Clone BO05078 Report

Search the DGRC for BO05078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:78
Vector:pDNR-Dual
Associated Gene/Transcriptlbl-RB
Protein status:BO05078.pep: validated not full length
Sequenced Size:916

Clone Sequence Records

BO05078.3prime Sequence

831 bp (830 high quality bases) assembled on 2005-12-02

> BO05078.3prime
ATGGTCTAGAAAGCTTGCGTCGTGTTGCGTGTAAATAGCAACATCCACAT
CCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCCA
TTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAGT
CTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACCT
GCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGGA
GTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACTT
CTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCCG
CCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCGC
TGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCAG
GGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGCT
GGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGCG
GGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCAA
GGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCTG
GTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATCC
TCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCCT
GACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTCA
AAAGCCGCAATCGTTTCATATTCAACGATCT

BO05078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 70..703 831..198 3170 100 Minus
CG6545-PA 1440 lbe-RA 755..842 449..362 315 94.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 236..1048 831..19 4065 100 Minus
lbl-RC 1803 CG6570-RC 236..869 831..198 3170 100 Minus
lbl-RA 1855 CG6570-RA 236..869 831..198 3170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433898 198..831 3170 100 Plus
3R 32079331 3R 21426925..21427104 19..198 900 100 Plus
3R 32079331 3R 21445093..21445425 206..535 550 78.4 Plus
Blast to na_te.dros performed on 2015-02-13 05:42:47 has no hits.

BO05078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:51 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 70..703 198..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:17 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 70..703 198..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:37 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 236..1048 19..831 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:03 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 236..1048 19..831 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:03 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21426925..21427103 19..197 100 <- Plus
3R 21433265..21433898 198..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:37 Download gff for BO05078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252647..17252825 19..197 100 <- Plus
arm_3R 17258987..17259620 198..831 100   Plus

BO05078.5prime Sequence

920 bp (789 high quality bases) assembled on 2005-12-02

> BO05078.5prime
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAACAAGCACAAG
TTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACGCA
AGCTTTCTAGACCATTCCTT

BO05078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 1..703 17..719 3515 100 Plus
CG6545-PA 1440 lbe-RA 755..842 468..555 315 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..1048 17..897 4385 99.9 Plus
lbl-RC 1803 CG6570-RC 167..869 17..719 3515 100 Plus
lbl-RA 1855 CG6570-RA 167..869 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 719..17 3515 100 Minus
3R 32079331 3R 21426925..21427104 897..719 850 99.4 Minus
3R 32079331 3R 21445093..21445425 711..382 550 78.4 Minus
Blast to na_te.dros performed on 2015-02-11 04:50:35 has no hits.

BO05078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:52 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:18 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:23 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..1048 14..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:25:13 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 164..1048 14..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:25:13 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21426925..21427103 720..897 99 <- Minus
3R 21433265..21433969 11..719 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:23 Download gff for BO05078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252647..17252825 720..897 99 <- Minus
arm_3R 17258987..17259691 11..719 99 <- Minus

BO05078.complete Sequence

916 bp (916 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629973

> BO05078.complete
GAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTG
ATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATG
AAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCA
AAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGG
GGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCC
ATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGA
AAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTAC
ATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCC
TGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACT
CCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCA
GTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGC
TGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAG
AATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCA
AATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAA
AACTTTGACGAAGAGCAGGTCAGTACATCAAAGAGGCATTCAGCCCTTCG
CTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGGGCATAA
CGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAAACAAGCACAA
GTTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACGACGC
AAGCTTTCTAGACCAT

BO05078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 885 CG6570-PB 1..882 17..898 4410 100 Plus
lbl-RC 1233 CG6570-PC 1..703 17..719 3515 100 Plus
lbl-RA 1119 CG6570-PA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..1048 17..898 4410 100 Plus
lbl-RC 1803 CG6570-RC 167..869 17..719 3515 100 Plus
lbl-RA 1855 CG6570-RA 167..869 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 719..17 3515 100 Minus
3R 32079331 3R 21426925..21427104 898..719 900 100 Minus
3R 32079331 3R 21445093..21445425 711..382 550 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:10 has no hits.

BO05078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:25 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:23 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 141..1025 14..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:04 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 167..1048 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:26 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 154..859 14..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:44 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 167..1048 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:44 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21426922..21427103 720..900 98 <- Minus
3R 21433265..21433967 17..719 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:04 Download gff for BO05078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252644..17252825 720..900 98 <- Minus
arm_3R 17258987..17259689 17..719 100   Minus

BO05078.pep Sequence

Translation from 16 to 916

> BO05078.pep
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHDASFLDH

BO05078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-PB 294 CG6570-PB 1..294 1..294 1507 100 Plus
lbl-PA 372 CG6570-PA 1..269 1..276 1216 88.4 Plus
lbl-PC 410 CG6570-PC 1..269 1..276 1216 88.4 Plus
lbe-PA 479 CG6545-PA 98..371 7..276 497 45.9 Plus