Clone BO05084 Report

Search the DGRC for BO05084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptHLHm7-RA
Protein status:BO05084.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO05084.5prime Sequence

590 bp (589 high quality bases) assembled on 2005-12-02

> BO05084.5prime
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGGCAAGCTTTCTAGACC

BO05084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..558 17..574 2790 100 Plus
CG8333-PA 618 HLHmgamma-RA 21..122 31..132 360 94.1 Plus
CG14548-PA 588 HLHmbeta-RA 16..113 32..129 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 25..115 47..137 255 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..683 17..574 2790 100 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 32..145 405 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037720 17..574 2790 100 Plus
3R 32079331 3R 25999963..26000069 31..137 430 93.5 Plus
3R 32079331 3R 26005765..26005878 145..32 405 90.4 Minus
3R 32079331 3R 26022029..26022142 32..145 375 88.6 Plus
Blast to na_te.dros performed on 2015-02-11 23:28:45 has no hits.

BO05084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:00 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 17..578 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:31 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:02 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 9..578 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:33 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 9..578 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:33 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037719 9..573 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:02 Download gff for BO05084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863441 9..573 99 -> Plus

BO05084.3prime Sequence

590 bp (589 high quality bases) assembled on 2005-12-02

> BO05084.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCACACCTGTCCGGGGCTGCTGA
TCTGGAGCAGAGACTCGTTGTCGCTGGCATATCCACTGGAAACGGGACTG
ATGGAGGAGCAGGAGCTGGCACTGGAGTAGGTGCTGGAGCTAGAGCTGGA
TCCACAGACGATACTGAGTGGAGTGTTGACGGCTTGCGGTTGTTCCATGG
GCTGCTCCAGTTGGTTGAGACGCATGCCCAGATGGGTCATCAGTGTGGTT
CCAAAAGCCACATCCACTCGGGGAAGGGAGGCCAGGGCGCGGGACACTTC
GTTGGCTGCCCGGATGTATCCAGCACGGAAACTCTGTTCGGGATTGGCCG
GAACATGCTTCTTAGACTCTTTCAGCTTGCGGAGATGCTGCACGGTGACT
TCCAGGATGTCGGCCTTCTCGAATTTGGCATCGCCAGTCTGAGCAACGCA
CTCGGCCATCAGATCCTTGAGCTCGTCCAGGCACTTGTTGATCCTGGCAC
GACGCTTCCGCTCCAGCAAGGGCTTCATCACCTTGCGGTACTGATAGGTT
TTCGACATCTCGTATTTGGTGGCCATGTCGACTGATAACT

BO05084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..558 576..19 2790 100 Minus
CG8333-PA 618 HLHmgamma-RA 21..122 562..461 360 94.1 Minus
CG14548-PA 588 HLHmbeta-RA 16..113 561..464 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 25..115 546..456 255 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..683 576..19 2790 100 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 562..456 430 93.5 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 561..448 405 90.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037720 576..19 2790 100 Minus
3R 32079331 3R 25999963..26000069 562..456 430 93.5 Minus
3R 32079331 3R 26005765..26005878 448..561 405 90.4 Plus
3R 32079331 3R 26022029..26022142 561..448 375 88.6 Minus
Blast to na_te.dros performed on 2015-02-04 19:35:01 has no hits.

BO05084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:16:59 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 15..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:29 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 15..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:47 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 15..584 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:08 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 15..584 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:08 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037719 20..584 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:47 Download gff for BO05084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863441 20..584 99 -> Minus

BO05084.complete Sequence

592 bp (592 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629974

> BO05084.complete
GAAGTTATCAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATC
AGTACCGCAAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGG
ATCAACAAGTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGC
TCAGACTGGCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCG
TGCAGCATCTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAAT
CCCGAACAGAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTC
CCGCGCCCTGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACAC
TGATGACCCATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAA
CAACCGCAAGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTC
TAGCTCCAGCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCG
TTTCCAGTGGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGC
CCCGGACAGGTGTGGCGTCCCTGGGCAAGCTTTCTAGACCAT

BO05084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 561 CG8361-PA 1..558 17..574 2790 100 Plus
E(spl)mgamma-HLH-RA 618 CG8333-PA 21..127 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 588 CG14548-PA 16..129 32..145 405 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..683 17..574 2790 100 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 31..137 430 93.5 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 32..145 405 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037720 17..574 2790 100 Plus
3R 32079331 3R 25999963..26000069 31..137 430 93.5 Plus
3R 32079331 3R 26005765..26005878 145..32 405 90.4 Minus
3R 32079331 3R 26022029..26022142 32..145 375 88.6 Plus
Blast to na_te.dros performed on 2014-11-27 01:43:00 has no hits.

BO05084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:27 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 1..561 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:24 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 120..686 9..578 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:15 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 126..683 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:27 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm7-RA 120..686 9..578 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:32 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 126..683 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:32 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26037163..26037720 17..576 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:15 Download gff for BO05084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862885..21863442 17..576 99   Plus

BO05084.pep Sequence

Translation from 16 to 592

> BO05084.pep
MATKYEMSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGDA
KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALAS
LPRVDVAFGTTLMTHLGMRLNQLEQPMEQPQAVNTPLSIVCGSSSSSSTY
SSASSCSSISPVSSGYASDNESLLQISSPGQVWRPWASFLDH

BO05084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-PA 186 CG8361-PA 1..186 1..186 945 100 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 8..205 6..186 428 48.7 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 1..195 1..186 412 46.3 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 6..186 323 38.5 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 5..179 8..186 306 40.7 Plus