Clone Sequence Records
BO05089.3prime Sequence
869 bp (762 high quality bases) assembled on 2005-12-02
> BO05089.3prime
ATGGTCTAGAAAGCTTGCGGATGCTCTGAAAGATTGAACTGTTATACCAT
CAACTGCTGGCGCTTCGCTACCGGCAATAACACACACATTATCGCTGCTC
CGCTGTGCAGCCGCTAGTAGACTGCCGCTCGAGCTTGAGTTCGAATTGGA
GGCACTGGCAGCGTTGGAGGCCGCGGAGAGGACCACGCTGTGCGGAGAGC
TGCCACGCCGCACCACCTTCGCCTGGCCCTGCTGCGGCGAGTTCTGGGTG
ACTATCACAAACTTTTGCGCCGGCTGGTTGGCCTGAATGGCTCTTATTTG
CGGCAGGGACGAGACTCCGGGACTTCCCTGTCTCTGTGTGGTGGGCATGG
ACACTCGTCCGATGGTTGTTGCTGTTTGTGCTGCACTCGTGATGGGTGCC
GTGTTGATAGTGTTGGATGACAGGGTTACAATGCTTGAGGCGGGCGCATT
TCGAACTTTGACTACTGCCTGGCACAGCGACGGCCCCAGGAAGCCAAAGT
CGTTCTTGTAGTCCTCCGCTGTATCTGGCGCTGAGCGCATTTGCCTGAGA
ATCGGGGGACAGCACTTCTGAAGCATGGCGCGGATGTGACCTGCTGCTGT
CTTGTCAGTGTTGCTGATGGAGGTGCCGAGCAGGTGAGGTTCAATGCGCT
CCGATATGAACTTAAGGCGGGGTATGATGAAAACCTTTATGACTTCGCCC
CCCAGCTCCGAGAGACCCGCAATAGAGCCGTAAAGCGAGGACAGGTGGGT
CTTGTCGTTCTGCAGGGCCTTGCTGAAGATGCGGGTGACACGGGTTTGCA
GATTGTTGGTTAGGGTATTGAAGTTCTTGCAGATTTGAGCCATCAGTCGG
GAGGCAAAGTCTCGCAGGG
BO05089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32211-PA | 1821 | Taf6-RA | 968..1818 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf6-RA | 2056 | CG32211-RA | 1040..1890 | 869..19 | 4255 | 100 | Minus |
Taf6-RB | 2053 | CG32211-RB | 1040..1887 | 869..19 | 4200 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19600333..19600789 | 782..326 | 2285 | 100 | Minus |
3L | 28110227 | 3L | 19600909..19601216 | 326..19 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 19600189..19600276 | 869..782 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:35:11 has no hits.
BO05089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:08 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-PA | 968..1821 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:44 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32211-PA | 968..1821 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:49 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 1040..1890 | 19..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:12 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 1040..1890 | 19..869 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:12 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19600189..19600276 | 782..869 | 100 | -> | Minus |
3L | 19600334..19600789 | 326..781 | 100 | -> | Minus |
3L | 19600910..19601216 | 19..325 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:49 Download gff for
BO05089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19593289..19593376 | 782..869 | 100 | -> | Minus |
arm_3L | 19593434..19593889 | 326..781 | 100 | -> | Minus |
arm_3L | 19594010..19594316 | 19..325 | 100 | | Minus |
BO05089.5prime Sequence
917 bp (758 high quality bases) assembled on 2005-12-02
> BO05089.5prime
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCTTTCGCTGTTTCTGGAGAATAC
CTCCACGAACTGATACC
BO05089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32211-PA | 1821 | Taf6-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf6-RB | 2053 | CG32211-RB | 73..974 | 17..917 | 4470 | 99.8 | Plus |
Taf6-RA | 2056 | CG32211-RA | 73..974 | 17..917 | 4470 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19599160..19600040 | 17..897 | 4390 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 05:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 1457..1499 | 174..132 | 116 | 74.4 | Minus |
BO05089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:09 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:45 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32211-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:44 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 70..974 | 14..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:42 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 70..974 | 14..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:42 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19599157..19600044 | 14..900 | 99 | -> | Plus |
3L | 19600107..19600123 | 901..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:44 Download gff for
BO05089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19592257..19593144 | 14..900 | 99 | -> | Plus |
arm_3L | 19593207..19593223 | 901..917 | 100 | | Plus |
BO05089.complete Sequence
1852 bp (1852 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629978
> BO05089.complete
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAAATA
CCTCCACGAACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGC
TGTGTATGCGCCCCGAGCTGGACAATCACTGGGCCCTGCGAGACTTTGCC
TCCCGACTGATGGCTCAAATCTGCAAGAACTTCAATACCCTAACCAACAA
TCTGCAAACCCGTGTCACCCGCATCTTCAGCAAGGCCCTGCAGAACGACA
AGACCCACCTGTCCTCGCTTTACGGCTCTATTGCGGGTCTCTCGGAGCTG
GGGGGCGAAGTCATAAAGGTTTTCATCATACCCCGCCTTAAGTTCATATC
GGAGCGCATTGAACCTCACCTGCTCGGCACCTCCATCAGCAACACTGACA
AGACAGCAGCAGGTCACATCCGCGCCATGCTTCAGAAGTGCTGTCCCCCG
ATTCTCAGGCAAATGCGCTCAGCGCCAGATACAGCGGAGGACTACAAGAA
CGACTTTGGCTTCCTGGGGCCGTCGCTGTGCCAGGCAGTAGTCAAAGTTC
GAAATGCGCCCGCCTCAAGCATTGTAACCCTGTCATCCAACACTATCAAC
ACGGCACCCATCACGAGTGCAGCACAAACAGCAACAACCATCGGACGAGT
GTCCATGCCCACCACACAGAGACAGGGAAGTCCCGGAGTCTCGTCCCTGC
CGCAAATAAGAGCCATTCAGGCCAACCAGCCGGCGCAAAAGTTTGTGATA
GTCACCCAGAACTCGCCGCAGCAGGGCCAGGCGAAGGTGGTGCGGCGTGG
CAGCTCTCCGCACAGCGTGGTCCTCTCCGCGGCCTCCAACGCTGCCAGTG
CCTCCAATTCGAACTCAAGCTCGAGCGGCAGTCTACTAGCGGCTGCACAG
CGGAGCAGCGATAATGTGTGTGTTATTGCCGGTAGCGAAGCGCCAGCAGT
TGATGGTATAACAGTTCAATCTTTCAGAGCATCCGCAAGCTTTCTAGACC
AT
BO05089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf6-RA | 1821 | CG32211-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Taf6-RB | 1818 | CG32211-PB | 1..1815 | 17..1834 | 9010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf6-RA | 2056 | CG32211-RA | 73..1890 | 17..1834 | 9090 | 100 | Plus |
Taf6-RB | 2053 | CG32211-RB | 73..1887 | 17..1834 | 9010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19599160..19600044 | 17..901 | 4425 | 100 | Plus |
3L | 28110227 | 3L | 19600333..19600789 | 1071..1527 | 2285 | 100 | Plus |
3L | 28110227 | 3L | 19600909..19601216 | 1527..1834 | 1540 | 100 | Plus |
3L | 28110227 | 3L | 19600103..19600276 | 898..1071 | 855 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 00:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 1457..1499 | 174..132 | 116 | 74.4 | Minus |
BO05089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:51 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 1..1821 | 17..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:56 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 71..1891 | 14..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:56 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 73..1890 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:51 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 71..1891 | 14..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:23 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf6-RA | 73..1890 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:23 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19599160..19600044 | 17..901 | 100 | -> | Plus |
3L | 19600107..19600276 | 902..1071 | 100 | -> | Plus |
3L | 19600334..19600789 | 1072..1527 | 100 | -> | Plus |
3L | 19600910..19601216 | 1528..1836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:56 Download gff for
BO05089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19592260..19593144 | 17..901 | 100 | -> | Plus |
arm_3L | 19593207..19593376 | 902..1071 | 100 | -> | Plus |
arm_3L | 19593434..19593889 | 1072..1527 | 100 | -> | Plus |
arm_3L | 19594010..19594316 | 1528..1836 | 99 | | Plus |
BO05089.pep Sequence
Translation from 16 to 1852
> BO05089.pep
MSGKPSKPSSPSSSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDV
SIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIP
FRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQP
TVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVET
IHVKQLATHELSVEQQLYYKEITEACVGSDEPRRGEALQSLGSDPGLHEM
LPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELI
PSVMTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRV
TRIFSKALQNDKTHLSSLYGSIAGLSELGGEVIKVFIIPRLKFISERIEP
HLLGTSISNTDKTAAGHIRAMLQKCCPPILRQMRSAPDTAEDYKNDFGFL
GPSLCQAVVKVRNAPASSIVTLSSNTINTAPITSAAQTATTIGRVSMPTT
QRQGSPGVSSLPQIRAIQANQPAQKFVIVTQNSPQQGQAKVVRRGSSPHS
VVLSAASNAASASNSNSSSSGSLLAAAQRSSDNVCVIAGSEAPAVDGITV
QSFRASASFLDH
BO05089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf6-PA | 606 | CG32211-PA | 1..606 | 1..606 | 3047 | 100 | Plus |
Taf6-PB | 605 | CG32211-PB | 1..605 | 1..606 | 3031 | 99.8 | Plus |
mia-PC | 589 | CG10390-PC | 169..555 | 198..570 | 566 | 34.7 | Plus |
mia-PB | 589 | CG10390-PB | 169..555 | 198..570 | 566 | 34.7 | Plus |
mia-PA | 589 | CG10390-PA | 169..555 | 198..570 | 566 | 34.7 | Plus |