Clone BO05143 Report

Search the DGRC for BO05143

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptftz-RA
Protein status:BO05143.pep: validated full length
Sequenced Size:1264

Clone Sequence Records

BO05143.3prime Sequence

866 bp (752 high quality bases) assembled on 2005-12-02

> BO05143.3prime
ATGGTCTAGAAAGCTTGCAGACAGATGGTAGAGGTCCTGTGGATGTTGCT
GGTAGCTGCACTGATGTTGGTACTGCTGCGGGTAGGCATCGTACTGCTGG
TGGGTCTGCTGCTGAGGGTAATCATTGAGCAGGCCATAACCATGACTGTG
ACTGTGGCTGTAAGCGGGGTAGGCGGCGGTGGTTTGGTGGTGGTGGTACA
TGGGCACTGGCACCGATGGTGCCCCGGTGGTGGCGGTGCTTGTGGCCTCC
AGTGGCGGCAGCATCGCGGTGTAGCCGGCACCACAGTGCTCCGGGGAGCT
GTCCAGCGTGCGATCCTTCTTCGACTTCATGCGTCGGTTTTGGAACCAGA
TCTTGATCTGCCTTTCGCTCAGGCTCAGGGCATTGGCGATATCGATGCGA
CGACGCCGGGTGATGTATCTATTGAAGTGGAACTCCTTCTCGAGCTCCAG
GGTCTGGTAGCGGGTGTACGTCTGACGGGTGCGTTTCGAGTCTTTGCAAT
CTGATGCCAAAGTCTCCTCGATGTGCGACCAATTGAAATCGCCGGCTCCA
TTCGGGGCTGTCACAATTCGATGATTGATCTCCTGGCTGACAGCTGACGA
GGATTTCTCCCCCGGCGATTGGGGTGGCGTGCTGATGCCTTCGAGGGGCG
GCAGAGAGGTGGGCGTGGTTGGCGGAGGGGTGGCAAAGTCGCCATTCTTC
AGCTTCTGCGTCTGCGACTGGGGCGAGTAGACGTCCAAGTAGTCGACATC
CTCGGAGGCGCTGGGCGTGGGCACAGTCACGTACTCTTGGTCGTAGCTGG
GAGCGGGGCTGGCGGTGACCTTGGTGCTTACGGCGGGAGCCTTCTTCACC
TGCTCGACGGTTGTGT

BO05143.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2047-PA 1233 ftz-RA 383..1230 866..19 4240 100 Minus
CG1030-PA 1254 Scr-RA 991..1037 468..422 185 95.7 Minus
CG1030-PB 1254 Scr-RB 991..1037 468..422 185 95.7 Minus
CG1030-PC 1254 Scr-RC 991..1037 468..422 185 95.7 Minus
CG1030-PA 1254 Scr-RA 1097..1145 362..314 170 93.8 Minus
CG1030-PB 1254 Scr-RB 1097..1145 362..314 170 93.8 Minus
CG1030-PC 1254 Scr-RC 1097..1145 362..314 170 93.8 Minus
CG2189-PA 1761 Dfd-RA 1223..1271 362..314 145 91.8 Minus
CG10388-PB 1041 Ubx-RB 769..816 474..427 140 91.6 Minus
CG10388-PF 1068 Ubx-RF 796..843 474..427 140 91.6 Minus
CG10388-PD 1092 Ubx-RD 820..867 474..427 140 91.6 Minus
CG10388-PC 1119 Ubx-RC 847..894 474..427 140 91.6 Minus
CG10388-PE 1143 Ubx-RE 871..918 474..427 140 91.6 Minus
CG10388-PA 1170 Ubx-RA 898..945 474..427 140 91.6 Minus
CG13424-PA 1236 CG13424-RA 483..509 361..335 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 453..1300 866..19 4240 100 Minus
Scr-RB 3987 CG1030-RB 1462..1616 468..314 400 83.9 Minus
Scr-RA 4140 CG1030-RA 1615..1769 468..314 400 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6865286..6865770 503..19 2425 100 Minus
3R 32079331 3R 6864776..6865141 866..501 1830 100 Minus
3R 32079331 3R 6825491..6825645 314..468 400 83.9 Plus
3R 32079331 3R 16810163..16810323 314..474 340 80.7 Plus
3R 32079331 3R 6898361..6898521 314..474 340 80.7 Plus
3R 32079331 3R 6801029..6801183 468..314 220 76.1 Minus
Blast to na_te.dros performed on 2015-02-11 23:32:14 has no hits.

BO05143.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:16 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-PA 383..1233 16..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:19 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2047-PA 383..1233 16..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:06 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 453..1300 19..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:36 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 453..1300 19..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:36 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6864776..6865141 501..866 100 -> Minus
3R 6865289..6865770 19..500 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:06 Download gff for BO05143.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690498..2690863 501..866 100 -> Minus
arm_3R 2691011..2691492 19..500 100   Minus

BO05143.5prime Sequence

875 bp (790 high quality bases) assembled on 2005-12-02

> BO05143.5prime
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTCCACTTCAATAGATACA
TCACCCGGCGTCGTCGCATCGATAT

BO05143.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2047-PA 1233 ftz-RA 1..817 17..833 4085 100 Plus
CG2047-PA 1233 ftz-RA 818..860 833..875 215 100 Plus
CG1030-PA 1254 Scr-RA 991..1027 797..833 135 94.5 Plus
CG1030-PB 1254 Scr-RB 991..1027 797..833 135 94.5 Plus
CG1030-PC 1254 Scr-RC 991..1027 797..833 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 67..930 13..875 4280 99.8 Plus
Scr-RB 3987 CG1030-RB 1462..1508 797..842 180 93.6 Plus
Scr-RA 4140 CG1030-RA 1615..1661 797..842 180 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6864390..6865141 13..764 3745 99.9 Plus
3R 32079331 3R 6865286..6865400 762..875 525 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 23:34:06 has no hits.

BO05143.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:17 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-PA 1..860 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:20 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2047-PA 1..860 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:08 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..930 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:09 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..930 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:09 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6864386..6865141 9..764 99 -> Plus
3R 6865289..6865400 765..875 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:08 Download gff for BO05143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690108..2690863 9..764 99 -> Plus
arm_3R 2691011..2691122 765..875 99   Plus

BO05143.complete Sequence

1264 bp (1264 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629986

> BO05143.complete
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGCCCTGAGCCTGAGCGA
AAGGCAGATCAAGATCTGGTTCCAAAACCGACGCATGAAGTCGAAGAAGG
ATCGCACGCTGGACAGCTCCCCGGAGCACTGTGGTGCCGGCTACACCGCG
ATGCTGCCGCCACTGGAGGCCACAAGCACCGCCACCACCGGGGCACCATC
GGTGCCAGTGCCCATGTACCACCACCACCAAACCACCGCCGCCTACCCCG
CTTACAGCCACAGTCACAGTCATGGTTATGGCCTGCTCAATGATTACCCT
CAGCAGCAGACCCACCAGCAGTACGATGCCTACCCGCAGCAGTACCAACA
TCAGTGCAGCTACCAGCAACATCCACAGGACCTCTACCATCTGTCTGCAA
GCTTTCTAGACCAT

BO05143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1233 CG2047-PA 1..1230 17..1246 6150 100 Plus
Scr-RB 1254 CG1030-PB 991..1145 797..951 400 83.9 Plus
Scr-RA 1254 CG1030-PA 991..1145 797..951 400 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 67..1300 13..1246 6155 99.9 Plus
Scr-RB 3987 CG1030-RB 1462..1616 797..951 400 83.9 Plus
Scr-RA 4140 CG1030-RA 1615..1769 797..951 400 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6864390..6865141 13..764 3745 99.9 Plus
3R 32079331 3R 6865286..6865770 762..1246 2425 100 Plus
3R 32079331 3R 6825491..6825645 951..797 400 83.9 Minus
3R 32079331 3R 6898361..6898521 951..791 340 80.7 Minus
3R 32079331 3R 16810163..16810323 951..791 340 80.7 Minus
Blast to na_te.dros performed on 2014-11-27 14:18:47 has no hits.

BO05143.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:47 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 1..1233 17..1249 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:36 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..1300 9..1246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:36 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 71..1300 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:47 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..1300 9..1246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:22 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 71..1300 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:22 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6865289..6865770 765..1248 99   Plus
3R 6864394..6865141 17..764 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:36 Download gff for BO05143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690116..2690863 17..764 100 -> Plus
arm_3R 2691011..2691492 765..1248 99   Plus

BO05143.pep Sequence

Translation from 16 to 1264

> BO05143.pep
MATTNSQSHYSYADNMNMYNMYHPHSLPPTYYDNSGSNAYYQNTSNYQGY
YPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIA
AVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAP
SYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLP
PLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASD
CKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKI
WFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPM
YHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCSYQ
QHPQDLYHLSASFLDH

BO05143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-PA 410 CG2047-PA 1..410 1..410 2214 100 Plus
Antp-PF 365 CG1028-PF 38..355 5..325 283 28.8 Plus
Antp-PE 365 CG1028-PE 38..355 5..325 283 28.8 Plus
Antp-PJ 378 CG1028-PJ 38..368 5..325 283 30.5 Plus
Antp-PI 378 CG1028-PI 38..368 5..325 283 30.5 Plus