Clone Sequence Records
BO05136.3prime Sequence
893 bp (722 high quality bases) assembled on 2005-12-02
> BO05136.3prime
ATGGTCTAGAAAGCTTGCGACGGCACGCTTCGATTTCCATCGGGTGCCAT
TGTGGGGCAGGGGACTTTTGATATTTGGCGATAGGCAAGTCCATAATCGC
CGACTTCCCAGGATCAGGGTCAAATTATTCCCTAATCCAAGGTCATAGGT
TCGATCAGAATAATCGTGCATTACTGAGTTTTTGATGACCGTCACTACTT
GGGTGCAAAACAGTGCTGCTGGAAAGAGAACGGCGAATATGTTGACACCT
AAGACACTGACTATTCGATAGAATATCACTAATTCTTTTCTACCAGGATT
CATGTAAGCATTAAAAATAATGTAATTGGCTTTGACTAAATCAAAAAATC
CAACACCGTGCTTATGGGCCAACATGAAGTTATCAAATAAGGCCACTGCG
CTACCGATGGCCGCGTAAAATGAGAACCATATGAAATATCGCTGATTATT
GTGTCCCACGCAGTTGCCCACAAAATTGCAGTGGTGATCGCGTTTCAGAA
TGCACGCATCACAGATGTTGCAGTGCCAGGACCTTGGCGGTACATTCCTT
TGGCATATTTTGCAAAAATGCCACAGGTGCTCTTCACCTTTCATTGGCTG
CTGCATTTGCGGCGGCAAAGAGTCCACAGTGTTCAACGTCGTGACGCACA
GCCTTAAGTTTTCCAGAATATTGTAGACAATCCAAGTGGTGACTAAAAAA
TGAACCGCCTGTCCAAACAATCCCAAAAACTGTGGCATTACGTAGAAAGC
TTCGAAGAAGTAGAAAAACAAGATTATGCAGACATTTATGGATACTCCCA
TGATATCTGTCCAGGATTTGATGGCCCCCACGCGTCTTGGGATGTTGATG
GTCTGCATTTGAACTTGTGATTGCATGATGCCCCGAAGCTGTA
BO05136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-PA | 900 | CG17198-RA | 23..897 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 983..1857 | 893..19 | 4375 | 100 | Minus |
| CG17198-RB | 1958 | CG17198-RB | 983..1857 | 893..19 | 4375 | 100 | Minus |
| CG17198-RA | 1066 | CG17198-RA | 91..965 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774309 | 19..893 | 4375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:51:09 has no hits.
BO05136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:06 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 24..900 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:06 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 24..900 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:34 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 92..965 | 19..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:15 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 92..965 | 19..892 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:15 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773435..25774308 | 19..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:34 Download gff for
BO05136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599157..21600030 | 19..892 | 100 | | Plus |
BO05136.5prime Sequence
918 bp (803 high quality bases) assembled on 2005-12-02
> BO05136.5prime
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCTGATCCTGGGAAGTCGGCGATTATGGACTTGCCTA
TCGCCAAATATCAAAAGTCCCCTGCCCCACAATGGCACCCGATGGAAATC
GAAGCGTGCCGTCGCAAG
BO05136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-PA | 900 | CG17198-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 961..1857 | 17..913 | 4485 | 100 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 961..1857 | 17..913 | 4485 | 100 | Plus |
| CG17198-RA | 1066 | CG17198-RA | 69..965 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774331 | 913..17 | 4485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:47:39 has no hits.
BO05136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:07 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:07 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-PA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:33 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..968 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:17 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..968 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:17 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773432..25774331 | 17..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:33 Download gff for
BO05136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599154..21600053 | 17..918 | 99 | | Minus |
BO05136.complete Sequence
931 bp (931 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629985
> BO05136.complete
GAAGTTATCAGTCGACATGAAAATTTCTCATGTATTTGTACAGCTTCGGG
GCATCATGCAATCACAAGTTCAAATGCAGACCATCAACATCCCAAGACGC
GTGGGGGCCATCAAATCCTGGACAGATATCATGGGAGTATCCATAAATGT
CTGCATAATCTTGTTTTTCTACTTCTTCGAAGCTTTCTACGTAATGCCAC
AGTTTTTGGGATTGTTTGGACAGGCGGTTCATTTTTTAGTCACCACTTGG
ATTGTCTACAATATTCTGGAAAACTTAAGGCTGTGCGTCACGACGTTGAA
CACTGTGGACTCTTTGCCGCCGCAAATGCAGCAGCCAATGAAAGGTGAAG
AGCACCTGTGGCATTTTTGCAAAATATGCCAAAGGAATGTACCGCCAAGG
TCCTGGCACTGCAACATCTGTGATGCGTGCATTCTGAAACGCGATCACCA
CTGCAATTTTGTGGGCAACTGCGTGGGACACAATAATCAGCGATATTTCA
TATGGTTCTCATTTTACGCGGCCATCGGTAGCGCAGTGGCCTTATTTGAT
AACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTTTTGATTTAGTCAA
AGCCAATTACATTATTTTTAATGCTTACATGAATCCTGGTAGAAAAGAAT
TAGTGATATTCTATCGAATAGTCAGTGTCTTAGGTGTCAACATATTCGCC
GTTCTCTTTCCAGCAGCACTGTTTTGCACCCAAGTAGTGACGGTCATCAA
AAACTCAGTAATGCACGATTATTCTGATCGAACCTATGACCTTGGATTAG
GGAATAATTTGACCCTGATCCTGGGAAGTCGGCGATTATGGACTTGCCTA
TCGCCAAATATCAAAAGTCCCCTGCCCCACAATGGCACCCGATGGAAATC
GAAGCGTGCCGTCGCAAGCTTTCTAGACCAT
BO05136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-RB | 900 | CG17198-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
| CG17198-RA | 900 | CG17198-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 961..1857 | 17..913 | 4485 | 100 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 961..1857 | 17..913 | 4485 | 100 | Plus |
| CG17198-RA | 1066 | CG17198-RA | 69..965 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25773435..25774331 | 913..17 | 4485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:03:57 has no hits.
BO05136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:59 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:53 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:19 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:59 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:02 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RA | 69..965 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:02 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25773433..25774331 | 17..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:19 Download gff for
BO05136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21599155..21600053 | 17..915 | 99 | | Minus |
BO05136.pep Sequence
Translation from 16 to 931
> BO05136.pep
MKISHVFVQLRGIMQSQVQMQTINIPRRVGAIKSWTDIMGVSINVCIILF
FYFFEAFYVMPQFLGLFGQAVHFLVTTWIVYNILENLRLCVTTLNTVDSL
PPQMQQPMKGEEHLWHFCKICQRNVPPRSWHCNICDACILKRDHHCNFVG
NCVGHNNQRYFIWFSFYAAIGSAVALFDNFMLAHKHGVGFFDLVKANYII
FNAYMNPGRKELVIFYRIVSVLGVNIFAVLFPAALFCTQVVTVIKNSVMH
DYSDRTYDLGLGNNLTLILGSRRLWTCLSPNIKSPLPHNGTRWKSKRAVA
SFLDH
BO05136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17198-PB | 299 | CG17198-PB | 1..299 | 1..299 | 1622 | 100 | Plus |
| CG17198-PA | 299 | CG17198-PA | 1..299 | 1..299 | 1622 | 100 | Plus |
| CG17196-PA | 276 | CG17196-PA | 36..274 | 49..297 | 554 | 43.4 | Plus |
| CG17197-PB | 290 | CG17197-PB | 36..275 | 49..297 | 546 | 41 | Plus |
| CG17196-PC | 253 | CG17196-PC | 21..251 | 57..297 | 538 | 44 | Plus |
