Clone Sequence Records
BO05147.3prime Sequence
511 bp (436 high quality bases) assembled on 2005-12-02
> BO05147.3prime
ATGGTCTAGAAAGCTTGCGCTCTCGATGCCCTCCGCCTCTAACTGGGCCT
CAATGATATCTGCGTGCAGGCGCACCATGTGGTTATTCAGGTTGCCAACG
CTCTGGTAGCACTTGTCACAGTACTCACAGGCGAATGGCTTCTCGCCGGT
GTGCACCAGGAGGTGGGAGTTGAGGTGGCCACGAGTGAAGAAGGCCTTCG
AGCAGCGATCGCACTTGAAGGGCCGCTCCATGTTGGGGTTGTGGGAGCGC
ATATGGGTGCGGAGGTCGGACTTGGTGGGCCAGCTCTTCGAGCAGCGCTG
GCACTCGAATATGCGCGGCTTGGCTTCGCCGGTGTGGGTGCGCAGGTGGG
ACAGCAGCTGCGTGCGCAGGATGAAGCGGCGGTCGCAGTGCTGGCAGCCG
AATGGACGCTCCGTTGAGTGCACCGACTTCACGTGGTAGCGAAGACTGTG
CCGCGAGGCAAAGTTCTTGCGGCACTCCTCGCACTGGTACCTCATCTCGC
CCATGCCGTGA
BO05147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-PA | 1257 | CG30431-RA | 762..1254 | 511..19 | 2465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1849 | CG30431-RA | 984..1476 | 511..19 | 2465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6204359..6204851 | 511..19 | 2465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:16:51 has no hits.
BO05147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:23 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-PA | 763..1257 | 16..510 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:30 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-PA | 763..1257 | 16..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:26 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 985..1482 | 13..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:23:41 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 985..1482 | 13..510 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:23:41 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6204360..6204857 | 13..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:26 Download gff for
BO05147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2091865..2092362 | 13..510 | 99 | | Minus |
BO05147.5prime Sequence
432 bp (419 high quality bases) assembled on 2005-12-02
> BO05147.5prime
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGA
BO05147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-PA | 1257 | CG30431-RA | 1..416 | 17..432 | 2080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1849 | CG30431-RA | 223..638 | 17..432 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6202947..6203362 | 17..432 | 2080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:08:29 has no hits.
BO05147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:24 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-PA | 1..415 | 17..431 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:32 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-PA | 1..415 | 17..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:47 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..637 | 10..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:55 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..637 | 10..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:55 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6202941..6203361 | 10..431 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:47 Download gff for
BO05147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2090446..2090866 | 10..431 | 99 | | Plus |
BO05147.complete Sequence
1288 bp assembled on 2010-02-24
GenBank Submission: KX798321
> BO05147.complete
GAAGTTATCAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCT
GCCGCTGCTGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGAC
GCCTCTAGCCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCG
CCTTGAGCACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTC
GTCGCCTGCACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAA
CAGGTGCTACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGG
AGACGCCTTGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGG
GCAGCCTGGAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTG
GCCCATGTGGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTT
CCAAGACAGCTCGCACAGTGAACATGATATTCCCTCGTACTGGGAATCGT
CGGTAGATTCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAGACCGCC
GAGCTCTTTGCAGTCGAGCCCCCAACGCCGCCGGAATCATCCGAAGAGCC
GGCACCTGATGCCGCAGAAAAGCCCAAGATGCGGAGAGCCAGGCCGCGCC
AGGATAACGTCAAGCCCAAGGAGAGGAAGGCCTCTGGTGCCGTGCACCCG
CGATCCTTGCACCCGTGCCCCGAGTGCGAAAAGAAGTTCACTCGCAACTT
TCAGCTGAAGCTGCACATGACAGCCGTTCACGGCATGGGCGAGATGAGGT
ACCAGTGCGAGGAGTGCCGCAAGAACTTTGCCTCGCGGCACAGTCTTCGC
TACCACGTGAAGTCGGTGCACTCAACGGAGCGTCCATTCGGCTGCCAGCA
CTGCGACCGCCGCTTCATCCTGCGCACGCAGCTGCTGTCCCACCTGCGCA
CCCACACCGGCGAAGCCAAGCCGCGCATATTCGAGTGCCAGCGCTGCTCG
AAGAGCTGGCCCACCAAGTCCGACCTCCGCACCCATATGCGCTCCCACAA
CCCCAACATGGAGCGGCCCTTCAAGTGCGATCGCTGCTCGAAGGCCTTCT
TCACTCGTGGCCACCTCAACTCCCACCTCCTGGTGCACACCGGCGAGAAG
CCATTCGCCTGTGAGTACTGTGACAAGTGCTACCAGAGCGTTGGCAACCT
GAATAACCACATGGTGCGCCTGCACGCAGATATCATTGAGGCCCAGTTAG
AGGCGGAGGGCATCGAGAGCGCAAGCTTTCTAGACCAT
BO05147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1257 | CG30431-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1849 | CG30431-RA | 223..1476 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6204018..6204851 | 437..1270 | 4170 | 100 | Plus |
| 2R | 25286936 | 2R | 6202947..6203367 | 17..437 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:27:51 has no hits.
BO05147.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:40 Download gff for
BO05147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 205..1458 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:46 Download gff for
BO05147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 223..1476 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:22 Download gff for
BO05147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 223..1476 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:22 Download gff for
BO05147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6202947..6203367 | 17..437 | 100 | -> | Plus |
| 2R | 6204019..6204851 | 438..1272 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:46 Download gff for
BO05147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2090452..2090872 | 17..437 | 100 | -> | Plus |
| arm_2R | 2091524..2092356 | 438..1272 | 99 | | Plus |
BO05147.pep Sequence
Translation from 16 to 1288
> BO05147.pep
MLSLLPHHPLVCRCCLLEQPPLYHSLYDASSQLAVELKALAPALRLEHGD
NLTDVICDLCLRRLHDARDFQRRCEHSEQVLRMRHEHWKHTVAVGDALAL
DDVLECLEREVGSLEGPMSVPLQASKPVAHVAPLMETVDFESLDFQDSSH
SEHDIPSYWESSVDSGSLNTPHHQPETAELFAVEPPTPPESSEEPAPDAA
EKPKMRRARPRQDNVKPKERKASGAVHPRSLHPCPECEKKFTRNFQLKLH
MTAVHGMGEMRYQCEECRKNFASRHSLRYHVKSVHSTERPFGCQHCDRRF
ILRTQLLSHLRTHTGEAKPRIFECQRCSKSWPTKSDLRTHMRSHNPNMER
PFKCDRCSKAFFTRGHLNSHLLVHTGEKPFACEYCDKCYQSVGNLNNHMV
RLHADIIEAQLEAEGIESASFLDH
BO05147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-PA | 418 | CG30431-PA | 1..418 | 1..418 | 2281 | 100 | Plus |
| crol-PC | 756 | CG14938-PC | 349..521 | 230..405 | 360 | 41.3 | Plus |
| crol-PG | 878 | CG14938-PG | 471..643 | 230..405 | 360 | 41.3 | Plus |
| crol-PD | 878 | CG14938-PD | 471..643 | 230..405 | 360 | 41.3 | Plus |
| CG15436-PA | 346 | CG15436-PA | 128..288 | 234..403 | 358 | 41.8 | Plus |
| CG15436-PA | 346 | CG15436-PA | 109..319 | 192..405 | 333 | 34.2 | Plus |
| CG15436-PA | 346 | CG15436-PA | 4..345 | 11..403 | 328 | 26 | Plus |
| crol-PG | 878 | CG14938-PG | 344..526 | 211..405 | 315 | 33.3 | Plus |
| crol-PC | 756 | CG14938-PC | 239..404 | 232..405 | 314 | 35.1 | Plus |
| crol-PC | 756 | CG14938-PC | 183..345 | 232..403 | 308 | 38.4 | Plus |
| crol-PC | 756 | CG14938-PC | 265..430 | 230..403 | 287 | 34.5 | Plus |
| crol-PC | 756 | CG14938-PC | 179..317 | 258..403 | 268 | 37 | Plus |
| crol-PG | 878 | CG14938-PG | 221..383 | 232..403 | 239 | 33.7 | Plus |
| crol-PC | 756 | CG14938-PC | 407..525 | 232..351 | 218 | 37.4 | Plus |
| crol-PG | 878 | CG14938-PG | 529..647 | 232..351 | 218 | 37.4 | Plus |
