Clone Sequence Records
BO05084.5prime Sequence
590 bp (589 high quality bases) assembled on 2005-12-02
> BO05084.5prime
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGGCAAGCTTTCTAGACC
BO05084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8361-PA | 561 | HLHm7-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 21..122 | 31..132 | 360 | 94.1 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 32..129 | 340 | 93.8 | Plus |
CG8346-PA | 675 | HLHm3-RA | 25..115 | 47..137 | 255 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..683 | 17..574 | 2790 | 100 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 32..145 | 405 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037720 | 17..574 | 2790 | 100 | Plus |
3R | 32079331 | 3R | 25999963..26000069 | 31..137 | 430 | 93.5 | Plus |
3R | 32079331 | 3R | 26005765..26005878 | 145..32 | 405 | 90.4 | Minus |
3R | 32079331 | 3R | 26022029..26022142 | 32..145 | 375 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:28:45 has no hits.
BO05084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:00 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-PA | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:31 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8361-PA | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:02 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..686 | 9..578 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:33 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..686 | 9..578 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:33 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037157..26037719 | 9..573 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:02 Download gff for
BO05084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862879..21863441 | 9..573 | 99 | -> | Plus |
BO05084.3prime Sequence
590 bp (589 high quality bases) assembled on 2005-12-02
> BO05084.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCACACCTGTCCGGGGCTGCTGA
TCTGGAGCAGAGACTCGTTGTCGCTGGCATATCCACTGGAAACGGGACTG
ATGGAGGAGCAGGAGCTGGCACTGGAGTAGGTGCTGGAGCTAGAGCTGGA
TCCACAGACGATACTGAGTGGAGTGTTGACGGCTTGCGGTTGTTCCATGG
GCTGCTCCAGTTGGTTGAGACGCATGCCCAGATGGGTCATCAGTGTGGTT
CCAAAAGCCACATCCACTCGGGGAAGGGAGGCCAGGGCGCGGGACACTTC
GTTGGCTGCCCGGATGTATCCAGCACGGAAACTCTGTTCGGGATTGGCCG
GAACATGCTTCTTAGACTCTTTCAGCTTGCGGAGATGCTGCACGGTGACT
TCCAGGATGTCGGCCTTCTCGAATTTGGCATCGCCAGTCTGAGCAACGCA
CTCGGCCATCAGATCCTTGAGCTCGTCCAGGCACTTGTTGATCCTGGCAC
GACGCTTCCGCTCCAGCAAGGGCTTCATCACCTTGCGGTACTGATAGGTT
TTCGACATCTCGTATTTGGTGGCCATGTCGACTGATAACT
BO05084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8361-PA | 561 | HLHm7-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
CG8333-PA | 618 | HLHmgamma-RA | 21..122 | 562..461 | 360 | 94.1 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 561..464 | 340 | 93.8 | Minus |
CG8346-PA | 675 | HLHm3-RA | 25..115 | 546..456 | 255 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..683 | 576..19 | 2790 | 100 | Minus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 562..456 | 430 | 93.5 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 561..448 | 405 | 90.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037720 | 576..19 | 2790 | 100 | Minus |
3R | 32079331 | 3R | 25999963..26000069 | 562..456 | 430 | 93.5 | Minus |
3R | 32079331 | 3R | 26005765..26005878 | 448..561 | 405 | 90.4 | Plus |
3R | 32079331 | 3R | 26022029..26022142 | 561..448 | 375 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:35:01 has no hits.
BO05084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:59 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-PA | 1..561 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:29 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8361-PA | 1..561 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:47 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..686 | 15..584 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:08 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 120..686 | 15..584 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:08 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037157..26037719 | 20..584 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:47 Download gff for
BO05084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862879..21863441 | 20..584 | 99 | -> | Minus |
BO05084.complete Sequence
592 bp (592 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629974
> BO05084.complete
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGGCAAGCTTTCTAGACCAT
BO05084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 561 | CG8361-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 21..127 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 16..129 | 32..145 | 405 | 90.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 126..683 | 17..574 | 2790 | 100 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 113..219 | 31..137 | 430 | 93.5 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..259 | 32..145 | 405 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26037163..26037720 | 17..574 | 2790 | 100 | Plus |
3R | 32079331 | 3R | 25999963..26000069 | 31..137 | 430 | 93.5 | Plus |
3R | 32079331 | 3R | 26005765..26005878 | 145..32 | 405 | 90.4 | Minus |
3R | 32079331 | 3R | 26022029..26022142 | 32..145 | 375 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:43:00 has no hits.
BO05084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:27 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 1..561 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:24 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 120..686 | 9..578 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:15 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 126..683 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:27 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm7-RA | 120..686 | 9..578 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:32 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m7-HLH-RA | 126..683 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:32 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26037163..26037720 | 17..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:15 Download gff for
BO05084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21862885..21863442 | 17..576 | 99 | | Plus |
BO05084.pep Sequence
Translation from 16 to 592
> BO05084.pep
MATKYEMSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGDA
KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALAS
LPRVDVAFGTTLMTHLGMRLNQLEQPMEQPQAVNTPLSIVCGSSSSSSTY
SSASSCSSISPVSSGYASDNESLLQISSPGQVWRPWASFLDH
BO05084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 1..186 | 1..186 | 945 | 100 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 6..186 | 428 | 48.7 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 1..195 | 1..186 | 412 | 46.3 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 4..224 | 6..186 | 323 | 38.5 | Plus |
E(spl)m8-HLH-PA | 179 | CG8365-PA | 5..179 | 8..186 | 306 | 40.7 | Plus |