Clone Sequence Records
BO05086.3prime Sequence
836 bp (835 high quality bases) assembled on 2005-12-02
> BO05086.3prime
ATGGTCTAGAAAGCTTGCCGCTCCCCAATGATCGTTGCCATTATCATAAG
GTGAACTACTTCCGCCGCTCCAGGCACAGCATCCATTGCCATTTTGACCC
ACGGAGCTCTCCCGCAGCATGGCCTGCAGGTGATTAATGTAGTTGATGGC
AATCCTCAAACTCTCGATTTTGGAGTACTTTTTCCCATTTGGCTTGGATA
TGGGTAGCTTGGAGCGCAGTAAGTCAAAGGCTCGGTTCATGTCCCGCATC
CTGGTTCTTTCCCGATCGCAGGCGGTGCGTCTATAGTCCTTCTCCATTTG
CAGCGCCTTCTCCCGCCAGGCGGGATTGTGCTCTTTGGCGATGTCCACCT
CAGTGCTATTGGCTATACTACCGCCGCTATAGCTCATATACATGGGCGGA
GGTACCAGCTCACTGGGTTTGTTGCATTCCAAGCCCACTGGCGAACCGGT
GGCCACCTGGCCAGCATGCCACATCGACACCGGCTGAGGTATAACGCTAT
ATGTGGGTGGCAACAGACCCATATTGTGCGCTTCCTTCTCGTAGCCACCC
ATCACGCTGGGTGAGTAGCTATGCGGATGAGTTGGCGCATATGCCAGCAA
GCCTGCTCCATCCGCGGTTAGGGTGTAGTTGAGACTAACTGCCGGACAAC
TGGACGATTGAGGGGCACCGAGCTCTAGAAGAACGGGCTGTTCCGATGAT
TCCGCCTCGCCCTCGGATCCACCGCTCAAATAGGGTCCACCGGTGGTGGC
TGATACGGGCACCAAAACTGGCGGTGGATCACCCGGTACGCCGGCCGTGG
AGCTCAGCAGTTGATCCGTCATGTCGACTGATAACT
BO05086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12952-PA | 807 | sage-RA | 1..804 | 822..19 | 4020 | 100 | Minus |
| CG12952-PB | 537 | sage-RB | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1204 | 822..19 | 4020 | 100 | Minus |
| sage-RA | 1105 | CG12952-RA | 78..881 | 822..19 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 154..822 | 3345 | 100 | Plus |
| 3R | 32079331 | 3R | 9262878..9263015 | 19..156 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:37:57 has no hits.
BO05086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:02 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-PA | 1..807 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:35 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12952-PA | 1..807 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:18 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:57 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:57 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262872..9263013 | 11..154 | 97 | <- | Plus |
| 3R | 9263075..9263749 | 155..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:18 Download gff for
BO05086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088594..5088735 | 11..154 | 97 | <- | Plus |
| arm_3R | 5088797..5089471 | 155..834 | 99 | | Plus |
BO05086.5prime Sequence
836 bp (742 high quality bases) assembled on 2005-12-02
> BO05086.5prime
GAAGTTATCAGTCGACATGACGGATCAACTGCTGAGCTCCACGGCCGGCG
TACCGGGTGATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGT
GGACCCTATTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACA
GCCCGTTCTTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAG
TTAGTCTCAACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATAT
GCGCCAACTCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGA
GAAGGAAGCGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATAC
CTCAGCCGGTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCA
GTGGGCTTGGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTA
TATGAGCTATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCG
CCAAAGAGCACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAG
GACTATAGACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACAT
GAACCGAGCCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAA
ATGGGAAAAAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTAC
ATTAATCACCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGG
CAATGGATGCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATG
GCAACGATCATTGGGGAGCGGCAAGCTTTCTAGACC
BO05086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12952-PA | 807 | sage-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
| CG12952-PB | 537 | sage-RB | 1..534 | 287..820 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1204 | 17..820 | 4020 | 100 | Plus |
| sage-RA | 1105 | CG12952-RA | 78..881 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 685..17 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 9262878..9263015 | 820..683 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:14:21 has no hits.
BO05086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:03 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-PA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:37 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12952-PA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:45 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 5..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:37 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 71..887 | 5..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:37 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262872..9263013 | 685..828 | 97 | <- | Minus |
| 3R | 9263075..9263749 | 5..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:45 Download gff for
BO05086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088594..5088735 | 685..828 | 97 | <- | Minus |
| arm_3R | 5088797..5089471 | 5..684 | 99 | | Minus |
BO05086.complete Sequence
838 bp (838 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629975
> BO05086.complete
GAAGTTATCAGTCGACATGACGGATCAACTGCTGAGCTCCACGGCCGGCG
TACCGGGTGATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGT
GGACCCTATTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACA
GCCCGTTCTTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAG
TTAGTCTCAACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATAT
GCGCCAACTCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGA
GAAGGAAGCGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATAC
CTCAGCCGGTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCA
GTGGGCTTGGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTA
TATGAGCTATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCG
CCAAAGAGCACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAG
GACTATAGACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACAT
GAACCGAGCCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAA
ATGGGAAAAAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTAC
ATTAATCACCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGG
CAATGGATGCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATG
GCAACGATCATTGGGGAGCGGCAAGCTTTCTAGACCAT
BO05086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 807 | CG12952-PC | 1..804 | 17..820 | 4020 | 100 | Plus |
| sage-RA | 807 | CG12952-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-RC | 1428 | CG12952-RC | 401..1204 | 17..820 | 4020 | 100 | Plus |
| sage-RA | 1105 | CG12952-RA | 78..881 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9263074..9263742 | 685..17 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 9262878..9263015 | 820..683 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:25 has no hits.
BO05086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:28 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:26 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..810 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:44 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 78..881 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:28 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 1..810 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:36 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sage-RA | 78..881 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:36 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9262876..9263013 | 685..822 | 98 | <- | Minus |
| 3R | 9263075..9263742 | 17..684 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:44 Download gff for
BO05086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5088598..5088735 | 685..822 | 98 | <- | Minus |
| arm_3R | 5088797..5089464 | 17..684 | 100 | | Minus |
BO05086.pep Sequence
Translation from 16 to 838
> BO05086.pep
MTDQLLSSTAGVPGDPPPVLVPVSATTGGPYLSGGSEGEAESSEQPVLLE
LGAPQSSSCPAVSLNYTLTADGAGLLAYAPTHPHSYSPSVMGGYEKEAHN
MGLLPPTYSVIPQPVSMWHAGQVATGSPVGLECNKPSELVPPPMYMSYSG
GSIANSTEVDIAKEHNPAWREKALQMEKDYRRTACDRERTRMRDMNRAFD
LLRSKLPISKPNGKKYSKIESLRIAINYINHLQAMLRESSVGQNGNGCCA
WSGGSSSPYDNGNDHWGAASFLDH
BO05086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sage-PC | 268 | CG12952-PC | 1..268 | 1..268 | 1431 | 100 | Plus |
| sage-PA | 268 | CG12952-PA | 1..268 | 1..268 | 1431 | 100 | Plus |
