Clone Sequence Records
BO05090.3prime Sequence
833 bp (782 high quality bases) assembled on 2005-12-02
> BO05090.3prime
ATGGTCTAGAAAGCTTGCGACAATCCTAGCACTTTCAGCTCTTCGCTGGT
GTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCAC
TGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCTC
ATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGGC
ACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACTG
CTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGGC
GTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTACT
TGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTGC
AGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGTC
ACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCAC
TTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTGC
TCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCATT
CTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCTT
CCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATCC
GTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGAG
TTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCCA
TAAAAGACTTGTGGACCTCCAAGCACTTATTGC
BO05090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 209..1023 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RB | 1223 | CG31441-RB | 284..1098 | 833..19 | 4075 | 100 | Minus |
CG31441-RA | 1219 | CG31441-RA | 280..1094 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236626..11237340 | 833..119 | 3575 | 100 | Minus |
3R | 32079331 | 3R | 11237400..11237499 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:16:11 has no hits.
BO05090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:11 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 209..1026 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:46 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 209..1026 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:17 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 280..1094 | 19..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:50 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 280..1094 | 19..833 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:50 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236626..11237340 | 119..833 | 100 | -> | Minus |
3R | 11237400..11237503 | 15..118 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:17 Download gff for
BO05090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062348..7063062 | 119..833 | 100 | -> | Minus |
arm_3R | 7063122..7063225 | 15..118 | 97 | -> | Minus |
BO05090.5prime Sequence
872 bp (787 high quality bases) assembled on 2005-12-02
> BO05090.5prime
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
CTTTCAGTGCCAGCATTGCGAC
BO05090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1219 | CG31441-RA | 72..926 | 17..872 | 4255 | 99.9 | Plus |
CG31441-RB | 1223 | CG31441-RB | 72..930 | 17..872 | 4205 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236550..11237272 | 149..872 | 3570 | 99.9 | Plus |
3R | 32079331 | 3R | 11236357..11236488 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:34:46 has no hits.
BO05090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:11 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:36:48 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:03 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..926 | 12..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:26 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..926 | 12..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:26 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236352..11236488 | 12..148 | 98 | -> | Plus |
3R | 11236550..11237272 | 149..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:03 Download gff for
BO05090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062074..7062210 | 12..148 | 98 | -> | Plus |
arm_3R | 7062272..7062994 | 149..872 | 99 | | Plus |
BO05090.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629979
> BO05090.complete
GAAGTTATCAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTG
GCAAAAATGTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAA
AGCAACTATCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCT
CGAATTTGACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGC
AGCTGGACAGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAG
TCTTTTATGGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGA
TGAGGAACTCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGG
ACCACACGGATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTT
CTGCGGGAAGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGC
GACTCAGAATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGG
AGGTGGAGCACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAG
GGAGTAAGTGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTG
GTTCTGTGACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAAC
TGCACCTGCAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGC
CAGGCCAAGTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCA
CACGGACGCCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAG
GATGCAGCAGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCC
TTTCAGTGCCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCA
AAAACATGAGATGCTGCACACTAATCAGCGGAAGTACCACTGCGAGATCT
GTGACCAGTGGTTCCTGCGCTCATCCCATTTGACCCTACATCAAAGCACT
AAATTACACCAGCGAAGAGCTGAAAGTGCTAGGATTGTCGCAAGCTTTCT
AGACCAT
BO05090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1026 | CG31441-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG31441-RB | 147 | CG31441-PB | 1..132 | 17..148 | 660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1219 | CG31441-RA | 72..1094 | 17..1039 | 5115 | 100 | Plus |
CG31441-RB | 1223 | CG31441-RB | 72..1098 | 17..1039 | 5040 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236550..11237340 | 149..939 | 3955 | 100 | Plus |
3R | 32079331 | 3R | 11236357..11236488 | 17..148 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11237400..11237499 | 940..1039 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:31 has no hits.
BO05090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:12 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 1..1026 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:34 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1094 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:23 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1094 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:12 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 67..1094 | 12..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:10 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 72..1094 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:10 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11237400..11237499 | 940..1041 | 98 | | Plus |
3R | 11236357..11236488 | 17..148 | 100 | -> | Plus |
3R | 11236550..11237340 | 149..939 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:23 Download gff for
BO05090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062079..7062210 | 17..148 | 100 | -> | Plus |
arm_3R | 7062272..7063062 | 149..939 | 100 | -> | Plus |
arm_3R | 7063122..7063221 | 940..1041 | 98 | | Plus |
BO05090.pep Sequence
Translation from 16 to 1057
> BO05090.pep
MSELRSICRTCGKNVTNLQGRATKLFNKSNYHFISILENITDMYLEFDTT
LPHLICQCCKVQLDRILTFRNKCLEVHKSFMAANRKLLRKKAIVDEELDK
PDVEKLQQDLWDHTDQEMCVAMADTAGLLREDHNDNEKAKDAEDATQNEK
NQEEQVQVQTEEVEHCQEQLHNMSIISKGVSARVPKRTKRNSKSWFCDQC
GGVFKSSTYLKLHLQRHSGHKPFACDICQAKYYTDNEMRRHRILHTDARP
YACRFCSKTYRGCSSKVVHERTHTNERPFQCQHCDKAFTSTSTRQKHEML
HTNQRKYHCEICDQWFLRSSHLTLHQSTKLHQRRAESARIVASFLDH
BO05090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 341 | CG31441-PA | 1..341 | 1..341 | 1851 | 100 | Plus |
M1BP-PA | 418 | CG9797-PA | 6..396 | 1..340 | 488 | 28.5 | Plus |
CG18764-PA | 409 | CG18764-PA | 5..401 | 8..337 | 485 | 29.3 | Plus |
ranshi-PA | 346 | CG9793-PA | 5..339 | 7..338 | 479 | 30.1 | Plus |
CG8159-PB | 399 | CG8159-PB | 2..335 | 4..338 | 444 | 28.5 | Plus |