Clone Sequence Records
BO05150.3prime Sequence
449 bp (448 high quality bases) assembled on 2005-12-02
> BO05150.3prime
ATGGTCTAGAAAGCTTGCGTATTGTAAGCTGCGTTTAGTGCCGATATCGT
CGAGTATTTGGCGCAGCTCCTCATCCTCGAAGCGACCCTCTAGTGAAGGA
ATCAGCGCCTTGGCCTCCTCGGGCGCCTCCGGACACAAATTACCCAGTGC
GGCCAGTTCGAATTTGTGCAGCTTTTTCTGCATCAGCAAGCTTCGCGCAG
ACATTATCGTCTCCTTGTTTTTGAACTTTCGAAAACTATCTGTGTAGGCG
TAGGTCTTCATGAAGACCTCGGAGAACTCTTGCTCCTCGTCGGCGGATTC
GTTTTGTCGCTTTCGGTGATCGAGAAGCATGTGCACCTCCGATATCAGCA
GCGTCTCGGCATTTTCGAACTCTTTGGGAAACTGCAGGTCGGCGGCGTCC
TCATCCACCATATCCACGGGGTTCATAAAAGACATGTCGACTGATAACT
BO05150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..450 | 373..19 | 1675 | 98.8 | Minus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 435..371 | 325 | 100 | Minus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 435..372 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 435..19 | 2025 | 99 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 373..19 | 1715 | 98.9 | Minus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 373..19 | 1715 | 98.9 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 435..372 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 191..373 | 870 | 98.4 | Plus |
| 3R | 32079331 | 3R | 18253041..18253214 | 19..192 | 855 | 99.4 | Plus |
| 3R | 32079331 | 3R | 18255317..18255380 | 372..435 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:45:04 has no hits.
BO05150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:27 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 373..435 | 100 | | Minus |
| CG33520-PD | 98..453 | 15..372 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:36 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 373..435 | 100 | -> | Minus |
| CG33520-PD | 98..453 | 15..372 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:05 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..529 | 11..449 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:48 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..529 | 11..449 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:48 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253036..18253212 | 11..190 | 97 | <- | Plus |
| 3R | 18253275..18253455 | 191..371 | 98 | <- | Plus |
| 3R | 18255317..18255395 | 372..449 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:05 Download gff for
BO05150.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078758..14078934 | 11..190 | 97 | <- | Plus |
| arm_3R | 14078997..14079177 | 191..371 | 98 | <- | Plus |
| arm_3R | 14081039..14081117 | 372..449 | 93 | | Plus |
BO05150.5prime Sequence
449 bp (448 high quality bases) assembled on 2005-12-02
> BO05150.5prime
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACG
CTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAA
CGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCT
ACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATG
TCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGC
CGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGA
TTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTC
GACGATATCGGCACTAAACGCAGCTTACAATACGCAAGCTTTCTAGACC
BO05150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..450 | 79..433 | 1675 | 98.8 | Plus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 17..433 | 2025 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 79..433 | 1715 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 79..433 | 1715 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 17..80 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 261..79 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18253041..18253214 | 433..260 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:41:13 has no hits.
BO05150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:28 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 17..79 | 100 | | Plus |
| CG33520-PD | 98..453 | 80..437 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:37 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 17..79 | 100 | -> | Plus |
| CG33520-PD | 98..453 | 80..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:10 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..529 | 3..441 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:15 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..529 | 3..441 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:15 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253036..18253212 | 262..441 | 97 | <- | Minus |
| 3R | 18253275..18253455 | 81..261 | 98 | <- | Minus |
| 3R | 18255317..18255395 | 3..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:10 Download gff for
BO05150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078997..14079177 | 81..261 | 98 | <- | Minus |
| arm_3R | 14081039..14081117 | 3..80 | 93 | | Minus |
| arm_3R | 14078758..14078934 | 262..441 | 97 | <- | Minus |
BO05150.complete Sequence
451 bp (451 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629987
> BO05150.complete
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACG
CTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAA
CGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCT
ACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATG
TCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGC
CGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGA
TTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTC
GACGATATCGGCACTAAACGCAGCTTACAATACGCAAGCTTTCTAGACCA
T
BO05150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 420 | CG43662-PF | 1..417 | 17..433 | 2025 | 99 | Plus |
| Ada2a-RG | 1584 | CG43663-PG | 1..64 | 17..80 | 320 | 100 | Plus |
| Ada2a-RE | 1629 | CG43663-PE | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 17..433 | 2025 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 79..433 | 1715 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 79..433 | 1715 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 17..80 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 261..79 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18253041..18253214 | 433..260 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:41:31 has no hits.
BO05150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:51 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RD | 1..63 | 17..79 | 100 | -> | Plus |
| Rpb4-RD | 98..453 | 80..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:44 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RA | 70..147 | 3..79 | 93 | -> | Plus |
| Rpb4-RA | 1827..2184 | 80..441 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:08 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 108..524 | 17..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:51 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 1812..2169 | 81..441 | 97 | | Plus |
| Rpb4-RE | 70..147 | 3..80 | 92 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:28 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 108..524 | 17..435 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:28 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253039..18253212 | 262..435 | 98 | <- | Minus |
| 3R | 18253275..18253455 | 81..261 | 98 | <- | Minus |
| 3R | 18255317..18255380 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:08 Download gff for
BO05150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078761..14078934 | 262..435 | 98 | <- | Minus |
| arm_3R | 14078997..14079177 | 81..261 | 98 | <- | Minus |
| arm_3R | 14081039..14081102 | 17..80 | 100 | | Minus |
BO05150.pep Sequence
Translation from 16 to 451
> BO05150.pep
MSFMNPVDMVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADE
EQEFSEVFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNL
CPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQYASFLDH
BO05150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-PF | 139 | CG43662-PF | 1..139 | 1..139 | 706 | 100 | Plus |
