Clone BO05087 Report

Search the DGRC for BO05087

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG8145-RA
Protein status:BO05087.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO05087.3prime Sequence

848 bp (791 high quality bases) assembled on 2005-12-02

> BO05087.3prime
ATGGTCTAGAAAGCTTGCAACTTCCTGACACAAAAGGTCGAATTGCGACT
GCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCAG
GTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGGT
GACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCGA
GATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTTC
CTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGGT
GAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGGA
CCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCAG
TAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTGC
CTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGAT
ATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTTA
TTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGGG
TAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCCT
CCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCACC
GGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTACT
CTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGCC
CCCTTCGCCGCTTGGTCGTTTTCTTCTTGGTTGAGGGATCATTGGGTT

BO05087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 281..1110 848..19 4150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 349..1178 848..19 4150 100 Minus
CG8145-RC 1862 CG8145-RC 349..1178 848..19 4150 100 Minus
CG8145-RA 1217 CG8145-RA 349..1178 848..19 4150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723593..8723951 848..490 1795 100 Minus
3R 32079331 3R 8724134..8724382 490..242 1245 100 Minus
3R 32079331 3R 8724448..8724673 244..19 1130 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:34:29 has no hits.

BO05087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:04 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 281..1113 15..848 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:38 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 281..1113 15..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:23 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 349..1181 15..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:00 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 349..1181 15..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:00 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8724134..8724382 242..490 100 -> Minus
3R 8723593..8723950 491..848 100 -> Minus
3R 8724451..8724676 15..241 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:23 Download gff for BO05087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4549315..4549672 491..848 100 -> Minus
arm_3R 4549856..4550104 242..490 100 -> Minus
arm_3R 4550173..4550398 15..241 99   Minus

BO05087.5prime Sequence

829 bp (786 high quality bases) assembled on 2005-12-02

> BO05087.5prime
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCCGGGTCCACACCAACGAGCG

BO05087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 1..775 35..809 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 51..862 17..829 4040 99.9 Plus
CG8145-RC 1862 CG8145-RC 51..862 17..829 4040 99.9 Plus
CG8145-RA 1217 CG8145-RA 51..862 17..829 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723433..8723951 155..673 2595 100 Plus
3R 32079331 3R 8724134..8724289 673..829 735 99.4 Plus
3R 32079331 3R 8723224..8723361 17..154 690 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:58:23 has no hits.

BO05087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:05 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..794 35..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:40 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..794 35..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:32 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 43..862 8..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:09 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 43..862 8..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:09 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8724134..8724289 673..829 99   Plus
3R 8723216..8723361 8..154 97 -> Plus
3R 8723433..8723950 155..672 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:32 Download gff for BO05087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4548938..4549083 8..154 97 -> Plus
arm_3R 4549155..4549672 155..672 100 -> Plus
arm_3R 4549856..4550011 673..829 99   Plus

BO05087.complete Sequence

1162 bp (1162 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629976

> BO05087.complete
GAAGTTATCAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGT
GCCGAGTTTGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTC
AAACCTGGCAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAAT
TCTCCTTCAGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCC
AGACAGATCTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAG
CAGAAGAAATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGA
GGAAAAGAAGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCA
AGCGGCGAAGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTC
GTAACGAACGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGA
ATTTGATCAGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCG
ATGTTAATCTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCG
GATCACGATTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAAT
TATCAAAAATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATG
GAATAAGACCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCG
AGTGAGCTGAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTT
CGCCTGTCGCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGA
AGCACGAGCGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGC
GGCAAGGCCTTCACCAGGACCTGCATTCTGAAGGCCCACATGGCGGTCCA
CCAAGTTGTAAGGAAGTATAGTTGCGATGTCTGCGATCGTTCGTTCAGCC
TGAAGAAACATCTCGCTACGCACTTCATCTCCAATACCCACAAGCGGAAT
GCTGAAGCCGTCACCTCGTCGTCGGAGTACATGTCCATGCTCAGTTTTGA
ATCGGATGAAACCTGGTCCCAAGGCACTCCACTGACCACTTCCATTGACG
AGGATCTGGTGCAGTCGCAATTCGACCTTTTGTGTCAGGAAGTTGCAAGC
TTTCTAGACCAT

BO05087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1113 CG8145-PB 1..1110 35..1144 5550 100 Plus
CG8145-RC 1113 CG8145-PC 1..1110 35..1144 5550 100 Plus
CG8145-RA 1113 CG8145-PA 1..1110 35..1144 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 51..1178 17..1144 5640 100 Plus
CG8145-RC 1862 CG8145-RC 51..1178 17..1144 5640 100 Plus
CG8145-RA 1217 CG8145-RA 51..1178 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723433..8723951 155..673 2595 100 Plus
3R 32079331 3R 8724134..8724382 673..921 1245 100 Plus
3R 32079331 3R 8724448..8724673 919..1144 1130 100 Plus
3R 32079331 3R 8723224..8723361 17..154 690 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:01:46 has no hits.

BO05087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:11 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1113 35..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:05 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:13 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 53..1178 19..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:11 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:06 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 53..1178 19..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:06 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8723226..8723361 19..154 100 -> Plus
3R 8723433..8723950 155..672 100 -> Plus
3R 8724134..8724382 673..921 100 -> Plus
3R 8724451..8724673 922..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:13 Download gff for BO05087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4548948..4549083 19..154 100 -> Plus
arm_3R 4549155..4549672 155..672 100 -> Plus
arm_3R 4549856..4550104 673..921 100 -> Plus
arm_3R 4550173..4550395 922..1146 99   Plus

BO05087.pep Sequence

Translation from 34 to 1162

> BO05087.pep
MLINVCRVCGRSRLCPKAVELFKPGRQDILRRIQLITGILLQQIPNAPDM
VCFCCQTDLQSAMIFRRQCILQQKKWVPLLQSDKVGASEEKKVEPNDPST
KKKTTKRRRGRPRMPLEIVDIVVTNESKASAGESVGGDEFDQPVEISNEP
DATDSDVNLEEIDLPDEDGLESDHDLPNVQIHKCDTCGIIKNNKSSLVRH
QFEHNGIRPYPCKECPKTFLVASELKAHNLTHHTLEPPFACRYCDRRYFS
VVGRKKHERVHTNERPFVCDQCGKAFTRTCILKAHMAVHQVVRKYSCDVC
DRSFSLKKHLATHFISNTHKRNAEAVTSSSEYMSMLSFESDETWSQGTPL
TTSIDEDLVQSQFDLLCQEVASFLDH

BO05087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PB 370 CG8145-PB 1..370 1..370 1978 100 Plus
CG8145-PC 370 CG8145-PC 1..370 1..370 1978 100 Plus
CG8145-PA 370 CG8145-PA 1..370 1..370 1978 100 Plus
CG8159-PB 399 CG8159-PB 1..333 1..324 596 39.1 Plus
CG11762-PA 312 CG11762-PA 1..308 1..324 569 36.4 Plus