Clone Sequence Records
BO05135.3prime Sequence
902 bp (816 high quality bases) assembled on 2005-12-02
> BO05135.3prime
ATGGTCTAGAAAGCTTGCATCGGATACACGGACAAACTGTAATTTTGGTG
AATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAGA
GGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCAA
AATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAAA
ACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCACC
GAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGAC
CAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGGT
CCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGCC
ACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCTG
ATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGCT
TCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCATT
AGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCTC
CGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATAT
GACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCACT
AGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTAC
CACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACGA
ATAGTACTGCGGTCGGATGGGAGATTCGAACGAATATCTTTGGATTTCGA
CGCGCCAAGTACTTGGTGCAGGCCCATATCAAACACATGTCGACTGATAA
CT
BO05135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 1..824 | 888..65 | 4120 | 100 | Minus |
CG17197-PA | 951 | CG17197-RA | 902..948 | 65..19 | 210 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..958 | 888..19 | 4335 | 99.9 | Minus |
CG17198-RB | 1958 | CG17198-RB | 89..958 | 888..19 | 4335 | 99.9 | Minus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 624..433 | 465 | 82.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 65..888 | 4120 | 100 | Plus |
3R | 32079331 | 3R | 25775757..25775948 | 433..624 | 465 | 82.8 | Plus |
3R | 32079331 | 3R | 25774334..25774380 | 19..65 | 220 | 97.9 | Plus |
3R | 32079331 | 3R | 25776727..25776842 | 428..543 | 220 | 79.3 | Plus |
3R | 32079331 | 3R | 25777733..25777835 | 446..548 | 215 | 80.6 | Plus |
3L | 28110227 | 3L | 16861157..16861246 | 540..451 | 210 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:42:14 has no hits.
BO05135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:04 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 65..888 | 100 | | Minus |
CG17197-PA | 903..951 | 16..64 | 94 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:03 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 65..888 | 100 | -> | Minus |
CG17197-PA | 903..951 | 16..64 | 94 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:35 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..958 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:50 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..958 | 19..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:50 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774334..25774379 | 19..64 | 97 | <- | Plus |
3R | 25774458..25775281 | 65..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:35 Download gff for
BO05135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600056..21600101 | 19..64 | 97 | <- | Plus |
arm_3R | 21600180..21601003 | 65..888 | 100 | | Plus |
BO05135.5prime Sequence
879 bp (794 high quality bases) assembled on 2005-12-02
> BO05135.5prime
GAAGTTATCAGTCGACATGTGCTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACGGTTTCTCCGTGT
BO05135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
CG17197-PA | 951 | CG17197-RA | 902..941 | 840..879 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..951 | 17..879 | 4285 | 99.8 | Plus |
CG17198-RB | 1958 | CG17198-RB | 89..951 | 17..879 | 4285 | 99.8 | Plus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 281..472 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 840..17 | 4105 | 99.9 | Minus |
3R | 32079331 | 3R | 25775757..25775948 | 472..281 | 465 | 82.8 | Minus |
3R | 32079331 | 3R | 25776727..25776842 | 477..362 | 220 | 79.3 | Minus |
3R | 32079331 | 3R | 25777733..25777835 | 459..357 | 215 | 80.6 | Minus |
3L | 28110227 | 3L | 16861157..16861246 | 365..454 | 210 | 82.2 | Plus |
3R | 32079331 | 3R | 25774341..25774380 | 879..840 | 185 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:20:51 has no hits.
BO05135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:05 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 17..840 | 99 | | Plus |
CG17197-PA | 903..941 | 841..879 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:04 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 17..840 | 99 | -> | Plus |
CG17197-PA | 903..941 | 841..879 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:17 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..951 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:05 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..951 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:05 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774341..25774379 | 841..879 | 97 | <- | Minus |
3R | 25774458..25775281 | 17..840 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:17 Download gff for
BO05135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600063..21600101 | 841..879 | 97 | <- | Minus |
arm_3R | 21600180..21601003 | 17..840 | 99 | | Minus |
BO05135.complete Sequence
904 bp (904 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629984
> BO05135.complete
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACAGTTTCTCCGTGTATCCGATGCAAGCTTTCTAGA
CCAT
BO05135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 873 | CG17197-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
CG17196-RC | 762 | CG17196-PC | 190..381 | 281..472 | 465 | 82.8 | Plus |
CG17196-RB | 756 | CG17196-PB | 184..375 | 281..472 | 465 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..958 | 17..886 | 4350 | 100 | Plus |
CG17198-RB | 1958 | CG17198-RB | 89..958 | 17..886 | 4350 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 281..472 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 840..17 | 4120 | 100 | Minus |
3R | 32079331 | 3R | 25775757..25775948 | 472..281 | 465 | 82.8 | Minus |
3R | 32079331 | 3R | 25774334..25774380 | 886..840 | 235 | 100 | Minus |
3R | 32079331 | 3R | 25776727..25776842 | 477..362 | 220 | 79.3 | Minus |
3R | 32079331 | 3R | 25777733..25777835 | 459..357 | 215 | 80.6 | Minus |
3L | 28110227 | 3L | 16861157..16861246 | 365..454 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:59 has no hits.
BO05135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:58 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:51 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..958 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:29 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..958 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:58 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..958 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:59 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..958 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:59 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774331..25774379 | 841..888 | 95 | <- | Minus |
3R | 25774458..25775281 | 17..840 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:29 Download gff for
BO05135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600053..21600101 | 841..888 | 95 | <- | Minus |
arm_3R | 21600180..21601003 | 17..840 | 100 | | Minus |
BO05135.pep Sequence
Translation from 16 to 904
> BO05135.pep
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSDASFLDH
BO05135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PB | 290 | CG17197-PB | 1..290 | 1..290 | 1588 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..274 | 1..275 | 744 | 48.9 | Plus |
CG13029-PC | 288 | CG13029-PC | 1..283 | 1..275 | 740 | 46.6 | Plus |
CG17195-PA | 283 | CG17195-PA | 1..281 | 1..275 | 722 | 46.6 | Plus |
CG17196-PC | 253 | CG17196-PC | 20..251 | 43..275 | 658 | 50.4 | Plus |