Clone Sequence Records
BO05106.3prime Sequence
892 bp (856 high quality bases) assembled on 2005-12-02
> BO05106.3prime
ATGGTCTAGAAAGCTTGCACCCACAGTCAGGGCCATGATGGCATTGACCA
CATCGTTGTCGTTCTTCAGCAGCGCCTGGATCGCCTTTTTGCGCGAGCAC
GCGGCCTGCATCTGTACCAGTTCGATGTCCTTCGCATGTAGGCCCATGGC
ATCCGCGTCCTCGCCATCGTTCTCGTCGTCGTCGTCGTCGTGTGGGGACT
CCTCGCCAGGGGCTTTTCCATCCTCGTTACCTTGCCGCCCGGCAGGCGAG
GTTCCACGGAATCGCTCGGCCGCCTTGACAGCTGCCTGGGAGGCGACGGA
CGTGGTGCTAGTGTCCTCCACGCAGATCTCCCCAAAGAAGATGTACGTCG
ACGAGTGCGCCACTCTGTAGACGTCCGGCTGATCGATGTACAAGAGGATG
TTCTTGCCCTTCTTCATGGTCACTCGGGCCACGTTCTCCATGGGCTTCAG
GTCCAGCTTCATGAGGATCCGGCGTGCCTTCCGCTCGCCGCGAGACTGCT
TTGATACCTCACGTGTTCGCACGGCCACCGTACCGAGTTGACCCTGCTCG
TCCGGTTGGGTCTCCTTGGGATCCGCTTCCACGAGATCCGGGGCGTCATC
GGAGTCCGTGCTCTGATCATCCTCAACTACGCAGGATTTCGCGGCGGAGG
CGCCCTCCTCCTTCTGCGAGTTCGGCAGACTGAACACATTGGGCGGCAGC
TGTTTGGCCAGGCTCATCAGCTTCTTGATCTTGTTGCGGTAGGCCGGGTC
CATTTGACCCATGATGTGGGGCTTCCCCTTTGCGCCACTAAAGCCTGCCG
GAGGTTTATTCTTGACATCCAAGGCGTCTTCCGAACTGGAGATCTCCTTC
TGAAGTGCCTTTGCGACGTTTGGTTTTTGCGTTGCCTTGGGC
BO05106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PA | 1044 | CG4415-RA | 168..1041 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 301..1174 | 892..19 | 4370 | 100 | Minus |
| CG4415-RA | 1368 | CG4415-RA | 301..1174 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037546..1038419 | 892..19 | 4370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:46:56 has no hits.
BO05106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:24 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 168..1044 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:07 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 168..1044 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:27 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 301..1183 | 8..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:06 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 301..1183 | 8..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:06 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037546..1038428 | 8..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:27 Download gff for
BO05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037546..1038428 | 8..892 | 99 | | Minus |
BO05106.5prime Sequence
899 bp (799 high quality bases) assembled on 2005-12-02
> BO05106.5prime
GAAGTTATCAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCC
AGATGGCGACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAG
ACCGCTGCCGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTC
TCCCTCACCAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAA
AACCAAACGTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGAC
GCCTTGGATGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGG
GAAGCCCCACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCA
AGAAGCTGATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTG
CCGAACTCGCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGT
TGAGGATGATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAG
CGGATCCCAAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTG
GCCGTGCGAACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGC
ACGCCGGATCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCC
GAGTGACCATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCG
GACGTCTACAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGAT
CTGCGTGGAGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCA
AGGCGGCCGAGCGATTCCGTGGAACCTCGCCTGCCGGGCGGCAAGGTAAC
GAGGATGGAAAAGCCCCTGGCGAGAAGTCCCCACACGACGACGACGACG
BO05106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PA | 1044 | CG4415-RA | 1..883 | 17..899 | 4390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 134..1016 | 17..899 | 4400 | 99.9 | Plus |
| CG4415-RA | 1368 | CG4415-RA | 134..1016 | 17..899 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037379..1038261 | 17..899 | 4400 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:30:21 has no hits.
BO05106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:25 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:08 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:46 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 126..1016 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:03:06 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 126..1016 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:03:06 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037371..1038261 | 8..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:46 Download gff for
BO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037371..1038261 | 8..899 | 99 | | Plus |
BO05106.complete Sequence
1075 bp (1075 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629980
> BO05106.complete
GAAGTTATCAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCC
AGATGGCGACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAG
ACCGCTGCCGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTC
TCCCTCACCAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAA
AACCAAACGTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGAC
GCCTTGGATGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGG
GAAGCCCCACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCA
AGAAGCTGATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTG
CCGAACTCGCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGT
TGAGGATGATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAG
CGGATCCCAAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTG
GCCGTGCGAACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGC
ACGCCGGATCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCC
GAGTGACCATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCG
GACGTCTACAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGAT
CTGCGTGGAGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCA
AGGCGGCCGAGCGATTCCGTGGAACCTCGCCTGCCGGGCGGCAAGGTAAC
GAGGATGGAAAAGCCCCTGGCGAGGAGTCCCCACACGACGACGACGACGA
CGAGAACGATGGCGAGGACGCGGATGCCATGGGCCTACATGCGAAGGACA
TCGAACTGGTACAGATGCAGGCCGCGTGCTCGCGCAAAAAGGCGATCCAG
GCGCTGCTGAAGAACGACAACGATGTGGTCAATGCCATCATGGCCCTGAC
TGTGGGTGCAAGCTTTCTAGACCAT
BO05106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1044 | CG4415-PB | 1..1041 | 17..1057 | 5205 | 100 | Plus |
| CG4415-RA | 1044 | CG4415-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 134..1174 | 17..1057 | 5205 | 100 | Plus |
| CG4415-RA | 1368 | CG4415-RA | 134..1174 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037379..1038419 | 17..1057 | 5205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:36:25 has no hits.
BO05106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:13 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 1..1044 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:08 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 137..1194 | 8..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:06 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 134..1174 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:14 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 137..1194 | 8..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:31 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 134..1174 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:31 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037379..1038419 | 17..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:06 Download gff for
BO05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037379..1038419 | 17..1059 | 99 | | Plus |
BO05106.pep Sequence
Translation from 16 to 1075
> BO05106.pep
MGKKQKMKKAAQMATAAEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSG
SGKKGKPKATQKPNVAKALQKEISSSEDALDVKNKPPAGFSGAKGKPHIM
GQMDPAYRNKIKKLMSLAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQS
TDSDDAPDLVEADPKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILM
KLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDT
STTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGE
DADAMGLHAKDIELVQMQAACSRKKAIQALLKNDNDVVNAIMALTVGASF
LDH
BO05106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PB | 347 | CG4415-PB | 1..347 | 1..347 | 1752 | 100 | Plus |
| CG4415-PA | 347 | CG4415-PA | 1..347 | 1..347 | 1752 | 100 | Plus |
| Nacalpha-PD | 217 | CG8759-PD | 26..216 | 145..346 | 350 | 45.1 | Plus |
| Nacalpha-PA | 217 | CG8759-PA | 26..216 | 145..346 | 350 | 45.1 | Plus |
| Nacalpha-PC | 217 | CG8759-PC | 26..216 | 145..346 | 350 | 45.1 | Plus |
