Clone Sequence Records
BO05078.3prime Sequence
831 bp (830 high quality bases) assembled on 2005-12-02
> BO05078.3prime
ATGGTCTAGAAAGCTTGCGTCGTGTTGCGTGTAAATAGCAACATCCACAT
CCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCCA
TTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAGT
CTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACCT
GCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGGA
GTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACTT
CTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCCG
CCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCGC
TGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCAG
GGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGCT
GGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGCG
GGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCAA
GGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCTG
GTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATCC
TCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCCT
GACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTCA
AAAGCCGCAATCGTTTCATATTCAACGATCT
BO05078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 70..703 | 831..198 | 3170 | 100 | Minus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 449..362 | 315 | 94.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 236..1048 | 831..19 | 4065 | 100 | Minus |
lbl-RC | 1803 | CG6570-RC | 236..869 | 831..198 | 3170 | 100 | Minus |
lbl-RA | 1855 | CG6570-RA | 236..869 | 831..198 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433898 | 198..831 | 3170 | 100 | Plus |
3R | 32079331 | 3R | 21426925..21427104 | 19..198 | 900 | 100 | Plus |
3R | 32079331 | 3R | 21445093..21445425 | 206..535 | 550 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:42:47 has no hits.
BO05078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:51 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 70..703 | 198..831 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:17 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 70..703 | 198..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:37 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 236..1048 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:03 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 236..1048 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:03 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426925..21427103 | 19..197 | 100 | <- | Plus |
3R | 21433265..21433898 | 198..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:37 Download gff for
BO05078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252647..17252825 | 19..197 | 100 | <- | Plus |
arm_3R | 17258987..17259620 | 198..831 | 100 | | Plus |
BO05078.5prime Sequence
920 bp (789 high quality bases) assembled on 2005-12-02
> BO05078.5prime
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAACAAGCACAAG
TTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACGCA
AGCTTTCTAGACCATTCCTT
BO05078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 1..703 | 17..719 | 3515 | 100 | Plus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 468..555 | 315 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..1048 | 17..897 | 4385 | 99.9 | Plus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 719..17 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 21426925..21427104 | 897..719 | 850 | 99.4 | Minus |
3R | 32079331 | 3R | 21445093..21445425 | 711..382 | 550 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:50:35 has no hits.
BO05078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:52 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:18 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:23 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..1048 | 14..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:25:13 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 164..1048 | 14..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:25:13 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426925..21427103 | 720..897 | 99 | <- | Minus |
3R | 21433265..21433969 | 11..719 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:23 Download gff for
BO05078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252647..17252825 | 720..897 | 99 | <- | Minus |
arm_3R | 17258987..17259691 | 11..719 | 99 | <- | Minus |
BO05078.complete Sequence
916 bp (916 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629973
> BO05078.complete
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAAACAAGCACAA
GTTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACGC
AAGCTTTCTAGACCAT
BO05078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 885 | CG6570-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
lbl-RC | 1233 | CG6570-PC | 1..703 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1119 | CG6570-PA | 1..703 | 17..719 | 3515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..1048 | 17..898 | 4410 | 100 | Plus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 17..719 | 3515 | 100 | Plus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 719..17 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 21426925..21427104 | 898..719 | 900 | 100 | Minus |
3R | 32079331 | 3R | 21445093..21445425 | 711..382 | 550 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:10 has no hits.
BO05078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:25 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:23 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 141..1025 | 14..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:04 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 167..1048 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:26 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RA | 154..859 | 14..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:44 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 167..1048 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:44 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426922..21427103 | 720..900 | 98 | <- | Minus |
3R | 21433265..21433967 | 17..719 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:04 Download gff for
BO05078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252644..17252825 | 720..900 | 98 | <- | Minus |
arm_3R | 17258987..17259689 | 17..719 | 100 | | Minus |
BO05078.pep Sequence
Translation from 16 to 916
> BO05078.pep
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHDASFLDH
BO05078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-PB | 294 | CG6570-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
lbl-PA | 372 | CG6570-PA | 1..269 | 1..276 | 1216 | 88.4 | Plus |
lbl-PC | 410 | CG6570-PC | 1..269 | 1..276 | 1216 | 88.4 | Plus |
lbe-PA | 479 | CG6545-PA | 98..371 | 7..276 | 497 | 45.9 | Plus |