Clone Sequence Records
BO05083.3prime Sequence
874 bp (821 high quality bases) assembled on 2005-12-02
> BO05083.3prime
ATGGTCTAGAAAGCTTGCCTCCGCATTCTTGATCTCGCTAAGACTGCGAC
AGGCTTCCCGTTCTCGCTCCCTTTCGCGCTCCCGTTCGCGCTGCTCCTCC
TCCAGCTTGAGCACCTTGCTCTTCAGTCCGCAAAGGATCTCCGCCGTGGC
TATGTTCTTGATGGTGCTCAGGTCCAGGTGCTGGCTGTGATTGTTGTTGT
TGTTGTCGTCGCTGTTGCAGTTGTTCCCGCCGTGATCGGCCTCCCGATCC
TGTTGATCCTGATGCTCATGATCTGGGTGATCCTGCTCTATGTTCCTATT
GATCGCGCTCAGCAGCTTGTGCTTGCCCAGCGCCAATGCTAGCCCATTGT
TGTTGTCGCCTCCCGGCTTGCTGTTGTTGTTGTTCGAGTCCGTTTCCATG
TCCAATCCGCTGTTGTTGTTGTTATCATCGTACTTGCGATCAAATCCTGC
TCCAGCCATCTCGTCGTCGTGTCCATTGTTGTTACTCAGGTTCTCTGCCG
GCGACAGTTCCGTCTTCACTTCCCGCTTGATCAGCTGAATGTCGGGCGTG
GGAGTCGCACATGTGGGCGTGGCCTCCCTGTTCCTGCTCCCGTTGGCATT
GGGTATCTGGACCAGATTCAGTGCCTCCTCATCGTTGTTGCAGTCGTTGG
ATTGCGGACTGCTGCTGCTGTTGTTGTTGTTGCTGCTCTGGTTCTGGTTG
TTGTTGCTATTGTTGGTCAGGTGATGGCTCTCCACCAGGCGGATCTTGAA
GTTGTTGTTGTGCGTGGATGGTGGCGGCGTCTGTGGCACAATGGTCGTAA
TTATGGGCTCCATAATGTTGTCCTGGGCGTGGCTGTGATTGTTGTTCAAA
GCGTCGTCATGCTGCTCGGCACTC
BO05083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-PA | 2832 | CG6118-RA | 1974..2829 | 874..19 | 4255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-RD | 4502 | CG6118-RD | 2597..3452 | 874..19 | 4265 | 99.9 | Minus |
| CG6118-RC | 4505 | CG6118-RC | 2600..3455 | 874..19 | 4265 | 99.9 | Minus |
| CG6118-RB | 4038 | CG6118-RB | 2133..2988 | 874..19 | 4265 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15422158..15423013 | 19..874 | 4265 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-04 19:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2880..3009 | 760..621 | 173 | 62.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2666 | 394..155 | 159 | 58.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2514 | 437..252 | 156 | 57.8 | Minus |
| BS | 5142 | BS BS 5142bp | 1990..2071 | 445..368 | 156 | 72.3 | Minus |
BO05083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:57 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-PA | 1974..2832 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:26 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-PA | 1974..2832 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:45 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 2133..2988 | 19..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:02 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 2133..2988 | 19..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:02 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15422158..15423013 | 19..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:45 Download gff for
BO05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11247880..11248735 | 19..874 | 99 | | Plus |
BO05083.5prime Sequence
935 bp (791 high quality bases) assembled on 2005-12-02
> BO05083.5prime
GAAGTTATCAGTCGACATGTCCGAGGAGCCCAAGCGACGCGAGTGGCCCT
TCTTCACCCTGATGGACGTGTACTTCAGCGACCAGGTTAACGATCCCTCA
CTACGTCTCTTCTCGTCCACAAAGACGCTCAAGGAGACCCTGGACGACAG
CGTCTTCGAGGATGATCCAATTATCGCCTCGGCCATTGCGGCGGCCACCA
GTGGCGCCTACATGGACATTGATGAGCTCATCCGGCGACAGAAGGAGCGT
GCCGCTCTGGCCGCCGAGCGGAAATTGGCTGCCGCTGCCAGCGGAGGCAC
TGGTGACTACAAATTCGATCTGAAGCCCATGCTATCGAACAGCAAGTTTA
ACAGCAACAGCGAGATGGCCAAGCTATCAAAGAGCGTCGATGACCTCTCT
ATGCAGCAGTACAAGATCAAGCAAGAGCTAATGCGCCAGCGGGAACAGGA
GCAGCAGGAGAACATGGTCAAGATCAAGCAGCACGTACGCCAGCAGCAGC
AGCAGCAACACCAGCAGCAGCAGCAGCAACAACACCACCAGGCCCAGCAG
CAGCAGCAGCGATTTCTGGGCCACCAGCAGGCCATGTCGCAGCATCCACA
CCGTCTGTCGTCCTCGTCGACGCCACCAGCTTTGCAGCACGCCCTGCAGC
AGCAGCAACAGCACATGCTGCAGCAGCACCAGTTGCAGCAACAGCTGCAG
CATCAGCAGCAGCAGCAACACCAACAGCAATTGCAGCAGCAGCAGCAACA
GCACCACCAACTCGCTCATCCCCACCAGCCGCACACACCGCGCCCCAGTA
CGCCACCCACCACGGCGCAGCAGATCCACATCACGGCCACCCAGCACCAG
GCCGCCCAGCAGCAGCTCCATCAGCAGCAGCAGCAGCCGTCGCACAAGCA
GCAGCAATCCTACGCCGATCCCAACACCATCGATC
BO05083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-PA | 2832 | CG6118-RA | 181..724 | 17..560 | 2720 | 100 | Plus |
| CG6118-PA | 2832 | CG6118-RA | 712..1102 | 545..935 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-RD | 4502 | CG6118-RD | 807..1728 | 17..935 | 4555 | 99.7 | Plus |
| CG6118-RC | 4505 | CG6118-RC | 807..1728 | 17..935 | 4555 | 99.7 | Plus |
| CG6118-RB | 4038 | CG6118-RB | 340..1261 | 17..935 | 4555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15424089..15425010 | 935..17 | 4530 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:43:24 has no hits.
BO05083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:58 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-PA | 174..1102 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:27 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-PA | 174..1102 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:41 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 333..1261 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:30 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 333..1261 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:30 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15424089..15425017 | 9..935 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:41 Download gff for
BO05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11249811..11250739 | 9..935 | 99 | | Minus |
BO05083.complete Sequence
2680 bp assembled on 2008-08-14
> BO05083.complete
GAAGTTATCAGTCGACATGTCCGAGGAGCCCAAGCGACGCGAGTGGCCCT
TCTTCACCCTGATGGACGTGTACTTCAGCGACCAGGTTAACGATCCCTCA
CTACGTCTCTTCTCGTCCACAAAGACGCTCAAGGAGACCCTGGACGACAG
CGTCTTCGAGGATGATCCAATTATCGCCTCGGCCATTGCGGCGGCCACCA
GTGGCGCCTACATGGACATTGATGAGCTCATCCGGCGACAGAAGGAGCGT
GCCGCTCTGGCCGCCGAGCGGAAATTGGCTGCCGCTGCCAGCGGAGGCAC
TGGTGACTACAAATTCGATCTGAAGCCCATGCTATCGAACAGCAAGTTTA
ACAGCAACAGCGAGATGGCCAAGCTATCAAAGAGCGTCGATGACCTCTCT
ATGCAGCAGTACAAGATCAAGCAAGAGCTAATGCGCCAGCGGGAACAGGA
GCAGCAGGAGAACATGGTCAAGATCAAGCAGCACGTACGCCAGCAGCAGC
AGCAGCAACACCAGCAGCAGCAGCAGCAACAACACCACCAGGCCCAGCAG
CAGCAGCAGCGATTTCTGGGCCACCAGCAGGCCATGTCGCAGCATCCACA
CCGTCTGTCGTCCTCGTCGACGCCACCAGCTTTGCAGCACGCCCTGCAGC
AGCAGCAACAGCACATGCTGCAGCAGCACCAGTTGCAGCAACAGCTGCAG
CATCAGCAGCAGCAGCAACACCAACAGCAATTGCAGCAGCAGCAGCAACA
GCACCACCAACTCGCTCATCCCCACCAGCCGCACACACCGCGCCCCAGTA
CGCCACCCACCACGGCGCAGCAGATCCACATCACGGCCACCCAGCACCAG
GCCGCCCAGCAGCAGCTCCATCAGCAGCAGCAGCAGCCGTCGCACAAGCA
GCAGCAATCCTACGCCGATCCCAACACCATCGATCAGTACCTGCTGTCGT
GGAACAACTTCCATGGCAACATGTGCCGCGGCTTCCACTCCCTGCAGAAG
GATGAGAAGATGGTGGATGTCACCATCGCAGCCGGCGGCAAGATATTCAA
GGCACACAAACTGGTCCTGTCCGTTTGCAGTCCCTACTTCCAACAGATCT
TTCTGGAGAACCCATCGAGTCACCCCATCCTGCTGATGGCCGACGTGGAG
GCCAGTCACATGGCCGGTCTGCTCGACTTTATGTACAGTGGACAGGTGAA
TGTCAAGTATGAGGATCTGCCCGTTTTCCTGAAGGTTGCCGAGGCCATGA
AAATCAAGGGGCTGCACACAGAGAAGAACCTGGACAGCGATGCCAGCGAC
ATAAGTTCGCCGCACGAAAGCGACGGCACCGAGTGCCGTTACGAGCGTGG
AACGCACAGCGTGAACATCACCAGCGGTCATGCCGCCGGCTATGGAGGAG
CACCGTCCTCGCAGCAGTCATCGCCGTCGCCTTCGCTCAATGGACCCAAT
CGCTGTCCCACGCCCCTTTCTAGCGGAGGTTCCGGCAATCCCAATTACGC
CGGCTTCCGTGAGCACATCAAGTCGAAGGCCACGCTGGCCGAGACCTTCA
TGAAGAATCTCAACAGGAACAACAACAACAACAACAGCAGCAACAACTAC
AACCACTTGGGCGGCAGCAATGGCAGTCTCAACCTGACGGAGGCGGATAG
CAACTCCTTTGCCATCCTGCAGGCGAACAGCAAGAAGATGCTGGATTCGG
CGCGCAAGCAACACAAGTATCTGGCCAAGCGAAAGATCCTGATGCACTAC
AACACGGAGCTGGGTGGTGAGAAGCGGCTAAAGGAGATGGAGCGCGATCG
CTATCCGAGTGCCGAGCAGCATGACGACGCCTTGAACAACAATCACAGCC
ACGCCCAGGACAACATTATGGAGCCCATAATTACGACCATTGTGCCACAG
ACGCCGCCACCATCCACGCACAACAACAACTTCAAGATCCGCCTGGTGGA
GAGCCATCACCTGACCAACAATAGCAACAACAACCAGAACCAGAGCAGCA
ACAACAACAACAGCAGCAGCAGTCCGCAATCCAACGACTGCAACAACGAT
GAGGAGGCACTGAATCTGGTCCAGATACCCAATGCCAACGGGAGCAGGAA
CAGGGAGGCCACGCCCACATGTGCGACTCCCACGCCCGACATTCAGCTGA
TCAAGCGGGAAGTGAAGACGGAACTGTCGCCGGCAGAGAACCTGAGTAAC
AACAATGGACACGACGACGAGATGGCTGGAGCAGGATTTGATCGCAAGTA
CGATGATAACAACAACAACAGCGGATTGGACATGGAAACGGACTCGAACA
ACAACAACAGCAAGCCGGGAGGCGACAACAACAATGGGCTAGCATTGGCG
CTGGGCAAGCACAAGCTGCTGAGCGCGATCAATAGGAACATAGAGCAGGA
TCACCCAGATCATGAGCATCAGGATCAACAGGATCGGGAGGCCGATCACG
GCGGGAACAACTGCAACAGCGACGACAACAACAACAACAATCACAGCCAG
CACCTGGACCTGAGCACCATCAAGAACATAGCCACGGCGGAGATCCTTTG
CGGACTGAAGAGCAAGGTGCTCAAGCTGGAGGAGGAGCAGCGCGAACGGG
AGCGCGAAAGGGAGCGAGAACGGGAAGCCTGTCGCAGTCTTAGCGAGATC
AAGAATGCGGAGGCAAGCTTTCTAGACCAT
BO05083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-RC | 2904 | CG6118-PC | 253..2901 | 17..2662 | 13165 | 99.9 | Plus |
| CG6118-RB | 2652 | CG6118-PB | 1..2649 | 17..2662 | 13165 | 99.9 | Plus |
| CG6118-RD | 2901 | CG6118-PD | 253..2898 | 17..2662 | 13085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-RC | 4505 | CG6118-RC | 807..3455 | 17..2662 | 13165 | 99.9 | Plus |
| CG6118-RB | 4038 | CG6118-RB | 340..2988 | 17..2662 | 13165 | 99.9 | Plus |
| CG6118-RD | 4502 | CG6118-RD | 807..3452 | 17..2662 | 13085 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15422158..15423548 | 2662..1272 | 6955 | 100 | Minus |
| 3R | 32079331 | 3R | 15423959..15425010 | 1065..17 | 5180 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15423673..15423883 | 1273..1063 | 1055 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2505..3009 | 1561..2060 | 208 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2666 | 2287..2526 | 159 | 58.5 | Plus |
BO05083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:03 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RC | 246..2901 | 9..2662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:59 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 340..2988 | 17..2664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:20 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RC | 253..2901 | 17..2664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:24 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 340..2988 | 17..2664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:24 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15423673..15423882 | 1064..1273 | 100 | <- | Minus |
| 3R | 15422155..15423546 | 1274..2664 | 99 | <- | Minus |
| 3R | 15423961..15425010 | 17..1063 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:59 Download gff for
BO05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11247877..11249268 | 1274..2664 | 99 | <- | Minus |
| arm_3R | 11249395..11249604 | 1064..1273 | 100 | <- | Minus |
| arm_3R | 11249683..11250732 | 17..1063 | 99 | | Minus |
BO05083.pep Sequence
Translation from 16 to 2680
> BO05083.pep
MSEEPKRREWPFFTLMDVYFSDQVNDPSLRLFSSTKTLKETLDDSVFEDD
PIIASAIAAATSGAYMDIDELIRRQKERAALAAERKLAAAASGGTGDYKF
DLKPMLSNSKFNSNSEMAKLSKSVDDLSMQQYKIKQELMRQREQEQQENM
VKIKQHVRQQQQQQHQQQQQQQHHQAQQQQQRFLGHQQAMSQHPHRLSSS
STPPALQHALQQQQQHMLQQHQLQQQLQHQQQQQHQQQLQQQQQQHHQLA
HPHQPHTPRPSTPPTTAQQIHITATQHQAAQQQLHQQQQQPSHKQQQSYA
DPNTIDQYLLSWNNFHGNMCRGFHSLQKDEKMVDVTIAAGGKIFKAHKLV
LSVCSPYFQQIFLENPSSHPILLMADVEASHMAGLLDFMYSGQVNVKYED
LPVFLKVAEAMKIKGLHTEKNLDSDASDISSPHESDGTECRYERGTHSVN
ITSGHAAGYGGAPSSQQSSPSPSLNGPNRCPTPLSSGGSGNPNYAGFREH
IKSKATLAETFMKNLNRNNNNNNSSNNYNHLGGSNGSLNLTEADSNSFAI
LQANSKKMLDSARKQHKYLAKRKILMHYNTELGGEKRLKEMERDRYPSAE
QHDDALNNNHSHAQDNIMEPIITTIVPQTPPPSTHNNNFKIRLVESHHLT
NNSNNNQNQSSNNNNSSSSPQSNDCNNDEEALNLVQIPNANGSRNREATP
TCATPTPDIQLIKREVKTELSPAENLSNNNGHDDEMAGAGFDRKYDDNNN
NSGLDMETDSNNNNSKPGGDNNNGLALALGKHKLLSAINRNIEQDHPDHE
HQDQQDREADHGGNNCNSDDNNNNNHSQHLDLSTIKNIATAEILCGLKSK
VLKLEEEQREREREREREREACRSLSEIKNAEASFLDH
BO05083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-PC | 967 | CG6118-PC | 85..967 | 1..882 | 4630 | 99.9 | Plus |
| CG6118-PB | 883 | CG6118-PB | 1..883 | 1..882 | 4630 | 99.9 | Plus |
| CG6118-PD | 966 | CG6118-PD | 85..966 | 1..882 | 4613 | 99.8 | Plus |
| lolal-PH | 127 | CG5738-PH | 7..116 | 307..416 | 316 | 50 | Plus |
| lolal-PG | 127 | CG5738-PG | 7..116 | 307..416 | 316 | 50 | Plus |
