Clone Sequence Records
BO05161.3prime Sequence
904 bp (818 high quality bases) assembled on 2005-12-02
> BO05161.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTGCCATAGAGAGATGTAGTCCAAAA
TCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTCG
TACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGTC
CAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCTT
CGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGGC
GAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTCC
ACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTCA
GCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAGA
GGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAACT
GCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGTT
GAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAGG
TCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCAG
TGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTTG
TCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAAG
CTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTTG
GACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGCG
ATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGGT
GTATACTTGCGAGTCTTATTTGGCATTGTGCCAGCGGGTTGATTTTGATT
GCCA
BO05161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 150..1035 | 904..19 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 267..1152 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396326..397211 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 06:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 396..225 | 150 | 57.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 399..224 | 136 | 57.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 396..315 | 133 | 65.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 399..225 | 124 | 59.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 399..368 | 124 | 87.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 455..344 | 122 | 58.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 397..315 | 121 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 399..325 | 117 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 399..227 | 116 | 59.6 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 430..363 | 110 | 66.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 399..351 | 110 | 69.4 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 430..363 | 110 | 66.7 | Minus |
BO05161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:18:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:03 Download gff for
BO05161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 151..1038 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:36 Download gff for
BO05161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 268..1158 | 11..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:40 Download gff for
BO05161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 268..1158 | 11..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:40 Download gff for
BO05161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396327..397217 | 11..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:36 Download gff for
BO05161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290360..291250 | 11..903 | 99 | | Minus |
BO05161.5prime Sequence
868 bp (855 high quality bases) assembled on 2005-12-02
> BO05161.5prime
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTAC
BO05161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 118..969 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396177..397028 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 674..845 | 150 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 671..846 | 136 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 674..755 | 133 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 671..845 | 124 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 671..702 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 615..726 | 122 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 673..755 | 121 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 671..745 | 117 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 671..843 | 116 | 59.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 640..707 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 671..719 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 640..707 | 110 | 66.7 | Plus |
BO05161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:18:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:05 Download gff for
BO05161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:51 Download gff for
BO05161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..969 | 11..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:56 Download gff for
BO05161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..969 | 11..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:56 Download gff for
BO05161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396173..397028 | 11..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:51 Download gff for
BO05161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290206..291061 | 11..868 | 99 | | Plus |
BO05161.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629989
> BO05161.complete
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTACGAAGGAGTTCCCCAACAAATATCCACCCACCT
GGATCGTCTGGATCATCTGGACAACGAATTACACACGCACTCCCAACTTC
AGCTAAAATTTGAACCGTACGAACATTTTCAATTAGACGAGGAGGACTGC
ACCCCCGACGACGAGGAGATTTTGGACTACATCTCTCTATGGCAGGAGCA
GGCAAGCTTTCTAGACCAT
BO05161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1038 | CG3827-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 118..1152 | 17..1051 | 5175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396177..397211 | 17..1051 | 5175 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 674..845 | 150 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 671..846 | 136 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 674..755 | 133 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 671..845 | 124 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 671..702 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 615..726 | 122 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 673..755 | 121 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 671..745 | 117 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 671..843 | 116 | 59.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 640..707 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 671..719 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 640..707 | 110 | 66.7 | Plus |
BO05161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:42 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 1..1038 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:31 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..1158 | 11..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:59 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 118..1152 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:42 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..1158 | 11..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:23 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 118..1152 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:23 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396177..397211 | 17..1053 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:59 Download gff for
BO05161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290210..291244 | 17..1053 | 99 | | Plus |
BO05161.pep Sequence
Translation from 16 to 1069
> BO05161.pep
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQASFLD
H
BO05161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-PA | 345 | CG3827-PA | 1..345 | 1..345 | 1800 | 100 | Plus |
l(1)sc-PA | 257 | CG3839-PA | 77..257 | 92..345 | 309 | 38.2 | Plus |
ac-PA | 201 | CG3796-PA | 25..199 | 100..344 | 264 | 35.2 | Plus |
ase-PA | 486 | CG3258-PA | 130..268 | 69..198 | 210 | 41.4 | Plus |