Clone BO05090 Report

Search the DGRC for BO05090

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:50
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31441-RA
Protein status:BO05090.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO05090.3prime Sequence

833 bp (782 high quality bases) assembled on 2005-12-02

> BO05090.3prime
ATGGTCTAGAAAGCTTGCGACAATCCTAGCACTTTCAGCTCTTCGCTGGT
GTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCAC
TGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCTC
ATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGGC
ACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACTG
CTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGGC
GTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTACT
TGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTGC
AGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGTC
ACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCAC
TTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTGC
TCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCATT
CTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCTT
CCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATCC
GTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGAG
TTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCCA
TAAAAGACTTGTGGACCTCCAAGCACTTATTGC

BO05090.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 209..1023 833..19 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RB 1223 CG31441-RB 284..1098 833..19 4075 100 Minus
CG31441-RA 1219 CG31441-RA 280..1094 833..19 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236626..11237340 833..119 3575 100 Minus
3R 32079331 3R 11237400..11237499 118..19 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:16:11 has no hits.

BO05090.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:11 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 209..1026 18..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:46 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 209..1026 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:17 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 280..1094 19..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:50 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 280..1094 19..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:50 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236626..11237340 119..833 100 -> Minus
3R 11237400..11237503 15..118 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:17 Download gff for BO05090.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062348..7063062 119..833 100 -> Minus
arm_3R 7063122..7063225 15..118 97 -> Minus

BO05090.5prime Sequence

872 bp (787 high quality bases) assembled on 2005-12-02

> BO05090.5prime
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
CTTTCAGTGCCAGCATTGCGAC

BO05090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1219 CG31441-RA 72..926 17..872 4255 99.9 Plus
CG31441-RB 1223 CG31441-RB 72..930 17..872 4205 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236550..11237272 149..872 3570 99.9 Plus
3R 32079331 3R 11236357..11236488 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:34:46 has no hits.

BO05090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:11 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:48 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:03 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..926 12..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:26 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..926 12..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:26 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236352..11236488 12..148 98 -> Plus
3R 11236550..11237272 149..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:03 Download gff for BO05090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062074..7062210 12..148 98 -> Plus
arm_3R 7062272..7062994 149..872 99   Plus

BO05090.complete Sequence

1057 bp (1057 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629979

> BO05090.complete
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCA
AAAACATGAGATGCTGCACACTAATCAGCGGAAGTACCACTGCGAGATCT
GTGACCAGTGGTTCCTGCGCTCATCCCATTTGACCCTACATCAAAGCACT
AAATTACACCAGCGAAGAGCTGAAAGTGCTAGGATTGTCGCAAGCTTTCT
AGACCAT

BO05090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1026 CG31441-PA 1..1023 17..1039 5115 100 Plus
CG31441-RB 147 CG31441-PB 1..132 17..148 660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1219 CG31441-RA 72..1094 17..1039 5115 100 Plus
CG31441-RB 1223 CG31441-RB 72..1098 17..1039 5040 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236550..11237340 149..939 3955 100 Plus
3R 32079331 3R 11236357..11236488 17..148 660 100 Plus
3R 32079331 3R 11237400..11237499 940..1039 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:31 has no hits.

BO05090.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:12 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 1..1026 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:34 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1094 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:23 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1094 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:12 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 67..1094 12..1039 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:10 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 72..1094 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:10 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11237400..11237499 940..1041 98   Plus
3R 11236357..11236488 17..148 100 -> Plus
3R 11236550..11237340 149..939 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:23 Download gff for BO05090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062079..7062210 17..148 100 -> Plus
arm_3R 7062272..7063062 149..939 100 -> Plus
arm_3R 7063122..7063221 940..1041 98   Plus

BO05090.pep Sequence

Translation from 16 to 1057

> BO05090.pep
MSELRSICRTCGKNVTNLQGRATKLFNKSNYHFISILENITDMYLEFDTT
LPHLICQCCKVQLDRILTFRNKCLEVHKSFMAANRKLLRKKAIVDEELDK
PDVEKLQQDLWDHTDQEMCVAMADTAGLLREDHNDNEKAKDAEDATQNEK
NQEEQVQVQTEEVEHCQEQLHNMSIISKGVSARVPKRTKRNSKSWFCDQC
GGVFKSSTYLKLHLQRHSGHKPFACDICQAKYYTDNEMRRHRILHTDARP
YACRFCSKTYRGCSSKVVHERTHTNERPFQCQHCDKAFTSTSTRQKHEML
HTNQRKYHCEICDQWFLRSSHLTLHQSTKLHQRRAESARIVASFLDH

BO05090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 341 CG31441-PA 1..341 1..341 1851 100 Plus
M1BP-PA 418 CG9797-PA 6..396 1..340 488 28.5 Plus
CG18764-PA 409 CG18764-PA 5..401 8..337 485 29.3 Plus
ranshi-PA 346 CG9793-PA 5..339 7..338 479 30.1 Plus
CG8159-PB 399 CG8159-PB 2..335 4..338 444 28.5 Plus