Clone Sequence Records
BO05156.3prime Sequence
907 bp (839 high quality bases) assembled on 2005-12-02
> BO05156.3prime
ATGGTCTAGAAAGCTTGCGAACAGCAGCGAATACAGTTGACCTCCAATGC
GCCGACACACGTTTGAGACCATATATGCGCCTGCAGAGATAGTCACGAAC
AGCGTCAACCATCCCAAGAACGTAAATTCGCCGACCCGGGGTCGGATGTG
CCGCGACAGGCCCAACCATCCGCCGTTGTCGATCAGCCAGTAGACCAGGT
CGTCCTCTATGATCTCAGCCAGACCGTCAATCAGGCACTGTAGGTAGTCG
AAATGTCCCTGGCGCACGCAGTCTATGGCAAAGCCGCCGCATACGGCAAA
TATCGAGATTATCTTGCCCCAGGTGATGCTGGAGCGAAAAAGATCCTTGG
CAACTAGGTTGAGCAACATGGGCGCCATGTCGCTGTCCTCCAGCTCGCCA
AACGGGGCCCTCGACAGCTGTCGCGATATGTTTGTGTACACCCGCGGGTG
CATCCGCTCCAGTTCCTCGCCCATGCTGTTCAGTGCCGGGAAAACTTCAT
AGACCACGTGCGAGGAGCCGGGGTCCAGGATGTTGCGCAAACGCTGTGTC
ACCTTCCGGTTGAGGACTCCTGCCCGTCGCAGCCGCGCTCTGATGTACTG
ACCACACAGACATTTCCCCTGGTTGATGATATCCATTTTGTACTCCTGGT
AGTTAGTCATCGTGCGCGTACTGCTAGCCAGCGAGGATGTGGAGGCGGCC
CGTGTCATGGGTCCGCCGGCGTGAAGGGAGCGTCCGTTAGAGGGATTGGG
TACGCTACCGGGTCCTCCTGCTCCTCCACCGACGCCTCCGCGGAGCGCCT
TTCAGTCGCTGGAGGCCGTTGCAATGGTGCCGCGGCGATTGGCCGTGTAG
ATCTCGTGGTCCAGCGACGAGGACTTGAACTGGGCCAGCTTGGGTGGCGG
ACTGGGT
BO05156.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33134-PA | 903 | debcl-RA | 14..900 | 905..19 | 4360 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 1724 | CG33134-RA | 639..1525 | 905..19 | 4390 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6652188..6652643 | 474..19 | 2280 | 100 | Minus |
2R | 25286936 | 2R | 6649292..6649579 | 905..618 | 1395 | 99 | Minus |
2R | 25286936 | 2R | 6651985..6652132 | 622..475 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:45:21 has no hits.
BO05156.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:36 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-PA | 13..903 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:49 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33134-PA | 13..903 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:09 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 638..1531 | 11..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:08 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Debcl-RA | 638..1531 | 11..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:08 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6649291..6649578 | 619..907 | 98 | -> | Minus |
2R | 6651989..6652132 | 475..618 | 100 | -> | Minus |
2R | 6652188..6652649 | 11..474 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:09 Download gff for
BO05156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2536796..2537083 | 619..907 | 98 | -> | Minus |
arm_2R | 2539494..2539637 | 475..618 | 100 | -> | Minus |
arm_2R | 2539693..2540154 | 11..474 | 99 | | Minus |
BO05156.5prime Sequence
887 bp (851 high quality bases) assembled on 2005-12-02
> BO05156.5prime
GAAGTTATCAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGG
CCAAGTTCAAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGC
CGCGGCACCATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGG
CGTCGGTGGAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACG
GACGCTCCCTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCC
TCGCTGGCTAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAAT
GGATATCATCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGC
GGCTGCGACGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGC
AACATCCTGGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGC
ACTGAACAGCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACA
CAAACATATCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGAC
AGCGACATGGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCG
CTCCAGCATCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCG
GCTTTGCCATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGC
CTGATTGACGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCT
GATCGACAACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGG
TCGGCGAATTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCT
GCAGGCGCATATATGGTCTCAAACGTGTGTCGGCGCA
BO05156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33134-PA | 903 | debcl-RA | 1..871 | 17..887 | 4305 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 1724 | CG33134-RA | 625..1496 | 16..887 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6652188..6652614 | 461..887 | 2135 | 100 | Plus |
2R | 25286936 | 2R | 6649278..6649579 | 16..317 | 1480 | 99.3 | Plus |
2R | 25286936 | 2R | 6651985..6652132 | 313..460 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:14:52 has no hits.
BO05156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:37 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:38:51 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33134-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:54:55 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 620..1495 | 12..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:50 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Debcl-RA | 620..1495 | 12..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:50 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6649273..6649578 | 12..316 | 99 | -> | Plus |
2R | 6651989..6652132 | 317..460 | 100 | -> | Plus |
2R | 6652188..6652613 | 461..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:54:55 Download gff for
BO05156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2536778..2537083 | 12..316 | 99 | -> | Plus |
arm_2R | 2539494..2539637 | 317..460 | 100 | -> | Plus |
arm_2R | 2539693..2540118 | 461..886 | 100 | | Plus |
BO05156.complete Sequence
934 bp (934 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629988
> BO05156.complete
GAAGTTATCAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGG
CCAAGTTCAAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGC
CGCGGCACCATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGG
CGTCGGTGGAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACG
GACGCTCCCTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCC
TCGCTGGCTAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAAT
GGATATCATCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGC
GGCTGCGACGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGC
AACATCCTGGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGC
ACTGAACAGCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACA
CAAACATATCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGAC
AGCGACATGGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCG
CTCCAGCATCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCG
GCTTTGCCATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGC
CTGATTGACGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCT
GATCGACAACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGG
TCGGCGAATTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCT
GCAGGCGCATATATGGTCTCAAACGTGTGTCGGCGCATTGGAGGTCAACT
GTATTCGCTGCTGTTCGCAAGCTTTCTAGACCAT
BO05156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 903 | CG33134-PA | 1..900 | 17..916 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 1724 | CG33134-RA | 625..1525 | 16..916 | 4475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6652188..6652643 | 461..916 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 6649278..6649579 | 16..317 | 1480 | 99.3 | Plus |
2R | 25286936 | 2R | 6651985..6652132 | 313..460 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:21 has no hits.
BO05156.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:36 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 1..903 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:24 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 533..1444 | 12..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:48 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 626..1525 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:36 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 533..1444 | 12..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:23 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Debcl-RA | 626..1525 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:23 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6649279..6649578 | 17..316 | 99 | -> | Plus |
2R | 6651989..6652132 | 317..460 | 100 | -> | Plus |
2R | 6652188..6652643 | 461..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:48 Download gff for
BO05156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2536784..2537083 | 17..316 | 99 | -> | Plus |
arm_2R | 2539494..2539637 | 317..460 | 100 | -> | Plus |
arm_2R | 2539693..2540148 | 461..918 | 99 | | Plus |
BO05156.pep Sequence
Translation from 16 to 934
> BO05156.pep
MAPTTSPPPKLAKFKSSSLDHEIYTANRRGTIATASSDWKALRGGVGGGA
GGPGSVPNPSNGRSLHAGGPMTRAASTSSLASSTRTMTNYQEYKMDIINQ
GKCLCGQYIRARLRRAGVLNRKVTQRLRNILDPGSSHVVYEVFPALNSMG
EELERMHPRVYTNISRQLSRAPFGELEDSDMAPMLLNLVAKDLFRSSITW
GKIISIFAVCGGFAIDCVRQGHFDYLQCLIDGLAEIIEDDLVYWLIDNGG
WLGLSRHIRPRVGEFTFLGWLTLFVTISAGAYMVSNVCRRIGGQLYSLLF
ASFLDH
BO05156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-PA | 300 | CG33134-PA | 1..300 | 1..300 | 1572 | 100 | Plus |
Buffy-PA | 299 | CG8238-PA | 88..296 | 96..303 | 523 | 45.5 | Plus |