Clone Sequence Records
BO05132.3prime Sequence
903 bp (860 high quality bases) assembled on 2005-12-02
> BO05132.3prime
ATGGTCTAGAAAGCTTGCTGCATTGTCCAGCGCGATGAAGTAGGAAATAT
CCTCCGGACTGTCTTCGGTGGTCAGGTACACGATCTCCTCGTAAACGTTT
TCTTCGGCAGTTGTATATTCTATCATTTCAAAGCCGGGATCTATTTGAAC
CACCTCGTCGATCTCCACTAGATTGATCTCTTCCAGTCCGTTTTGCTTAT
CTATATCCTGTATATCCTCCACAACATCTGGCTCTTCCATAACATCCATA
TCAAGCTCCTCCACAAAATTTCTCTCCTCTCTGTGATCAATCTCCTCCAG
CTCATTTTCCGCTTCCAAGTATTCTACTGGCTCAAGAGCTTCAGTTTCCT
CCAGACCATCAAGGTCAGCTTGAATCTTGGCCAGATGCCTTGCCGATCGC
ATGTGCCGAACGAAGCAGAATCTCCTGGCCGTTCTGTATTCGCAGGGCTT
GCACTCCAGGGTGCACCTGCACTCCTTCTTGTAGGCGAGGTATTCGTCCT
CGGTCTCCCCAGACTCCCCAGATAGCTCCACCATCTGTTCCTGCTCCTGG
GGCAGATACTGTATGTATTCATTAGCCTCCAGCTGGCTTTGCACGACCTC
GATGTTCGCCTGGCTTTTTGCTTGCATCTCGAATTGAGATTTTCGAGTGG
TGCTGTAGTCACACGGCGTGCACGTGGTCAGGATGTCTTCCGTGTATCGT
GTTTTCTCCGCATCCGCGGGCGCTGGCTCCTCTACTCTTTTTATGCGTTT
TACCGCCGGTTCCGCCCTCTCGGCCTCGTCCATCAGCTTCTCGCACTCCT
CCTGCTCCTTCATTATGTGGCGCCTCGACTCCTTGTGCCGGTCGAAGCAA
TACCGTTTGGCGGTCTTGTAGCCGCAGACGTTGCACGAGAACAGTGACGA
TTC
BO05132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-PA | 1146 | CG17186-RA | 259..1143 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1482 | CG17186-RA | 356..1240 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19876216..19877100 | 19..903 | 4425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:35:30 has no hits.
BO05132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:00 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-PA | 259..1146 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:58 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-PA | 259..1146 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:11 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 356..1247 | 10..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:08 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 356..1247 | 10..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:08 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19876209..19877100 | 10..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:11 Download gff for
BO05132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15701931..15702822 | 10..903 | 99 | | Plus |
BO05132.5prime Sequence
902 bp (845 high quality bases) assembled on 2005-12-02
> BO05132.5prime
GAAGTTATCAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGA
CGATTGAGGCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCAC
CTAAAACAAGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAA
GCGACTGACTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAA
GAGACTTGAGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCC
TGCTCTGACTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGT
CTGCGGCTACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGT
CGAGGCGCCACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGAC
GAGGCCGAGAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGA
GCCAGCGCCCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGA
CCACGTGCACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAG
ATGCAAGCAAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGA
GGCTAATGAATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGG
AGCTATCTGGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAG
AAGGAGTGCAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGC
CAGGAGATTCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCA
AGATTCAAGCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCA
GTAGAATACTTGGAAGCGAAAAATGAGCTGGAGGAGATTGATCACAGAGA
GG
BO05132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-PA | 1146 | CG17186-RA | 1..886 | 17..902 | 4380 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1482 | CG17186-RA | 98..983 | 17..902 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19876473..19877282 | 902..93 | 4035 | 99.9 | Minus |
| 3R | 32079331 | 3R | 19877342..19877417 | 92..17 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:44:47 has no hits.
BO05132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:01 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:37:59 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:01 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..983 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:29 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..983 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:29 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19876473..19877282 | 93..902 | 99 | <- | Minus |
| 3R | 19877342..19877417 | 17..92 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:01 Download gff for
BO05132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15702195..15703004 | 93..902 | 99 | <- | Minus |
| arm_3R | 15703064..15703139 | 17..92 | 98 | | Minus |
BO05132.complete Sequence
1177 bp (1177 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629983
> BO05132.complete
GAAGTTATCAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGA
CGATTGAGGCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCAC
CTAAAACAAGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAA
GCGACTGACTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAA
GAGACTTGAGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCC
TGCTCTGACTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGT
CTGCGGCTACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGT
CGAGGCGCCACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGAC
GAGGCCGAGAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGA
GCCAGCGCCCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGA
CCACGTGCACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAG
ATGCAAGCAAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGA
GGCTAATGAATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGG
AGCTATCTGGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAG
AAGGAGTGCAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGC
CAGGAGATTCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCA
AGATTCAAGCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCA
GTAGAATACTTGGAAGCGGAAAATGAGCTGGAGGAGATTGATCACAGAGA
GGAGAGAAATTTTGTGGAGGAGCTTGATATGGATGTTATGGAAGAGCCAG
ATGTTGTGGAGGATATACAGGATATAGATAAGCAAAACGGACTGGAAGAG
ATCAATCTAGTGGAGATCGACGAGGTGGTTCAAATAGATCCCGGCTTTGA
AATGATAGAATATACAACTGCCGAAGAAAACGTTTACGAGGAGATCGTGT
ACCTGACCACCGAAGACAGTCCGGAGGATATTTCCTACTTCATCGCGCTG
GACAATGCAGCAAGCTTTCTAGACCAT
BO05132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1146 | CG17186-PA | 1..1143 | 17..1159 | 5700 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1482 | CG17186-RA | 98..1240 | 17..1159 | 5700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19876216..19877282 | 1159..93 | 5335 | 100 | Minus |
| 3R | 32079331 | 3R | 19877342..19877417 | 92..17 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:14 has no hits.
BO05132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:55 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 1..1146 | 17..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:47 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 22..1171 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:44 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1240 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:55 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 22..1171 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:55 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1240 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:55 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19876214..19877282 | 93..1161 | 99 | <- | Minus |
| 3R | 19877342..19877417 | 17..92 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:44 Download gff for
BO05132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15701936..15703004 | 93..1161 | 99 | <- | Minus |
| arm_3R | 15703064..15703139 | 17..92 | 98 | | Minus |
BO05132.pep Sequence
Translation from 16 to 1177
> BO05132.pep
MSQTCQRTETLTIEALDFIYEDEMEYLHLKQAPRKEEQVKAVKIKRLTCN
INGCTYSTDRRRDLRRHRRSQKHMLLESCSDSESEVESSLFSCNVCGYKT
AKRYCFDRHKESRRHIMKEQEECEKLMDEAERAEPAVKRIKRVEEPAPAD
AEKTRYTEDILTTCTPCDYSTTRKSQFEMQAKSQANIEVVQSQLEANEYI
QYLPQEQEQMVELSGESGETEDEYLAYKKECRCTLECKPCEYRTARRFCF
VRHMRSARHLAKIQADLDGLEETEALEPVEYLEAENELEEIDHREERNFV
EELDMDVMEEPDVVEDIQDIDKQNGLEEINLVEIDEVVQIDPGFEMIEYT
TAEENVYEEIVYLTTEDSPEDISYFIALDNAASFLDH
BO05132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-PA | 381 | CG17186-PA | 1..381 | 1..381 | 1987 | 100 | Plus |
