Clone BO05135 Report

Search the DGRC for BO05135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17197-RB
Protein status:BO05135.pep: validated not full length
Sequenced Size:904

Clone Sequence Records

BO05135.3prime Sequence

902 bp (816 high quality bases) assembled on 2005-12-02

> BO05135.3prime
ATGGTCTAGAAAGCTTGCATCGGATACACGGACAAACTGTAATTTTGGTG
AATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAGA
GGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCAA
AATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAAA
ACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCACC
GAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGAC
CAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGGT
CCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGCC
ACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCTG
ATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGCT
TCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCATT
AGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCTC
CGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATAT
GACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCACT
AGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTAC
CACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACGA
ATAGTACTGCGGTCGGATGGGAGATTCGAACGAATATCTTTGGATTTCGA
CGCGCCAAGTACTTGGTGCAGGCCCATATCAAACACATGTCGACTGATAA
CT

BO05135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 1..824 888..65 4120 100 Minus
CG17197-PA 951 CG17197-RA 902..948 65..19 210 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..958 888..19 4335 99.9 Minus
CG17198-RB 1958 CG17198-RB 89..958 888..19 4335 99.9 Minus
CG17196-RC 881 CG17196-RC 221..412 624..433 465 82.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 65..888 4120 100 Plus
3R 32079331 3R 25775757..25775948 433..624 465 82.8 Plus
3R 32079331 3R 25774334..25774380 19..65 220 97.9 Plus
3R 32079331 3R 25776727..25776842 428..543 220 79.3 Plus
3R 32079331 3R 25777733..25777835 446..548 215 80.6 Plus
3L 28110227 3L 16861157..16861246 540..451 210 82.2 Minus
Blast to na_te.dros performed on 2015-02-13 01:42:14 has no hits.

BO05135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:04 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 65..888 100   Minus
CG17197-PA 903..951 16..64 94   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:03 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 65..888 100 -> Minus
CG17197-PA 903..951 16..64 94   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:35 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..958 19..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:50 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..958 19..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:50 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774334..25774379 19..64 97 <- Plus
3R 25774458..25775281 65..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:35 Download gff for BO05135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600056..21600101 19..64 97 <- Plus
arm_3R 21600180..21601003 65..888 100   Plus

BO05135.5prime Sequence

879 bp (794 high quality bases) assembled on 2005-12-02

> BO05135.5prime
GAAGTTATCAGTCGACATGTGCTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACGGTTTCTCCGTGT

BO05135.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 1..824 17..840 4095 99.8 Plus
CG17197-PA 951 CG17197-RA 902..941 840..879 175 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..951 17..879 4285 99.8 Plus
CG17198-RB 1958 CG17198-RB 89..951 17..879 4285 99.8 Plus
CG17196-RC 881 CG17196-RC 221..412 281..472 465 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 840..17 4105 99.9 Minus
3R 32079331 3R 25775757..25775948 472..281 465 82.8 Minus
3R 32079331 3R 25776727..25776842 477..362 220 79.3 Minus
3R 32079331 3R 25777733..25777835 459..357 215 80.6 Minus
3L 28110227 3L 16861157..16861246 365..454 210 82.2 Plus
3R 32079331 3R 25774341..25774380 879..840 185 97.5 Minus
Blast to na_te.dros performed on 2015-02-13 02:20:51 has no hits.

BO05135.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:05 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 17..840 99   Plus
CG17197-PA 903..941 841..879 97   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:04 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 17..840 99 -> Plus
CG17197-PA 903..941 841..879 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:17 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..951 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:05 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..951 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:05 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774341..25774379 841..879 97 <- Minus
3R 25774458..25775281 17..840 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:17 Download gff for BO05135.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600063..21600101 841..879 97 <- Minus
arm_3R 21600180..21601003 17..840 99   Minus

BO05135.complete Sequence

904 bp (904 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629984

> BO05135.complete
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACAGTTTCTCCGTGTATCCGATGCAAGCTTTCTAGA
CCAT

BO05135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 873 CG17197-PB 1..870 17..886 4350 100 Plus
CG17196-RC 762 CG17196-PC 190..381 281..472 465 82.8 Plus
CG17196-RB 756 CG17196-PB 184..375 281..472 465 82.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..958 17..886 4350 100 Plus
CG17198-RB 1958 CG17198-RB 89..958 17..886 4350 100 Plus
CG17196-RC 881 CG17196-RC 221..412 281..472 465 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 840..17 4120 100 Minus
3R 32079331 3R 25775757..25775948 472..281 465 82.8 Minus
3R 32079331 3R 25774334..25774380 886..840 235 100 Minus
3R 32079331 3R 25776727..25776842 477..362 220 79.3 Minus
3R 32079331 3R 25777733..25777835 459..357 215 80.6 Minus
3L 28110227 3L 16861157..16861246 365..454 210 82.2 Plus
Blast to na_te.dros performed on 2014-11-27 13:54:59 has no hits.

BO05135.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:58 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:51 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..958 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:29 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..958 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:58 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..958 17..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:59 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..958 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:59 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25774331..25774379 841..888 95 <- Minus
3R 25774458..25775281 17..840 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:29 Download gff for BO05135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600053..21600101 841..888 95 <- Minus
arm_3R 21600180..21601003 17..840 100   Minus

BO05135.pep Sequence

Translation from 16 to 904

> BO05135.pep
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSDASFLDH

BO05135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PB 290 CG17197-PB 1..290 1..290 1588 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..275 744 48.9 Plus
CG13029-PC 288 CG13029-PC 1..283 1..275 740 46.6 Plus
CG17195-PA 283 CG17195-PA 1..281 1..275 722 46.6 Plus
CG17196-PC 253 CG17196-PC 20..251 43..275 658 50.4 Plus