAAATATTGG
CTTCTCAAAGGCACTCTCCGGCTTCTTGATGATGCTCACACAAAATGGCA
AATTGCTTTATATATCGGATAATGCAGCGGAGTACTTGGGCCATTCCATG
GAGGATCTGCTGATACACGGTGACTCCGTTTACGATATCATTGACAAACA
GGATCACGCAAACATCCAGGCCGAGCTGAATAGGAACGTGCCACCGCAGC
CGGGTGGCTCGAGTCAGGCGAGCAGCGGTG

BO05077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32474-PA 2646 dys-RA 1..814 17..830 3920 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
dys-RD 3959 CG32474-RD 671..1488 13..830 3985 99.1 Plus
dys-RC 4195 CG32474-RC 671..1488 13..830 3985 99.1 Plus
dys-RB 3353 CG32474-RB 65..882 13..830 3985 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26096189..26096533 357..13 1650 98.6 Minus
3R 32079331 3R 26088166..26088349 539..356 920 100 Minus
3R 32079331 3R 26082062..26082192 830..700 655 100 Minus
3R 32079331 3R 26084071..26084163 701..609 450 98.9 Minus
3R 32079331 3R 26085109..26085182 611..538 355 98.6 Minus
Blast to na_te.dros performed on 2015-02-13 02:19:23 has no hits.

BO05077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:50 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
dys-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:16 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32474-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:07 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
dys-RB 60..882 7..830 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:44 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
dys-RB 60..882 7..830 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:44 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26096189..26096538 7..357 98   Minus
3R 26082062..26082191 701..830 100 <- Minus
3R 26084072..26084161 611..700 98 <- Minus
3R 26085110..26085180 540..610 98 <- Minus
3R 26088166..26088347 358..539 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:07 Download gff for BO05077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21907784..21907913 701..830 100 <- Minus
arm_3R 21909794..21909883 611..700 98 <- Minus
arm_3R 21910832..21910902 540..610 98 <- Minus
arm_3R 21913888..21914069 358..539 100 <- Minus
arm_3R 21921911..21922260 7..357 98   Minus

BO05077.complete Sequence

2689 bp assembled on 2008-08-14

> BO05077.complete
GAAGTTATCAGTCGACATGTATGCGGATAATAAACGTGGCCTAGACAAGG
TGACGGCAGCAACCCCGCCCACCCACGCCCTCCAGCAGCAGCAGCAGCAA
CAACATCCCCACCAGCAGCAGCAGCATCTGCAGCATGTCCTGCAACTGCA
GCAGCAACAGCAGCAACACCTTCAGCAGCAGCAGCATCACTTGCAGCACC
AGATGCATACGCATCATAACTTCCAGCAGCATGAAACGTCGGCAACAGTG
TCGCAGCAGCAGCACATGCAACAGCAGCAGCCGCAGACGACACAACAGCA
ACATGCAACACAGCAACAGCAGCAGCAACAGCAACATACAGCCGGCATGT
TTACAAGATTCGATGCAAACAAATCGACGAAGGGCGCCTCGAAGATGCGA
CGCGATCTCATAAATGCGGAGATAGCCAATCTGAGGGATCTCCTGCCGCT
GCCCCAATCGACGCGCCAGCGCCTCTCGCAACTGCAACTGATGGCCCTCG
TTTGTGTCTATGTGCGGAAAGCCAACTACTTCCAGCAAGTTTTTAAACGT
CACAATGCGATGCATCATCTCCATCATCAGACAGCAACACCAAATATTGG
CTTCTCAAAGGCACTCTCCGGCTTCTTGATGATGCTCACACAAAATGGCA
AATTGCTTTATATATCGGATAATGCAGCGGAGTACTTGGGCCATTCCATG
GAGGATCTGCTGATACACGGTGACTCCGTTTACGATATCATTGACAAACA
GGATCACGCAAACATCCAGGCCGAGCTGAATAGGAACGTGCCACCGCAGC
CGGGTGGCTCGAGTCAGGCGAGCAGCGGTGGTGCCGGTGGTGCTGGCGGT
GCCGGCGACTCAACGTCCAGCAATGGAAGTGCCGCTGGTGCCGGTGGTGC
TGGTGGCGCCTCCAGTCTCGAGGGCGAGCATCGCATGTTCCTCTGTCGCA
TGAATGTTAGCCGCAATGCGCGACGGCAAATGCGTTTCGGCGATCAGAAG
GTTGTCTTGGTCCAGGGTCACTATTTGTCATTCCTGCCGCTTTGCAGTCG
CAACGAGCCCGTCTTTTTGGCCACCTGCACTCCGATTGCCATGCCCGAAA
CCAGGGAGTGTGTTGTACAAGGTGCCACCAACGTCTTCACCACCATCCAT
TCAATGGACATGAAAATAGCCCATATCGATAAAAATGGCGAATTTCATTT
GGGCTATGATAAGTCGACTCTGCAAGGCACATCCTGGTACAACCTGATCC
ACAGCGATAATCTGACGGAGGCGCAAAAAAAACACAGTTTAATTATCCAA
TCGGAACAAGATCGCAGTTGTATCCTTCTAGTACGAATGCAGAGATCTAG
TGGGGAATACACGTGGGTACACGTGGTTTTACAAGTGCGAGATAGTCCCG
ACTCCACGCAACAACCTGTTATCGTGTGCACAAACCAAGTACTCAACGAT
CGAGAGGCCTCAATTATGCTGGCCAACTCCTGGCTGTATCACTACTATAC
CGTCCAGTCGAAGATCCAGTTCGGCATGCCGCTGGACAGTGGTATCCGTG
TCCCACCGGGAACTCCCTCCAGCGGCTACTACAGTCCCCATTCATCCCAT
CCACCGGCCACTCCAGGTGGTGCAACACCCAATTTGGGCATAGCCAGTAG
CTTTGGCCCGCACCATCATCCACACCACTCGCACCACCCGCACCACCATC
ATCATCATCACCATCCGGCGACTGCTTACCATCACCATCCGCATATGGGA
ACCTATGGTGGAGTCTATCATGCGAAGGCAGCAATCGAGCTTAAGGAGGA
TCAACCGCTGTTTTGCTTTCAAGAGCCCGTGGACTATAGCCAAGTAAATA
GCCACGTTAATCCTCCGAATGCAACAAGTACTCCCAATCCGCCTATCTCC
AAATCGTCCACGCCCCCACCGCCCAAGAAGCGGGCTCGAAAACTGGAACC
ACTCTACTTACACGCCGAACGCTCTCCGGCGGCGGCGATAACTCCGGAAC
CGGATTGCTATGCCATCCATACTCATCCGGCTGCTGCCTATGCCACCTCA
TCGGTGGTCAGTAGTGATGCTTCAGTTATATATGCCACAATAGTGCCGAC
GAGACCGAGGTTACCGAATAAATCACTGCCTCCGGATCCTGCGGATTTTA
TAGAGCAATGGAATCCCAGTCCACCCTGGTCGGAATCGGCGCAAAAGGCT
TCGTTGGATAGTTTTGGATCCTCCCACGAGCTGAGTCCGTGCATCACGAC
CACGCCCCCCACGCCCACAAGTGCTACACCGCATCAAAGTGGCTTGGGCA
CCACCCAGACCATAGGACCTGCTTTCAGTTTTGAATGGATGTCAGATCCT
TTGGTACCAGTCACGTACCAGCAGTGGCCACCAACTGGTGACCATCATCA
GCATCTTTCGCAGCACTTAAGCCAGAGTCAAAACCACCAAAATCCCCTCC
AGCAGCAGCAGCAGCACGAGCAGCTTCTACTTGGACAACAGCCGCATCTC
CACCAGCAGCACCAGCACTTAGCACTTCATCATGGACGTGGGGAGCACTC
CCTGGAGGGGGAAAGTCAGGGGGTGGTGGTAGTGCCACCGATACCCATTT
CGATACCGATACCAACGGCCACGGGCCATGGGGATGCCGGCGAACCGGTT
GAGGATAGAGATCCCAAAAATGCAAGCTTTCTAGACCAT

BO05077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
dys-RD 2763 CG32474-PD 105..2760 13..2671 13005 99.4 Plus
dys-RB 2655 CG32474-PB 1..2652 17..2671 13000 99.4 Plus
dys-RC 2754 CG32474-PC 105..2749 13..2660 12950 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
dys-RD 3959 CG32474-RD 671..3326 13..2671 13005 99.4 Plus
dys-RB 3353 CG32474-RB 65..2720 13..2671 13005 99.4 Plus
dys-RC 4195 CG32474-RC 671..3315 13..2660 12950 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26077472..26078682 2660..1447 5900 99.3 Minus
3R 32079331 3R 26096189..26096533 357..13 1650 98.6 Minus
3R 32079331 3R 26081890..26082192 1002..700 1515 100 Minus
3R 32079331 3R 26079552..26079738 1185..999 935 100 Minus
3R 32079331 3R 26088166..26088349 539..356 920 100 Minus
3R 32079331 3R 26078808..26078961 1446..1293 770 100 Minus
3R 32079331 3R 26079367..26079473 1292..1186 520 99.1 Minus
3R 32079331 3R 26084071..26084163 701..609 450 98.9 Minus
3R 32079331 3R 26085109..26085182 611..538 355 98.6 Minus
Blast to na_te.dros performed on 2014-11-28 00:17:33 has no hits.

BO05077.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:54 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 60..2720 7..2671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:45 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 69..2720 17..2673 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:25 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 69..2720 17..2673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:22 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
dys-RB 69..2720 17..2673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:22 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26085110..26085180 540..610 98 <- Minus
3R 26088166..26088347 358..539 100 <- Minus
3R 26077472..26078682 1447..2660 99 <- Minus
3R 26078808..26078961 1293..1446 100 <- Minus
3R 26079367..26079473 1186..1292 99 <- Minus
3R 26079552..26079736 1001..1185 100 <- Minus
3R 26081892..26082191 701..1000 100 <- Minus
3R 26084072..26084161 611..700 98 <- Minus
3R 26096189..26096529 17..357 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:45 Download gff for BO05077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21903194..21904404 1447..2660 99 <- Minus
arm_3R 21904530..21904683 1293..1446 100 <- Minus
arm_3R 21905089..21905195 1186..1292 99 <- Minus
arm_3R 21905274..21905458 1001..1185 100 <- Minus
arm_3R 21907614..21907913 701..1000 100 <- Minus
arm_3R 21909794..21909883 611..700 98 <- Minus
arm_3R 21910832..21910902 540..610 98 <- Minus
arm_3R 21913888..21914069 358..539 100 <- Minus
arm_3R 21921911..21922251 17..357 98   Minus

BO05077.pep Sequence

Translation from 16 to 2689

> BO05077.pep
MYADNKRGLDKVTAATPPTHALQQQQQQQHPHQQQQHLQHVLQLQQQQQQ
HLQQQQHHLQHQMHTHHNFQQHETSATVSQQQHMQQQQPQTTQQQHATQQ
QQQQQQHTAGMFTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTR
QRLSQLQLMALVCVYVRKANYFQQVFKRHNAMHHLHHQTATPNIGFSKAL
SGFLMMLTQNGKLLYISDNAAEYLGHSMEDLLIHGDSVYDIIDKQDHANI
QAELNRNVPPQPGGSSQASSGGAGGAGGAGDSTSSNGSAAGAGGAGGASS
LEGEHRMFLCRMNVSRNARRQMRFGDQKVVLVQGHYLSFLPLCSRNEPVF
LATCTPIAMPETRECVVQGATNVFTTIHSMDMKIAHIDKNGEFHLGYDKS
TLQGTSWYNLIHSDNLTEAQKKHSLIIQSEQDRSCILLVRMQRSSGEYTW
VHVVLQVRDSPDSTQQPVIVCTNQVLNDREASIMLANSWLYHYYTVQSKI
QFGMPLDSGIRVPPGTPSSGYYSPHSSHPPATPGGATPNLGIASSFGPHH
HPHHSHHPHHHHHHHHPATAYHHHPHMGTYGGVYHAKAAIELKEDQPLFC
FQEPVDYSQVNSHVNPPNATSTPNPPISKSSTPPPPKKRARKLEPLYLHA
ERSPAAAITPEPDCYAIHTHPAAAYATSSVVSSDASVIYATIVPTRPRLP
NKSLPPDPADFIEQWNPSPPWSESAQKASLDSFGSSHELSPCITTTPPTP
TSATPHQSGLGTTQTIGPAFSFEWMSDPLVPVTYQQWPPTGDHHQHLSQH
LSQSQNHQNPLQQQQQHEQLLLGQQPHLHQQHQHLALHHGRGEHSLEGES
QGVVVVPPIPISIPIPTATGHGDAGEPVEDRDPKNASFLDH

BO05077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
dys-PD 920 CG32474-PD 37..920 1..885 4748 99.5 Plus
dys-PB 884 CG32474-PB 1..884 1..885 4748 99.5 Plus
dys-PC 917 CG32474-PC 37..916 1..881 4724 99.5 Plus
trh-PC 966 CG42865-PC 38..563 55..527 311 22.7 Plus
trh-PG 923 CG42865-PG 65..520 93..527 304 24.3 Plus