Clone BO05089 Report

Search the DGRC for BO05089

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptTaf6-RA
Protein status:BO05089.pep: validated full length
Sequenced Size:1852

Clone Sequence Records

BO05089.3prime Sequence

869 bp (762 high quality bases) assembled on 2005-12-02

> BO05089.3prime
ATGGTCTAGAAAGCTTGCGGATGCTCTGAAAGATTGAACTGTTATACCAT
CAACTGCTGGCGCTTCGCTACCGGCAATAACACACACATTATCGCTGCTC
CGCTGTGCAGCCGCTAGTAGACTGCCGCTCGAGCTTGAGTTCGAATTGGA
GGCACTGGCAGCGTTGGAGGCCGCGGAGAGGACCACGCTGTGCGGAGAGC
TGCCACGCCGCACCACCTTCGCCTGGCCCTGCTGCGGCGAGTTCTGGGTG
ACTATCACAAACTTTTGCGCCGGCTGGTTGGCCTGAATGGCTCTTATTTG
CGGCAGGGACGAGACTCCGGGACTTCCCTGTCTCTGTGTGGTGGGCATGG
ACACTCGTCCGATGGTTGTTGCTGTTTGTGCTGCACTCGTGATGGGTGCC
GTGTTGATAGTGTTGGATGACAGGGTTACAATGCTTGAGGCGGGCGCATT
TCGAACTTTGACTACTGCCTGGCACAGCGACGGCCCCAGGAAGCCAAAGT
CGTTCTTGTAGTCCTCCGCTGTATCTGGCGCTGAGCGCATTTGCCTGAGA
ATCGGGGGACAGCACTTCTGAAGCATGGCGCGGATGTGACCTGCTGCTGT
CTTGTCAGTGTTGCTGATGGAGGTGCCGAGCAGGTGAGGTTCAATGCGCT
CCGATATGAACTTAAGGCGGGGTATGATGAAAACCTTTATGACTTCGCCC
CCCAGCTCCGAGAGACCCGCAATAGAGCCGTAAAGCGAGGACAGGTGGGT
CTTGTCGTTCTGCAGGGCCTTGCTGAAGATGCGGGTGACACGGGTTTGCA
GATTGTTGGTTAGGGTATTGAAGTTCTTGCAGATTTGAGCCATCAGTCGG
GAGGCAAAGTCTCGCAGGG

BO05089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32211-PA 1821 Taf6-RA 968..1818 869..19 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 2056 CG32211-RA 1040..1890 869..19 4255 100 Minus
Taf6-RB 2053 CG32211-RB 1040..1887 869..19 4200 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19600333..19600789 782..326 2285 100 Minus
3L 28110227 3L 19600909..19601216 326..19 1540 100 Minus
3L 28110227 3L 19600189..19600276 869..782 440 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:35:11 has no hits.

BO05089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:08 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-PA 968..1821 18..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:44 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32211-PA 968..1821 18..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:49 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1040..1890 19..869 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:38:12 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1040..1890 19..869 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:38:12 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19600189..19600276 782..869 100 -> Minus
3L 19600334..19600789 326..781 100 -> Minus
3L 19600910..19601216 19..325 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:49 Download gff for BO05089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19593289..19593376 782..869 100 -> Minus
arm_3L 19593434..19593889 326..781 100 -> Minus
arm_3L 19594010..19594316 19..325 100   Minus

BO05089.5prime Sequence

917 bp (758 high quality bases) assembled on 2005-12-02

> BO05089.5prime
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCTTTCGCTGTTTCTGGAGAATAC
CTCCACGAACTGATACC

BO05089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32211-PA 1821 Taf6-RA 1..881 17..897 4380 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RB 2053 CG32211-RB 73..974 17..917 4470 99.8 Plus
Taf6-RA 2056 CG32211-RA 73..974 17..917 4470 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599160..19600040 17..897 4390 99.9 Plus
Blast to na_te.dros performed 2015-02-13 05:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 174..132 116 74.4 Minus

BO05089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:09 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-PA 1..902 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:45 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32211-PA 1..902 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:44 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 70..974 14..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:42 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 70..974 14..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:42 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19599157..19600044 14..900 99 -> Plus
3L 19600107..19600123 901..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:44 Download gff for BO05089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592257..19593144 14..900 99 -> Plus
arm_3L 19593207..19593223 901..917 100   Plus

BO05089.complete Sequence

1852 bp (1852 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629978

> BO05089.complete
GAAGTTATCAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCT
CCAGCAGCATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTG
ATCGCGGAGAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGA
ACTAGCGGAGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGG
CCAAGTTCATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATC
GACATGTCCCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGC
CAAGGACTTCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGC
ACTTCACCGAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAAC
TCTGTAAAAATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGT
GGAGGGAGTGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGG
ATTCCCAGTTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGC
CTAAACAAAGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCT
GAAAAACGTGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGT
CCGTGGAGCAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGA
TCTGATGAGCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCC
TGGCCTGCACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAG
TTAAGGTCAATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATG
CGCATGGTTCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAAATA
CCTCCACGAACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGC
TGTGTATGCGCCCCGAGCTGGACAATCACTGGGCCCTGCGAGACTTTGCC
TCCCGACTGATGGCTCAAATCTGCAAGAACTTCAATACCCTAACCAACAA
TCTGCAAACCCGTGTCACCCGCATCTTCAGCAAGGCCCTGCAGAACGACA
AGACCCACCTGTCCTCGCTTTACGGCTCTATTGCGGGTCTCTCGGAGCTG
GGGGGCGAAGTCATAAAGGTTTTCATCATACCCCGCCTTAAGTTCATATC
GGAGCGCATTGAACCTCACCTGCTCGGCACCTCCATCAGCAACACTGACA
AGACAGCAGCAGGTCACATCCGCGCCATGCTTCAGAAGTGCTGTCCCCCG
ATTCTCAGGCAAATGCGCTCAGCGCCAGATACAGCGGAGGACTACAAGAA
CGACTTTGGCTTCCTGGGGCCGTCGCTGTGCCAGGCAGTAGTCAAAGTTC
GAAATGCGCCCGCCTCAAGCATTGTAACCCTGTCATCCAACACTATCAAC
ACGGCACCCATCACGAGTGCAGCACAAACAGCAACAACCATCGGACGAGT
GTCCATGCCCACCACACAGAGACAGGGAAGTCCCGGAGTCTCGTCCCTGC
CGCAAATAAGAGCCATTCAGGCCAACCAGCCGGCGCAAAAGTTTGTGATA
GTCACCCAGAACTCGCCGCAGCAGGGCCAGGCGAAGGTGGTGCGGCGTGG
CAGCTCTCCGCACAGCGTGGTCCTCTCCGCGGCCTCCAACGCTGCCAGTG
CCTCCAATTCGAACTCAAGCTCGAGCGGCAGTCTACTAGCGGCTGCACAG
CGGAGCAGCGATAATGTGTGTGTTATTGCCGGTAGCGAAGCGCCAGCAGT
TGATGGTATAACAGTTCAATCTTTCAGAGCATCCGCAAGCTTTCTAGACC
AT

BO05089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 1821 CG32211-PA 1..1818 17..1834 9090 100 Plus
Taf6-RB 1818 CG32211-PB 1..1815 17..1834 9010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RA 2056 CG32211-RA 73..1890 17..1834 9090 100 Plus
Taf6-RB 2053 CG32211-RB 73..1887 17..1834 9010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599160..19600044 17..901 4425 100 Plus
3L 28110227 3L 19600333..19600789 1071..1527 2285 100 Plus
3L 28110227 3L 19600909..19601216 1527..1834 1540 100 Plus
3L 28110227 3L 19600103..19600276 898..1071 855 99.4 Plus
Blast to na_te.dros performed 2014-11-28 00:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 174..132 116 74.4 Minus

BO05089.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:51 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 1..1821 17..1835 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:56 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 71..1891 14..1834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:56 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 73..1890 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:51 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 71..1891 14..1834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:23 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 73..1890 17..1836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:23 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19599160..19600044 17..901 100 -> Plus
3L 19600107..19600276 902..1071 100 -> Plus
3L 19600334..19600789 1072..1527 100 -> Plus
3L 19600910..19601216 1528..1836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:56 Download gff for BO05089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592260..19593144 17..901 100 -> Plus
arm_3L 19593207..19593376 902..1071 100 -> Plus
arm_3L 19593434..19593889 1072..1527 100 -> Plus
arm_3L 19594010..19594316 1528..1836 99   Plus

BO05089.pep Sequence

Translation from 16 to 1852

> BO05089.pep
MSGKPSKPSSPSSSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDV
SIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAKDFIP
FRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQP
TVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVET
IHVKQLATHELSVEQQLYYKEITEACVGSDEPRRGEALQSLGSDPGLHEM
LPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELI
PSVMTCIVSKQLCMRPELDNHWALRDFASRLMAQICKNFNTLTNNLQTRV
TRIFSKALQNDKTHLSSLYGSIAGLSELGGEVIKVFIIPRLKFISERIEP
HLLGTSISNTDKTAAGHIRAMLQKCCPPILRQMRSAPDTAEDYKNDFGFL
GPSLCQAVVKVRNAPASSIVTLSSNTINTAPITSAAQTATTIGRVSMPTT
QRQGSPGVSSLPQIRAIQANQPAQKFVIVTQNSPQQGQAKVVRRGSSPHS
VVLSAASNAASASNSNSSSSGSLLAAAQRSSDNVCVIAGSEAPAVDGITV
QSFRASASFLDH

BO05089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-PA 606 CG32211-PA 1..606 1..606 3047 100 Plus
Taf6-PB 605 CG32211-PB 1..605 1..606 3031 99.8 Plus
mia-PC 589 CG10390-PC 169..555 198..570 566 34.7 Plus
mia-PB 589 CG10390-PB 169..555 198..570 566 34.7 Plus
mia-PA 589 CG10390-PA 169..555 198..570 566 34.7 Plus