Clone BO05128 Report

Search the DGRC for BO05128

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptVsx2-RA
Protein status:BO05128.pep: validated full length
Sequenced Size:1954

Clone Sequence Records

BO05128.3prime Sequence

874 bp (763 high quality bases) assembled on 2005-12-02

> BO05128.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCTCATAGTTTTTCATTGAACCCCCAT
TGGCGGTCAGCTCCATTTTCACATTGACTTGCGTATTGACAGTCGAGTGG
GCGGGTGGAATGGGAATCGGGCTGTTGTTGTTGTGCTCCTCGCTGAGCTT
GAGCATATCACTTGGGTCCTGGATCTGCGCCTGACCCTGGGCGAACCGAC
GCACCTGCAGGAAGAGCCCACCGTTGTTCAGGAGTCGTGCCTGGTGCTCC
TGCGCCTTGGCCCTCAAACAGGCGATTGAGTTGTTTCTGAAGGCATCCGG
ATCGTGTTCCATGAGGGCGGCAGCCAAGTTGTGGGCATGCAGTCCAGGTG
CTGTCGCCGTGGCCTGCTGCTGCTGCTGTTGCTGTTGCTGATGTTGCTGC
TGAGCAGCTGCTGCTGCCGCTGCCACGGCGGTGTTCATGATCATGTGGAA
GTCCTTGCTGGAGGCGGCCGCGCCGGCACCAGCGGCATTGGCGGCGTCCA
GCAGCGGATGATAGCTGGGCGGGGCACAGCCAGTAACCACCGCGCCAGCG
CCCAAGTAGAGCGACGCCTGTTGCTGTTGCTGCTGCTGCAGTTGCAGGTG
CTGCTGCTGCTGCGGCGAAGGTGAGCCCAGCTCGATGTGGGGACTGCTGG
AGCTGTTGGTGGTCGACGCTCCTGTGGGTGTGGTGGCCGCCGAGGAGGCG
GCTCCCGCATAGCCGCTCGTCGAGGTGGGCGGCGCCGAGGTTGAGGCGGA
GGTGGGGCAGCTACTGGGCGCAGGACTGACGACGTTCAGTGATTCGGTGG
AGGAGCTGAGGGCGTGGCAGCGGGAGCGTGAAAGATCCTCCGAGTGGGCC
GACTTCGATCCCGCCGAGTCCTCG

BO05128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33980-PA 1923 CG33980-RA 1065..1920 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx2-RB 2373 CG33980-RB 1301..2156 874..19 4280 100 Minus
Vsx2-RA 2358 CG33980-RA 1286..2141 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5529495..5530082 287..874 2940 100 Plus
X 23542271 X 5529144..5529414 19..289 1355 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:45:49 has no hits.

BO05128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:57 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33980-PA 1065..1923 15..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:53 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33980-PA 1065..1923 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:00:56 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 1286..2144 15..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:28 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 1286..2144 15..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:28 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5529141..5529411 15..286 99 <- Plus
X 5529495..5530082 287..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:00:56 Download gff for BO05128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5423174..5423444 15..286 99 <- Plus
arm_X 5423528..5424115 287..874 100   Plus

BO05128.5prime Sequence

960 bp (811 high quality bases) assembled on 2005-12-02

> BO05128.5prime
GAAGTTATCAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGC
TGCTGGGCTTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACG
ACAACTGCCGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCC
AAAGACAACAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGG
CAGCAACACCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAG
CCACAGCAGCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCC
GCACCACCATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCT
CGCGAATGGCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATG
CCCCACCAACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCA
GCACCATCCACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGC
CACCGCCGCCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCAC
CCGCTGCTGCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGG
AGCCGGAACTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGG
AGAGCTTGAATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAG
AAGCGACGACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACT
GGAGGAGGCCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAA
TGCTCTCGCTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGTTC
CAAAACCGACGCCGCAAGTGGCGCAAGACGGAGAAAGTCTGGGGCGGCAG
CACGATCATGGCCGAGTACGGTCTCTATGGGGCAATGGTGCGGCACTCGC
TGCCTCTGCC

BO05128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33980-PA 1923 CG33980-RA 1..944 17..960 4670 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx2-RB 2373 CG33980-RB 222..1165 17..960 4690 99.8 Plus
Vsx2-RA 2358 CG33980-RA 222..1165 17..960 4690 99.8 Plus
Vsx1-RB 3633 CG4136-RB 1460..1731 689..960 475 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5559409..5559962 570..17 2770 100 Minus
X 23542271 X 5546722..5546946 844..620 1125 100 Minus
X 23542271 X 5531326..5531447 960..839 580 98.4 Minus
X 23542271 X 5553454..5553506 621..569 265 100 Minus
X 23542271 X 5606708..5606863 689..844 255 77.6 Plus
X 23542271 X 5610842..5610963 839..960 250 80.3 Plus
Blast to na_te.dros performed 2015-02-13 02:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2665 121..468 350 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2544 57..308 340 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6882 158..330 309 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6916 156..331 298 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6953 99..314 295 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2257..2474 112..331 275 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2467 118..312 248 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2372..2908 68..588 245 52.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2605..3026 136..568 236 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..3018 141..359 221 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2950 146..338 218 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..7201 68..475 217 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6526..6900 166..561 212 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2549 102..288 211 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2957 156..331 201 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..7009 62..331 190 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1485..1586 122..224 187 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2520 68..237 181 59.2 Plus
roo 9092 roo DM_ROO 9092bp 1106..1153 168..215 177 85.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..7018 62..330 165 58.1 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 972..1031 156..214 144 73.3 Plus
roo 9092 roo DM_ROO 9092bp 1124..1166 174..216 134 79.1 Plus
TART-A 13424 TART-A 13424bp 10181..10296 175..288 133 63 Plus
roo 9092 roo DM_ROO 9092bp 1030..1119 124..214 129 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1596 141..214 124 64.9 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6597..6757 174..325 123 60.7 Plus
TART-C 11124 TART-C TARTC 11124bp 8053..8213 174..325 123 60.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3238..3348 112..231 121 59.2 Plus
roo 9092 roo DM_ROO 9092bp 1059..1177 103..218 119 58 Plus
TART-C 11124 TART-C TARTC 11124bp 9168..9222 161..214 119 70.9 Plus
BS 5142 BS BS 5142bp 2018..2073 150..205 118 67.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 152..192 174..214 115 75.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9182..9222 174..214 115 75.6 Plus
BS 5142 BS BS 5142bp 2018..2128 99..212 113 57 Plus

BO05128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:17:57 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33980-PA 1..944 17..960 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:54 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33980-PA 1..944 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:14 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 209..1165 5..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:51 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 209..1165 5..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:51 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5531326..5531444 842..960 98 <- Minus
X 5546725..5546945 621..841 100 <- Minus
X 5553455..5553505 570..620 100 <- Minus
X 5559410..5559975 5..569 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:14 Download gff for BO05128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5425359..5425477 842..960 98 <- Minus
arm_X 5440758..5440978 621..841 100 <- Minus
arm_X 5447488..5447538 570..620 100 <- Minus
arm_X 5453443..5454008 5..569 99   Minus

BO05128.complete Sequence

1954 bp (1954 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629982

> BO05128.complete
GAAGTTATCAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGC
TGCTGGGCTTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACG
ACAACTGCCGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCC
AAAGACAACAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGG
CAGCAACACCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAG
CCACAGCAGCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCC
GCACCACCATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCT
CGCGAATGGCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATG
CCCCACCAACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCA
GCACCATCCACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGC
CACCGCCGCCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCAC
CCGCTGCTGCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGG
AGCCGGAACTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGG
AGAGCTTGAATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAG
AAGCGACGACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACT
GGAGGAGGCCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAA
TGCTCTCGCTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGTTC
CAAAACCGACGCGCCAAGTGGCGCAAGACGGAGAAAGTCTGGGGCGGCAG
CACGATCATGGCCGAGTACGGTCTCTATGGGGCAATGGTGCGGCACTCGC
TGCCTCTGCCGGACACGATCCTTAAGTCGGCCAAGGATAACGATGCGGTG
GCGCCCTGGCTACTAGGCATGCATCGCAAGTCGATTGAGGCGCAGTCAGC
GCTCAAGGACGACTCGGGGGTGAGCGACCACGAGGACTCGGCGGGATCGA
AGTCGGCCCACTCGGAGGATCTTTCACGCTCCCGCTGCCACGCCCTCAGC
TCCTCCACCGAATCACTGAACGTCGTCAGTCCTGCGCCCAGTAGCTGCCC
CACCTCCGCCTCAACCTCGGCGCCGCCCACCTCGACGAGCGGCTATGCGG
GAGCCGCCTCCTCGGCGGCCACCACACCCACAGGAGCGTCGACCACCAAC
AGCTCCAGCAGTCCCCACATCGAGCTGGGCTCACCTTCGCCGCAGCAGCA
GCAGCACCTGCAACTGCAGCAGCAGCAACAGCAACAGGCGTCGCTCTACT
TGGGCGCTGGCGCGGTGGTTACTGGCTGTGCCCCGCCCAGCTATCATCCG
CTGCTGGACGCCGCCAATGCCGCTGGTGCCGGCGCGGCCGCCTCCAGCAA
GGACTTCCACATGATCATGAACACCGCCGTGGCAGCGGCAGCAGCAGCTG
CTCAGCAGCAACATCAGCAACAGCAACAGCAGCAGCAGCAGGCCACGGCG
ACAGCACCTGGACTGCATGCCCACAACTTGGCTGCCGCCCTCATGGAACA
CGATCCGGATGCCTTCAGAAACAACTCAATCGCCTGTTTGAGGGCCAAGG
CGCAGGAGCACCAGGCACGACTCCTGAACAACGGTGGGCTCTTCCTGCAG
GTGCGTCGGTTCGCCCAGGGTCAGGCGCAGATCCAGGACCCAAGTGATAT
GCTCAAGCTCAGCGAGGAGCACAACAACAACAGCCCGATTCCCATTCCAC
CCGCCCACTCGACTGTCAATACGCAAGTCAATGTGAAAATGGAGCTGACC
GCCAATGGGGGTTCAATGAAAAACTATGAGGAGGCCGCAAGCTTTCTAGA
CCAT

BO05128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx2-RA 1923 CG33980-PA 1..1920 17..1936 9600 100 Plus
Vsx2-RB 1938 CG33980-PB 1..1935 17..1936 9415 99.2 Plus
Vsx1-RB 2514 CG4136-PB 1168..1502 689..1023 655 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx2-RA 2358 CG33980-RA 222..2141 17..1936 9600 100 Plus
Vsx2-RB 2373 CG33980-RB 222..2156 17..1936 9415 99.2 Plus
Vsx1-RB 3633 CG4136-RB 1460..1794 689..1023 655 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5529495..5530148 1668..1015 3270 100 Minus
X 23542271 X 5559409..5559962 570..17 2770 100 Minus
X 23542271 X 5529144..5529414 1936..1666 1355 100 Minus
X 23542271 X 5546722..5546946 844..620 1125 100 Minus
X 23542271 X 5531265..5531447 1021..839 900 99.5 Minus
X 23542271 X 5610842..5611026 839..1023 430 82.2 Plus
X 23542271 X 5553454..5553506 621..569 265 100 Minus
X 23542271 X 5606708..5606863 689..844 255 77.6 Plus
Blast to na_te.dros performed 2014-11-28 07:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2665 121..468 350 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2544 57..308 340 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6882 158..330 309 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6916 156..331 298 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6953 99..314 295 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2257..2474 112..331 275 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2467 118..312 248 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2372..2908 68..588 245 52.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2605..3026 136..568 236 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..3018 141..359 221 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2950 146..338 218 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..7201 68..475 217 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6526..6900 166..561 212 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2549 102..288 211 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2787..2957 156..331 201 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..7009 62..331 190 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1485..1586 122..224 187 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2520 68..237 181 59.2 Plus
roo 9092 roo DM_ROO 9092bp 1106..1153 168..215 177 85.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..7018 62..330 165 58.1 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 972..1031 156..214 144 73.3 Plus
roo 9092 roo DM_ROO 9092bp 1124..1166 174..216 134 79.1 Plus
TART-A 13424 TART-A 13424bp 10181..10296 175..288 133 63 Plus
roo 9092 roo DM_ROO 9092bp 1030..1119 124..214 129 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1596 141..214 124 64.9 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6597..6757 174..325 123 60.7 Plus
TART-C 11124 TART-C TARTC 11124bp 8053..8213 174..325 123 60.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3238..3348 112..231 121 59.2 Plus
roo 9092 roo DM_ROO 9092bp 1059..1177 103..218 119 58 Plus
TART-C 11124 TART-C TARTC 11124bp 9168..9222 161..214 119 70.9 Plus
BS 5142 BS BS 5142bp 2018..2073 150..205 118 67.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 152..192 174..214 115 75.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9182..9222 174..214 115 75.6 Plus

BO05128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:47 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
CG33980-RA 1..1923 17..1940 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:13 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
CG33980-RA 222..2141 17..1938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:37 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 222..2141 17..1938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:47 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
CG33980-RA 209..2144 5..1940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:40 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx2-RA 222..2141 17..1938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:40 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
X 5529142..5529411 1669..1938 99 <- Minus
X 5529495..5530146 1017..1668 100 <- Minus
X 5531270..5531444 842..1016 100 <- Minus
X 5546725..5546945 621..841 100 <- Minus
X 5553455..5553505 570..620 100 <- Minus
X 5559410..5559962 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:37 Download gff for BO05128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5423175..5423444 1669..1938 99 <- Minus
arm_X 5423528..5424179 1017..1668 100 <- Minus
arm_X 5425303..5425477 842..1016 100 <- Minus
arm_X 5440758..5440978 621..841 100 <- Minus
arm_X 5447488..5447538 570..620 100 <- Minus
arm_X 5453443..5453995 17..569 100   Minus

BO05128.pep Sequence

Translation from 16 to 1954

> BO05128.pep
MPQRSPFAIQELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNA
TMATAATSAATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQY
REHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHQHHPHH
HPHHPHGAVGGPPPPPPMQHHHPHHPHHPLLHAQGFPQLKSFAAGAGTCL
PGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFK
EAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAE
YGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMHRKSIEAQSALKDDS
GVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSAST
SAPPTSTSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQL
QQQQQQQASLYLGAGAVVTGCAPPSYHPLLDAANAAGAGAAASSKDFHMI
MNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHNLAAALMEHDPDAF
RNNSIACLRAKAQEHQARLLNNGGLFLQVRRFAQGQAQIQDPSDMLKLSE
EHNNNSPIPIPPAHSTVNTQVNVKMELTANGGSMKNYEEAASFLDH

BO05128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx2-PA 640 CG33980-PA 1..640 1..640 3374 100 Plus
Vsx2-PB 645 CG33980-PB 1..645 1..640 3358 99.2 Plus
Vsx1-PB 837 CG4136-PB 289..703 103..544 677 41.2 Plus
Vsx1-PA 837 CG4136-PA 289..703 103..544 677 41.2 Plus
Gsc-PC 415 CG2851-PC 150..342 57..290 284 35.2 Plus