Clone Sequence Records
BO05111.3prime Sequence
906 bp (826 high quality bases) assembled on 2005-12-02
> BO05111.3prime
ATGGTCTAGAAAGCTTGCAGTGCTGCACTTCCGTTTGAAGTTCACGTGCA
GAGAAGTGGGTGCAGTTGCTCCGGATGAGGGCGGCGATTGGGTATCTGAA
GCGGAGGGCGTGGCCTTATTTTGAATGGGACTCGTGGTGCTCTTATTGAT
GCTCTGAACAATCAGATTTAGACAGTCCAAACTGGAGCCATTGGCATTGC
CATCAAAGTCATATTTCTCCATATGTTTGTTGTAAAAACTAAGTTTATCT
TCTAGATAAGCGCCAGCATAGGAGCTCAGATAATCGGACTGGCAGCTTTT
GCCGCTCAAACTGGGCGCCAGGTTGTCGCCATCGCGTGTGGTACTGGATT
CCTGTAGCAGATCCTCCAGGCTCTCGATATACTCGATGGCATTGCGCAAT
ATCTCAACCTTCGGCAGGCGCTGGTTGGGATTGGATGAAGTGCGTCGCTT
GAGGATCTCGAAGGCCTCGTTAACCTTTCGCAGTCTCCGGCGTTCCCTCA
TAGTGGCCGCTTTCCGACGGTCCACGGTGACGCTCTTCTTTTTGCACGCC
TTGCAGGCCCAGGTGAGGCATGGTCTGGAGGATTGGGCGGAGGAGCAGAC
GAGGGGCGCCAGGACGTGCTCCTCGGAGCTGAGACTGCTGTTCTCGTCAT
CGTAGTCGGTGGTGTAGATGGGCGACGGTGTCATATTCATGCCCAATGGC
TTGTCCAGCTCAACCGGATTATGATTCGCATGACTGTAGTTGCAAGACGA
ACCCGATCCGTTGGCTGAGATGGAAGCCGCTCCACCATTTCCCGCACTCG
CATCACCGACGGCATTGAAGCGGCTAAAGAATTCTGCAGTGTCTGGTGTG
GATTCTGGCCGGGATGGGCTATCGGATTCTGTTGGCTATAGGCGCTTAAT
CCGTAT
BO05111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10250-PA | 999 | nau-RA | 172..793 | 831..210 | 3110 | 100 | Minus |
| CG10250-PA | 999 | nau-RA | 805..996 | 210..19 | 960 | 100 | Minus |
| CG10250-PA | 999 | nau-RA | 96..172 | 906..830 | 360 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 1520 | CG10250-RB | 497..1385 | 906..19 | 4405 | 99.8 | Minus |
| nau-RA | 1532 | CG10250-RA | 497..1397 | 906..19 | 4275 | 98.4 | Minus |
| CG10300-RA | 1484 | CG10300-RA | 1120..1311 | 19..210 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23717427..23717861 | 473..906 | 2110 | 99.5 | Plus |
| 3R | 32079331 | 3R | 23712949..23713140 | 19..210 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 23716500..23716625 | 351..476 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 23716363..23716439 | 277..353 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 23713208..23713275 | 210..277 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:38:47 has no hits.
BO05111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:29 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-PA | 96..999 | 18..906 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:16 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10250-PA | 96..999 | 18..906 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:21 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 497..1389 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:01 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 497..1389 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:01 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23712945..23713139 | 13..209 | 98 | <- | Plus |
| 3R | 23713208..23713274 | 210..276 | 100 | <- | Plus |
| 3R | 23716363..23716437 | 277..351 | 100 | <- | Plus |
| 3R | 23716501..23716623 | 352..474 | 100 | <- | Plus |
| 3R | 23717429..23717861 | 475..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:21 Download gff for
BO05111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19542085..19542159 | 277..351 | 100 | <- | Plus |
| arm_3R | 19542223..19542345 | 352..474 | 100 | <- | Plus |
| arm_3R | 19538667..19538861 | 13..209 | 98 | <- | Plus |
| arm_3R | 19538930..19538996 | 210..276 | 100 | <- | Plus |
| arm_3R | 19543151..19543583 | 475..906 | 99 | | Plus |
BO05111.5prime Sequence
856 bp (767 high quality bases) assembled on 2005-12-02
> BO05111.5prime
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTACAACAAACATATGG
AGAAATATGACTTTGATGGGAATGCCCATGGCTCCAGTTTGGACTGTCTA
AATCTG
BO05111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10250-PA | 999 | nau-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG10250-PA | 999 | nau-RA | 805..852 | 809..856 | 190 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 1520 | CG10250-RB | 402..1241 | 17..856 | 4170 | 99.8 | Plus |
| nau-RA | 1532 | CG10250-RA | 402..1253 | 17..856 | 4040 | 98.4 | Plus |
| CG10300-RA | 1484 | CG10300-RA | 1379..1446 | 809..742 | 340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23717427..23717956 | 546..17 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 23716500..23716625 | 668..543 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 23716363..23716439 | 742..666 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 23713208..23713275 | 809..742 | 340 | 100 | Minus |
| 3R | 32079331 | 3R | 23713093..23713140 | 856..809 | 210 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:44 has no hits.
BO05111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:30 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-PA | 1..852 | 17..856 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:17 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10250-PA | 1..852 | 17..856 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:25 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1241 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:02 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1241 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:02 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23713093..23713139 | 810..856 | 95 | <- | Minus |
| 3R | 23713208..23713274 | 743..809 | 100 | <- | Minus |
| 3R | 23716363..23716437 | 668..742 | 100 | <- | Minus |
| 3R | 23716501..23716623 | 545..667 | 100 | <- | Minus |
| 3R | 23717429..23717964 | 10..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:25 Download gff for
BO05111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19538815..19538861 | 810..856 | 95 | <- | Minus |
| arm_3R | 19538930..19538996 | 743..809 | 100 | <- | Minus |
| arm_3R | 19542085..19542159 | 668..742 | 100 | <- | Minus |
| arm_3R | 19542223..19542345 | 545..667 | 100 | <- | Minus |
| arm_3R | 19543151..19543686 | 10..544 | 99 | | Minus |
BO05111.complete Sequence
1018 bp (1018 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629981
> BO05111.complete
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTACAACAAACATATGG
AGAAATATGACTTTGATGGCAATGCCAATGGCTCCAGTTTGGACTGTCTA
AATCTGATTGTTCAGAGCATCAATAAGAGCACCACGAGTCCCATTCAAAA
TAAGGCCACGCCCTCCGCTTCAGATACCCAATCGCCGCCCTCATCCGGAG
CAACTGCACCCACTTCTCTGCACGTGAACTTCAAACGGAAGTGCAGCACT
GCAAGCTTTCTAGACCAT
BO05111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 987 | CG10250-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| nau-RA | 999 | CG10250-PA | 1..996 | 17..1000 | 4765 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 1520 | CG10250-RB | 402..1385 | 17..1000 | 4920 | 100 | Plus |
| nau-RA | 1532 | CG10250-RA | 402..1397 | 17..1000 | 4765 | 98.8 | Plus |
| CG10300-RA | 1484 | CG10300-RA | 1120..1311 | 1000..809 | 960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23717427..23717956 | 546..17 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 23712949..23713140 | 1000..809 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 23716500..23716625 | 668..543 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 23716363..23716439 | 742..666 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 23713208..23713275 | 809..742 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:01:27 has no hits.
BO05111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:36:16 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RA | 1..999 | 17..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:04:12 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RA | 394..1401 | 10..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:09 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 402..1385 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:36:16 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RA | 394..1401 | 10..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:01 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 402..1385 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:01 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23712945..23713139 | 810..1002 | 98 | <- | Minus |
| 3R | 23713208..23713274 | 743..809 | 100 | <- | Minus |
| 3R | 23716363..23716437 | 668..742 | 100 | <- | Minus |
| 3R | 23716501..23716623 | 545..667 | 100 | <- | Minus |
| 3R | 23717429..23717956 | 17..544 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:09 Download gff for
BO05111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19538667..19538861 | 810..1002 | 98 | <- | Minus |
| arm_3R | 19538930..19538996 | 743..809 | 100 | <- | Minus |
| arm_3R | 19542085..19542159 | 668..742 | 100 | <- | Minus |
| arm_3R | 19542223..19542345 | 545..667 | 100 | <- | Minus |
| arm_3R | 19543151..19543678 | 17..544 | 100 | | Minus |
BO05111.pep Sequence
Translation from 16 to 1018
> BO05111.pep
MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQN
PHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHNPVELD
KPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWAC
KACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVE
ILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYL
EDKLSFYNKHMEKYDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPS
ASDTQSPPSSGATAPTSLHVNFKRKCSTASFLDH
BO05111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-PB | 328 | CG10250-PB | 1..328 | 1..328 | 1722 | 100 | Plus |
| nau-PA | 332 | CG10250-PA | 1..332 | 1..328 | 1707 | 98.8 | Plus |
