Clone Sequence Records
BO05116.3prime Sequence
889 bp (815 high quality bases) assembled on 2005-12-02
> BO05116.3prime
ATGGTCTAGAAAGCTTGCCATGGGACATCCGCGGACATAGCCGACATTAC
GGAAAATGGCCGCCGCTGCGGCGGAAGTGAGAAAATTGCAAGGATTGCTG
GCAGCCGCTGCAGCAGCGGCGGCGGCACTAAAAGAACTGCTCAGTCCGCT
GGGACAGCAGCCGAGTCCGCCCGCACCGCCGCCATCCTGGACCACAAAAT
CCTTCTCCATGGTCGCCTGATGACGCAGCTGCTCCAGACGCAGTTGATTC
TGTCGCTTCCATTTGGTCCGGCGATTCTGGTACCAGGTTTTCACCTGCGT
CTCGGACAGATTGAGCGTTTCGGCCACATCGCTGCGATCGGCCACGCTCA
GGTACTTCTGGCACCGGAACTTCCGCTCCAAGTAGGCGAGCTGGGCGTGG
GTGAAGGCGGTTCGGCGGCGTCGCGGCTTCCGGCCACTTTTGCTCAGCTG
CAGCTTGTGCTCCGCATAGCCGCCACTTGTACCGCCACCGGATCCCGGGC
CACTGCCACCGTTGGCATCCCGATCCCCATTGGCACCACTGGCCGCCGCT
GCCAGGAGTCCAGCAGCCACGCCCGCCGCCGCTGCAGCGGCGCTCAGTCC
GCTGGCTACTCCTCCTCCACCACCACCACCTCCGCCACCACCCGATCCTG
TGCCAGAGCCGGGGCCCCTTGTGGCCGATAGGCAGGACTCCACACTGGAT
TCGTCGTGGTGGGTGAATCTGCGGTGATGGTGCGACAGCAGTAGCTCCTG
CTGGCAGCCCGCAGCCGTCGAGTCCGGCGTAGATCGATCCTCAATGTCTA
TATCCGAATCGTCGTTGGAGAGCTCCAGTTCCGAATCTGTTTGTCGTCGA
TTAATCAAATCGCCCAGAAGATCGCGTATTAAAAAAGAT
BO05116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 828 | CG11085-RA | 13..825 | 831..19 | 4040 | 99.8 | Minus |
CG5488-PA | 1938 | B-H2-RA | 1267..1310 | 297..254 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 376..1246 | 889..19 | 4340 | 99.9 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 360..249 | 200 | 78.6 | Minus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 360..249 | 200 | 78.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619651..12620214 | 831..268 | 2820 | 100 | Minus |
X | 23542271 | X | 12620668..12620918 | 269..19 | 1240 | 99.6 | Minus |
X | 23542271 | X | 12616691..12616749 | 889..831 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:16:21 has no hits.
BO05116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:40 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..828 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:30 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..828 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:36 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 376..1246 | 19..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:41 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 376..1246 | 19..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:41 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12616691..12616749 | 831..889 | 100 | -> | Minus |
X | 12619652..12620213 | 269..830 | 100 | -> | Minus |
X | 12620669..12620918 | 19..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:36 Download gff for
BO05116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12510724..12510782 | 831..889 | 100 | -> | Minus |
arm_X | 12513685..12514246 | 269..830 | 100 | -> | Minus |
arm_X | 12514702..12514951 | 19..268 | 99 | | Minus |
BO05116.5prime Sequence
811 bp (757 high quality bases) assembled on 2005-09-08
> BO05116.5prime
CAGTCGACATGCACAGCTCAAAATCTTTTTTAATACGCGATCTTCTGGGC
GATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTCTCCAACGA
CGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTCGACGGCTG
CGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCAGATTCACC
CACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACAAGGGGCCC
CGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGGTGGAGGAG
GAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCGTGGCTGCT
GGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGGGATGCCAA
CGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGGCTATGCGG
AGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGACGCCGCCGA
ACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAGTTCCGGTG
CCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGAAACGCTCA
ATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCCGGACCAAA
TGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCATCAGGCGAC
CATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGGCGGACTCG
GCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCGCCGCTGCT
GCAGCGGCTGC
BO05116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 828 | CG11085-RA | 13..743 | 81..811 | 3655 | 100 | Plus |
CG5488-PA | 1938 | B-H2-RA | 1267..1310 | 615..658 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 362..1164 | 9..811 | 4000 | 99.9 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 552..663 | 200 | 78.6 | Plus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 552..663 | 200 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619651..12620214 | 81..644 | 2820 | 100 | Plus |
X | 23542271 | X | 12620668..12620836 | 643..811 | 845 | 100 | Plus |
X | 23542271 | X | 12616677..12616749 | 9..81 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:45:39 has no hits.
BO05116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:41 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..743 | 81..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:31 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..743 | 81..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:55 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1164 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:26 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1164 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:26 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12616670..12616749 | 1..81 | 95 | -> | Plus |
X | 12619652..12620213 | 82..643 | 100 | -> | Plus |
X | 12620669..12620836 | 644..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:55 Download gff for
BO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12510703..12510782 | 1..81 | 95 | -> | Plus |
arm_X | 12513685..12514246 | 82..643 | 100 | -> | Plus |
arm_X | 12514702..12514869 | 644..811 | 100 | | Plus |
BO05116.complete Sequence
919 bp assembled on 2010-01-14
GenBank Submission: KX798840
> BO05116.complete
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGG
CGGACTCGGCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCG
CCGCTGCTGCAGCGGCTGCCAGCAATCCTTGCAATTTTCTCACTTCCGCC
GCAGCGGCGGCCATTTTCCGTAATGTCGGCTATGTCCACGGATGTCCCAT
GGCAAGCTTTCTAGACCAT
BO05116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 888 | CG11085-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
B-H2-RB | 912 | CG5488-PB | 178..289 | 560..671 | 200 | 78.6 | Plus |
B-H2-RA | 1938 | CG5488-PA | 1204..1315 | 560..671 | 200 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 362..1246 | 17..901 | 4425 | 100 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 560..671 | 200 | 78.6 | Plus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 560..671 | 200 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619651..12620214 | 89..652 | 2820 | 100 | Plus |
X | 23542271 | X | 12620668..12620918 | 651..901 | 1255 | 100 | Plus |
X | 23542271 | X | 12616677..12616749 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:51:45 has no hits.
BO05116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:16 Download gff for
BO05116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 362..1246 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:30 Download gff for
BO05116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 362..1246 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:47 Download gff for
BO05116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 362..1246 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:47 Download gff for
BO05116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12620669..12620918 | 652..903 | 99 | | Plus |
X | 12616677..12616749 | 17..89 | 100 | -> | Plus |
X | 12619652..12620213 | 90..651 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:30 Download gff for
BO05116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12510710..12510782 | 17..89 | 100 | -> | Plus |
arm_X | 12513685..12514246 | 90..651 | 100 | -> | Plus |
arm_X | 12514702..12514951 | 652..903 | 99 | | Plus |
BO05116.pep Sequence
Translation from 16 to 919
> BO05116.pep
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPMASFLD
H
BO05116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 295 | CG11085-PA | 1..295 | 1..295 | 1527 | 100 | Plus |
B-H2-PA | 645 | CG5488-PA | 293..501 | 65..283 | 266 | 37.1 | Plus |
B-H1-PA | 544 | CG5529-PA | 210..424 | 104..289 | 258 | 35.8 | Plus |
B-H2-PB | 303 | CG5488-PB | 4..159 | 124..283 | 245 | 42.4 | Plus |
slou-PA | 659 | CG6534-PA | 523..631 | 122..254 | 244 | 42.9 | Plus |