Clone BO05116 Report

Search the DGRC for BO05116

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG11085-RA
Protein status:BO05116.pep: Imported from assembly
Sequenced Size:919

Clone Sequence Records

BO05116.3prime Sequence

889 bp (815 high quality bases) assembled on 2005-12-02

> BO05116.3prime
ATGGTCTAGAAAGCTTGCCATGGGACATCCGCGGACATAGCCGACATTAC
GGAAAATGGCCGCCGCTGCGGCGGAAGTGAGAAAATTGCAAGGATTGCTG
GCAGCCGCTGCAGCAGCGGCGGCGGCACTAAAAGAACTGCTCAGTCCGCT
GGGACAGCAGCCGAGTCCGCCCGCACCGCCGCCATCCTGGACCACAAAAT
CCTTCTCCATGGTCGCCTGATGACGCAGCTGCTCCAGACGCAGTTGATTC
TGTCGCTTCCATTTGGTCCGGCGATTCTGGTACCAGGTTTTCACCTGCGT
CTCGGACAGATTGAGCGTTTCGGCCACATCGCTGCGATCGGCCACGCTCA
GGTACTTCTGGCACCGGAACTTCCGCTCCAAGTAGGCGAGCTGGGCGTGG
GTGAAGGCGGTTCGGCGGCGTCGCGGCTTCCGGCCACTTTTGCTCAGCTG
CAGCTTGTGCTCCGCATAGCCGCCACTTGTACCGCCACCGGATCCCGGGC
CACTGCCACCGTTGGCATCCCGATCCCCATTGGCACCACTGGCCGCCGCT
GCCAGGAGTCCAGCAGCCACGCCCGCCGCCGCTGCAGCGGCGCTCAGTCC
GCTGGCTACTCCTCCTCCACCACCACCACCTCCGCCACCACCCGATCCTG
TGCCAGAGCCGGGGCCCCTTGTGGCCGATAGGCAGGACTCCACACTGGAT
TCGTCGTGGTGGGTGAATCTGCGGTGATGGTGCGACAGCAGTAGCTCCTG
CTGGCAGCCCGCAGCCGTCGAGTCCGGCGTAGATCGATCCTCAATGTCTA
TATCCGAATCGTCGTTGGAGAGCTCCAGTTCCGAATCTGTTTGTCGTCGA
TTAATCAAATCGCCCAGAAGATCGCGTATTAAAAAAGAT

BO05116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 828 CG11085-RA 13..825 831..19 4040 99.8 Minus
CG5488-PA 1938 B-H2-RA 1267..1310 297..254 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 376..1246 889..19 4340 99.9 Minus
B-H2-RB 3142 CG5488-RB 1533..1644 360..249 200 78.6 Minus
B-H2-RA 3102 CG5488-RA 1493..1604 360..249 200 78.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 831..268 2820 100 Minus
X 23542271 X 12620668..12620918 269..19 1240 99.6 Minus
X 23542271 X 12616691..12616749 889..831 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:16:21 has no hits.

BO05116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:40 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..828 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:30 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..828 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:36 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 376..1246 19..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:41 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 376..1246 19..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:41 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12616691..12616749 831..889 100 -> Minus
X 12619652..12620213 269..830 100 -> Minus
X 12620669..12620918 19..268 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:36 Download gff for BO05116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12510724..12510782 831..889 100 -> Minus
arm_X 12513685..12514246 269..830 100 -> Minus
arm_X 12514702..12514951 19..268 99   Minus

BO05116.5prime Sequence

811 bp (757 high quality bases) assembled on 2005-09-08

> BO05116.5prime
CAGTCGACATGCACAGCTCAAAATCTTTTTTAATACGCGATCTTCTGGGC
GATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTCTCCAACGA
CGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTCGACGGCTG
CGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCAGATTCACC
CACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACAAGGGGCCC
CGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGGTGGAGGAG
GAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCGTGGCTGCT
GGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGGGATGCCAA
CGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGGCTATGCGG
AGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGACGCCGCCGA
ACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAGTTCCGGTG
CCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGAAACGCTCA
ATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCCGGACCAAA
TGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCATCAGGCGAC
CATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGGCGGACTCG
GCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCGCCGCTGCT
GCAGCGGCTGC

BO05116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 828 CG11085-RA 13..743 81..811 3655 100 Plus
CG5488-PA 1938 B-H2-RA 1267..1310 615..658 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 362..1164 9..811 4000 99.9 Plus
B-H2-RB 3142 CG5488-RB 1533..1644 552..663 200 78.6 Plus
B-H2-RA 3102 CG5488-RA 1493..1604 552..663 200 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 81..644 2820 100 Plus
X 23542271 X 12620668..12620836 643..811 845 100 Plus
X 23542271 X 12616677..12616749 9..81 350 98.6 Plus
Blast to na_te.dros performed on 2015-02-09 18:45:39 has no hits.

BO05116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:41 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..743 81..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:31 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..743 81..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:55 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1164 1..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:26 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1164 1..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:26 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12616670..12616749 1..81 95 -> Plus
X 12619652..12620213 82..643 100 -> Plus
X 12620669..12620836 644..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:55 Download gff for BO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12510703..12510782 1..81 95 -> Plus
arm_X 12513685..12514246 82..643 100 -> Plus
arm_X 12514702..12514869 644..811 100   Plus

BO05116.complete Sequence

919 bp assembled on 2010-01-14

GenBank Submission: KX798840

> BO05116.complete
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGG
CGGACTCGGCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCG
CCGCTGCTGCAGCGGCTGCCAGCAATCCTTGCAATTTTCTCACTTCCGCC
GCAGCGGCGGCCATTTTCCGTAATGTCGGCTATGTCCACGGATGTCCCAT
GGCAAGCTTTCTAGACCAT

BO05116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 888 CG11085-PA 1..885 17..901 4425 100 Plus
B-H2-RB 912 CG5488-PB 178..289 560..671 200 78.6 Plus
B-H2-RA 1938 CG5488-PA 1204..1315 560..671 200 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 362..1246 17..901 4425 100 Plus
B-H2-RB 3142 CG5488-RB 1533..1644 560..671 200 78.6 Plus
B-H2-RA 3102 CG5488-RA 1493..1604 560..671 200 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 89..652 2820 100 Plus
X 23542271 X 12620668..12620918 651..901 1255 100 Plus
X 23542271 X 12616677..12616749 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:51:45 has no hits.

BO05116.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:16 Download gff for BO05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 362..1246 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:30 Download gff for BO05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 362..1246 17..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:47 Download gff for BO05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 362..1246 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:47 Download gff for BO05116.complete
Subject Subject Range Query Range Percent Splice Strand
X 12620669..12620918 652..903 99   Plus
X 12616677..12616749 17..89 100 -> Plus
X 12619652..12620213 90..651 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:30 Download gff for BO05116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12510710..12510782 17..89 100 -> Plus
arm_X 12513685..12514246 90..651 100 -> Plus
arm_X 12514702..12514951 652..903 99   Plus

BO05116.pep Sequence

Translation from 16 to 919

> BO05116.pep
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPMASFLD
H

BO05116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 295 CG11085-PA 1..295 1..295 1527 100 Plus
B-H2-PA 645 CG5488-PA 293..501 65..283 266 37.1 Plus
B-H1-PA 544 CG5529-PA 210..424 104..289 258 35.8 Plus
B-H2-PB 303 CG5488-PB 4..159 124..283 245 42.4 Plus
slou-PA 659 CG6534-PA 523..631 122..254 244 42.9 Plus