Clone Sequence Records
BO05087.3prime Sequence
848 bp (791 high quality bases) assembled on 2005-12-02
> BO05087.3prime
ATGGTCTAGAAAGCTTGCAACTTCCTGACACAAAAGGTCGAATTGCGACT
GCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCAG
GTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGGT
GACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCGA
GATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTTC
CTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGGT
GAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGGA
CCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCAG
TAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTGC
CTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGAT
ATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTTA
TTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGGG
TAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCCT
CCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCACC
GGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTACT
CTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGCC
CCCTTCGCCGCTTGGTCGTTTTCTTCTTGGTTGAGGGATCATTGGGTT
BO05087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 281..1110 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 349..1178 | 848..19 | 4150 | 100 | Minus |
CG8145-RC | 1862 | CG8145-RC | 349..1178 | 848..19 | 4150 | 100 | Minus |
CG8145-RA | 1217 | CG8145-RA | 349..1178 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723593..8723951 | 848..490 | 1795 | 100 | Minus |
3R | 32079331 | 3R | 8724134..8724382 | 490..242 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 8724448..8724673 | 244..19 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:34:29 has no hits.
BO05087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:04 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 281..1113 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:38 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 281..1113 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:23 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 349..1181 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:00 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 349..1181 | 15..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:00 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8724134..8724382 | 242..490 | 100 | -> | Minus |
3R | 8723593..8723950 | 491..848 | 100 | -> | Minus |
3R | 8724451..8724676 | 15..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:23 Download gff for
BO05087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4549315..4549672 | 491..848 | 100 | -> | Minus |
arm_3R | 4549856..4550104 | 242..490 | 100 | -> | Minus |
arm_3R | 4550173..4550398 | 15..241 | 99 | | Minus |
BO05087.5prime Sequence
829 bp (786 high quality bases) assembled on 2005-12-02
> BO05087.5prime
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCCGGGTCCACACCAACGAGCG
BO05087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 1..775 | 35..809 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 51..862 | 17..829 | 4040 | 99.9 | Plus |
CG8145-RC | 1862 | CG8145-RC | 51..862 | 17..829 | 4040 | 99.9 | Plus |
CG8145-RA | 1217 | CG8145-RA | 51..862 | 17..829 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723433..8723951 | 155..673 | 2595 | 100 | Plus |
3R | 32079331 | 3R | 8724134..8724289 | 673..829 | 735 | 99.4 | Plus |
3R | 32079331 | 3R | 8723224..8723361 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:58:23 has no hits.
BO05087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:05 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..794 | 35..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:40 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..794 | 35..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:32 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 43..862 | 8..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:09 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 43..862 | 8..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:09 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8724134..8724289 | 673..829 | 99 | | Plus |
3R | 8723216..8723361 | 8..154 | 97 | -> | Plus |
3R | 8723433..8723950 | 155..672 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:32 Download gff for
BO05087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4548938..4549083 | 8..154 | 97 | -> | Plus |
arm_3R | 4549155..4549672 | 155..672 | 100 | -> | Plus |
arm_3R | 4549856..4550011 | 673..829 | 99 | | Plus |
BO05087.complete Sequence
1162 bp (1162 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629976
> BO05087.complete
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGC
GGCAAGGCCTTCACCAGGACCTGCATTCTGAAGGCCCACATGGCGGTCCA
CCAAGTTGTAAGGAAGTATAGTTGCGATGTCTGCGATCGTTCGTTCAGCC
TGAAGAAACATCTCGCTACGCACTTCATCTCCAATACCCACAAGCGGAAT
GCTGAAGCCGTCACCTCGTCGTCGGAGTACATGTCCATGCTCAGTTTTGA
ATCGGATGAAACCTGGTCCCAAGGCACTCCACTGACCACTTCCATTGACG
AGGATCTGGTGCAGTCGCAATTCGACCTTTTGTGTCAGGAAGTTGCAAGC
TTTCTAGACCAT
BO05087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1113 | CG8145-PB | 1..1110 | 35..1144 | 5550 | 100 | Plus |
CG8145-RC | 1113 | CG8145-PC | 1..1110 | 35..1144 | 5550 | 100 | Plus |
CG8145-RA | 1113 | CG8145-PA | 1..1110 | 35..1144 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 51..1178 | 17..1144 | 5640 | 100 | Plus |
CG8145-RC | 1862 | CG8145-RC | 51..1178 | 17..1144 | 5640 | 100 | Plus |
CG8145-RA | 1217 | CG8145-RA | 51..1178 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723433..8723951 | 155..673 | 2595 | 100 | Plus |
3R | 32079331 | 3R | 8724134..8724382 | 673..921 | 1245 | 100 | Plus |
3R | 32079331 | 3R | 8724448..8724673 | 919..1144 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 8723224..8723361 | 17..154 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:01:46 has no hits.
BO05087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:11 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1113 | 35..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:05 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1131 | 17..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:13 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 53..1178 | 19..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:11 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 1..1131 | 17..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:06 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 53..1178 | 19..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:06 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8723226..8723361 | 19..154 | 100 | -> | Plus |
3R | 8723433..8723950 | 155..672 | 100 | -> | Plus |
3R | 8724134..8724382 | 673..921 | 100 | -> | Plus |
3R | 8724451..8724673 | 922..1146 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:13 Download gff for
BO05087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4548948..4549083 | 19..154 | 100 | -> | Plus |
arm_3R | 4549155..4549672 | 155..672 | 100 | -> | Plus |
arm_3R | 4549856..4550104 | 673..921 | 100 | -> | Plus |
arm_3R | 4550173..4550395 | 922..1146 | 99 | | Plus |
BO05087.pep Sequence
Translation from 34 to 1162
> BO05087.pep
MLINVCRVCGRSRLCPKAVELFKPGRQDILRRIQLITGILLQQIPNAPDM
VCFCCQTDLQSAMIFRRQCILQQKKWVPLLQSDKVGASEEKKVEPNDPST
KKKTTKRRRGRPRMPLEIVDIVVTNESKASAGESVGGDEFDQPVEISNEP
DATDSDVNLEEIDLPDEDGLESDHDLPNVQIHKCDTCGIIKNNKSSLVRH
QFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFS
VVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVC
DRSFSLKKHLATHFISNTHKRNAEAVTSSSEYMSMLSFESDETWSQGTPL
TTSIDEDLVQSQFDLLCQEVASFLDH
BO05087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PB | 370 | CG8145-PB | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8145-PC | 370 | CG8145-PC | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8145-PA | 370 | CG8145-PA | 1..370 | 1..370 | 1978 | 100 | Plus |
CG8159-PB | 399 | CG8159-PB | 1..333 | 1..324 | 596 | 39.1 | Plus |
CG11762-PA | 312 | CG11762-PA | 1..308 | 1..324 | 569 | 36.4 | Plus |