Clone BO05161 Report

Search the DGRC for BO05161

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptsc-RA
Protein status:BO05161.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO05161.3prime Sequence

904 bp (818 high quality bases) assembled on 2005-12-02

> BO05161.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTGCCATAGAGAGATGTAGTCCAAAA
TCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTCG
TACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGTC
CAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCTT
CGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGGC
GAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTCC
ACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTCA
GCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAGA
GGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAACT
GCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGTT
GAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAGG
TCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCAG
TGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTTG
TCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAAG
CTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTTG
GACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGCG
ATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGGT
GTATACTTGCGAGTCTTATTTGGCATTGTGCCAGCGGGTTGATTTTGATT
GCCA

BO05161.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 150..1035 904..19 4405 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 267..1152 904..19 4415 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396326..397211 904..19 4415 99.9 Minus
Blast to na_te.dros performed 2015-02-12 06:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 396..225 150 57.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 399..224 136 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 396..315 133 65.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 399..225 124 59.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 399..368 124 87.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 455..344 122 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 397..315 121 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 399..325 117 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 399..227 116 59.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 430..363 110 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1073..1121 399..351 110 69.4 Minus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 430..363 110 66.7 Minus

BO05161.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:18:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:03 Download gff for BO05161.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 151..1038 16..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:36 Download gff for BO05161.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 268..1158 11..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:40 Download gff for BO05161.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 268..1158 11..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:40 Download gff for BO05161.3prime
Subject Subject Range Query Range Percent Splice Strand
X 396327..397217 11..903 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:36 Download gff for BO05161.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290360..291250 11..903 99   Minus

BO05161.5prime Sequence

868 bp (855 high quality bases) assembled on 2005-12-02

> BO05161.5prime
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTAC

BO05161.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 118..969 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396177..397028 17..868 4260 100 Plus
Blast to na_te.dros performed 2015-02-10 15:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 674..845 150 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 671..846 136 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 674..755 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 671..845 124 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 671..702 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 615..726 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 673..755 121 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 671..745 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 671..843 116 59.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 640..707 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1073..1121 671..719 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 640..707 110 66.7 Plus

BO05161.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:18:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:05 Download gff for BO05161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:51 Download gff for BO05161.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..969 11..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:56 Download gff for BO05161.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..969 11..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:56 Download gff for BO05161.5prime
Subject Subject Range Query Range Percent Splice Strand
X 396173..397028 11..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:51 Download gff for BO05161.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290206..291061 11..868 99   Plus

BO05161.complete Sequence

1069 bp (1069 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629989

> BO05161.complete
GAAGTTATCAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTA
CCATGTCATCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATC
AATTCGGCAACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAG
TCCATTAATTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAA
TTAAGACTCGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCT
GAATCAGTATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGT
AGACCAATCCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTG
TAAAGCAGGTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAA
TCCATAATCACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAA
GATCTCCAAAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGC
TTCAGGATCTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAAC
AATGCAGTCACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAG
TTCGAGCAGCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAA
ACACGATCTCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAG
CAGTTCAATCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGT
GGGCACATCCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAA
ACCAGCAAACCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCC
TTTGATTCAGGCACCTACGAAGGAGTTCCCCAACAAATATCCACCCACCT
GGATCGTCTGGATCATCTGGACAACGAATTACACACGCACTCCCAACTTC
AGCTAAAATTTGAACCGTACGAACATTTTCAATTAGACGAGGAGGACTGC
ACCCCCGACGACGAGGAGATTTTGGACTACATCTCTCTATGGCAGGAGCA
GGCAAGCTTTCTAGACCAT

BO05161.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1038 CG3827-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 118..1152 17..1051 5175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396177..397211 17..1051 5175 100 Plus
Blast to na_te.dros performed 2014-11-28 01:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 674..845 150 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 671..846 136 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 674..755 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 671..845 124 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 671..702 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 615..726 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 673..755 121 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 671..745 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 671..843 116 59.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 640..707 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1073..1121 671..719 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 640..707 110 66.7 Plus

BO05161.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:42 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 1..1038 17..1054 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:31 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..1158 11..1059 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:59 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 118..1152 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:42 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..1158 11..1059 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:23 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
sc-RA 118..1152 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:23 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
X 396177..397211 17..1053 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:59 Download gff for BO05161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 290210..291244 17..1053 99   Plus

BO05161.pep Sequence

Translation from 16 to 1069

> BO05161.pep
MKNNNNTTKSTTMSSSVLSTNETFPTTINSATKIFRYQHIMPAPSPLIPG
GNQNQPAGTMPIKTRKYTPRGMALTRCSESVSSLSPGSSPAPYNVDQSQS
VQRRNARERNRVKQVNNSFARLRQHIPQSIITDLTKGGGRGPHKKISKVD
TLRIAVEYIRRLQDLVDDLNGGSNIGANNAVTQLQLCLDESSSHSSSSST
CSSSGHNTYYQNTISVSPLQQQQQLQRQQFNHQPLTALSLNTNLVGTSVP
GGDAGCVSTSKNQQTCHSPTSSFNSSMSFDSGTYEGVPQQISTHLDRLDH
LDNELHTHSQLQLKFEPYEHFQLDEEDCTPDDEEILDYISLWQEQASFLD
H

BO05161.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
sc-PA 345 CG3827-PA 1..345 1..345 1800 100 Plus
l(1)sc-PA 257 CG3839-PA 77..257 92..345 309 38.2 Plus
ac-PA 201 CG3796-PA 25..199 100..344 264 35.2 Plus
ase-PA 486 CG3258-PA 130..268 69..198 210 41.4 Plus