Clone Sequence Records
BO05143.3prime Sequence
866 bp (752 high quality bases) assembled on 2005-12-02
> BO05143.3prime
ATGGTCTAGAAAGCTTGCAGACAGATGGTAGAGGTCCTGTGGATGTTGCT
GGTAGCTGCACTGATGTTGGTACTGCTGCGGGTAGGCATCGTACTGCTGG
TGGGTCTGCTGCTGAGGGTAATCATTGAGCAGGCCATAACCATGACTGTG
ACTGTGGCTGTAAGCGGGGTAGGCGGCGGTGGTTTGGTGGTGGTGGTACA
TGGGCACTGGCACCGATGGTGCCCCGGTGGTGGCGGTGCTTGTGGCCTCC
AGTGGCGGCAGCATCGCGGTGTAGCCGGCACCACAGTGCTCCGGGGAGCT
GTCCAGCGTGCGATCCTTCTTCGACTTCATGCGTCGGTTTTGGAACCAGA
TCTTGATCTGCCTTTCGCTCAGGCTCAGGGCATTGGCGATATCGATGCGA
CGACGCCGGGTGATGTATCTATTGAAGTGGAACTCCTTCTCGAGCTCCAG
GGTCTGGTAGCGGGTGTACGTCTGACGGGTGCGTTTCGAGTCTTTGCAAT
CTGATGCCAAAGTCTCCTCGATGTGCGACCAATTGAAATCGCCGGCTCCA
TTCGGGGCTGTCACAATTCGATGATTGATCTCCTGGCTGACAGCTGACGA
GGATTTCTCCCCCGGCGATTGGGGTGGCGTGCTGATGCCTTCGAGGGGCG
GCAGAGAGGTGGGCGTGGTTGGCGGAGGGGTGGCAAAGTCGCCATTCTTC
AGCTTCTGCGTCTGCGACTGGGGCGAGTAGACGTCCAAGTAGTCGACATC
CTCGGAGGCGCTGGGCGTGGGCACAGTCACGTACTCTTGGTCGTAGCTGG
GAGCGGGGCTGGCGGTGACCTTGGTGCTTACGGCGGGAGCCTTCTTCACC
TGCTCGACGGTTGTGT
BO05143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2047-PA | 1233 | ftz-RA | 383..1230 | 866..19 | 4240 | 100 | Minus |
CG1030-PA | 1254 | Scr-RA | 991..1037 | 468..422 | 185 | 95.7 | Minus |
CG1030-PB | 1254 | Scr-RB | 991..1037 | 468..422 | 185 | 95.7 | Minus |
CG1030-PC | 1254 | Scr-RC | 991..1037 | 468..422 | 185 | 95.7 | Minus |
CG1030-PA | 1254 | Scr-RA | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
CG1030-PB | 1254 | Scr-RB | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
CG1030-PC | 1254 | Scr-RC | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
CG2189-PA | 1761 | Dfd-RA | 1223..1271 | 362..314 | 145 | 91.8 | Minus |
CG10388-PB | 1041 | Ubx-RB | 769..816 | 474..427 | 140 | 91.6 | Minus |
CG10388-PF | 1068 | Ubx-RF | 796..843 | 474..427 | 140 | 91.6 | Minus |
CG10388-PD | 1092 | Ubx-RD | 820..867 | 474..427 | 140 | 91.6 | Minus |
CG10388-PC | 1119 | Ubx-RC | 847..894 | 474..427 | 140 | 91.6 | Minus |
CG10388-PE | 1143 | Ubx-RE | 871..918 | 474..427 | 140 | 91.6 | Minus |
CG10388-PA | 1170 | Ubx-RA | 898..945 | 474..427 | 140 | 91.6 | Minus |
CG13424-PA | 1236 | CG13424-RA | 483..509 | 361..335 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 453..1300 | 866..19 | 4240 | 100 | Minus |
Scr-RB | 3987 | CG1030-RB | 1462..1616 | 468..314 | 400 | 83.9 | Minus |
Scr-RA | 4140 | CG1030-RA | 1615..1769 | 468..314 | 400 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6865286..6865770 | 503..19 | 2425 | 100 | Minus |
3R | 32079331 | 3R | 6864776..6865141 | 866..501 | 1830 | 100 | Minus |
3R | 32079331 | 3R | 6825491..6825645 | 314..468 | 400 | 83.9 | Plus |
3R | 32079331 | 3R | 16810163..16810323 | 314..474 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 6898361..6898521 | 314..474 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 6801029..6801183 | 468..314 | 220 | 76.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:32:14 has no hits.
BO05143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:16 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-PA | 383..1233 | 16..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:19 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2047-PA | 383..1233 | 16..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:06 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 453..1300 | 19..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:36 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 453..1300 | 19..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:36 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6864776..6865141 | 501..866 | 100 | -> | Minus |
3R | 6865289..6865770 | 19..500 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:06 Download gff for
BO05143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690498..2690863 | 501..866 | 100 | -> | Minus |
arm_3R | 2691011..2691492 | 19..500 | 100 | | Minus |
BO05143.5prime Sequence
875 bp (790 high quality bases) assembled on 2005-12-02
> BO05143.5prime
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTCCACTTCAATAGATACA
TCACCCGGCGTCGTCGCATCGATAT
BO05143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2047-PA | 1233 | ftz-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG2047-PA | 1233 | ftz-RA | 818..860 | 833..875 | 215 | 100 | Plus |
CG1030-PA | 1254 | Scr-RA | 991..1027 | 797..833 | 135 | 94.5 | Plus |
CG1030-PB | 1254 | Scr-RB | 991..1027 | 797..833 | 135 | 94.5 | Plus |
CG1030-PC | 1254 | Scr-RC | 991..1027 | 797..833 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 67..930 | 13..875 | 4280 | 99.8 | Plus |
Scr-RB | 3987 | CG1030-RB | 1462..1508 | 797..842 | 180 | 93.6 | Plus |
Scr-RA | 4140 | CG1030-RA | 1615..1661 | 797..842 | 180 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6864390..6865141 | 13..764 | 3745 | 99.9 | Plus |
3R | 32079331 | 3R | 6865286..6865400 | 762..875 | 525 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:34:06 has no hits.
BO05143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:17 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:20 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2047-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:08 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..930 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:09 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..930 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:09 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6864386..6865141 | 9..764 | 99 | -> | Plus |
3R | 6865289..6865400 | 765..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:08 Download gff for
BO05143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690108..2690863 | 9..764 | 99 | -> | Plus |
arm_3R | 2691011..2691122 | 765..875 | 99 | | Plus |
BO05143.complete Sequence
1264 bp (1264 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629986
> BO05143.complete
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGCCCTGAGCCTGAGCGA
AAGGCAGATCAAGATCTGGTTCCAAAACCGACGCATGAAGTCGAAGAAGG
ATCGCACGCTGGACAGCTCCCCGGAGCACTGTGGTGCCGGCTACACCGCG
ATGCTGCCGCCACTGGAGGCCACAAGCACCGCCACCACCGGGGCACCATC
GGTGCCAGTGCCCATGTACCACCACCACCAAACCACCGCCGCCTACCCCG
CTTACAGCCACAGTCACAGTCATGGTTATGGCCTGCTCAATGATTACCCT
CAGCAGCAGACCCACCAGCAGTACGATGCCTACCCGCAGCAGTACCAACA
TCAGTGCAGCTACCAGCAACATCCACAGGACCTCTACCATCTGTCTGCAA
GCTTTCTAGACCAT
BO05143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1233 | CG2047-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Scr-RB | 1254 | CG1030-PB | 991..1145 | 797..951 | 400 | 83.9 | Plus |
Scr-RA | 1254 | CG1030-PA | 991..1145 | 797..951 | 400 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 67..1300 | 13..1246 | 6155 | 99.9 | Plus |
Scr-RB | 3987 | CG1030-RB | 1462..1616 | 797..951 | 400 | 83.9 | Plus |
Scr-RA | 4140 | CG1030-RA | 1615..1769 | 797..951 | 400 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6864390..6865141 | 13..764 | 3745 | 99.9 | Plus |
3R | 32079331 | 3R | 6865286..6865770 | 762..1246 | 2425 | 100 | Plus |
3R | 32079331 | 3R | 6825491..6825645 | 951..797 | 400 | 83.9 | Minus |
3R | 32079331 | 3R | 6898361..6898521 | 951..791 | 340 | 80.7 | Minus |
3R | 32079331 | 3R | 16810163..16810323 | 951..791 | 340 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:47 has no hits.
BO05143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:47 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 1..1233 | 17..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:36 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..1300 | 9..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:36 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 71..1300 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:47 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..1300 | 9..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:22 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 71..1300 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:22 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6865289..6865770 | 765..1248 | 99 | | Plus |
3R | 6864394..6865141 | 17..764 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:36 Download gff for
BO05143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690116..2690863 | 17..764 | 100 | -> | Plus |
arm_3R | 2691011..2691492 | 765..1248 | 99 | | Plus |
BO05143.pep Sequence
Translation from 16 to 1264
> BO05143.pep
MATTNSQSHYSYADNMNMYNMYHPHSLPPTYYDNSGSNAYYQNTSNYQGY
YPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIA
AVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAP
SYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLP
PLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASD
CKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKI
WFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPM
YHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCSYQ
QHPQDLYHLSASFLDH
BO05143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-PA | 410 | CG2047-PA | 1..410 | 1..410 | 2214 | 100 | Plus |
Antp-PF | 365 | CG1028-PF | 38..355 | 5..325 | 283 | 28.8 | Plus |
Antp-PE | 365 | CG1028-PE | 38..355 | 5..325 | 283 | 28.8 | Plus |
Antp-PJ | 378 | CG1028-PJ | 38..368 | 5..325 | 283 | 30.5 | Plus |
Antp-PI | 378 | CG1028-PI | 38..368 | 5..325 | 283 | 30.5 | Plus |