Clone BO05162 Report

Search the DGRC for BO05162

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptgcm2-RA
Protein status:BO05162.pep: validated full length
Sequenced Size:1852

Clone Sequence Records

BO05162.3prime Sequence

845 bp (842 high quality bases) assembled on 2005-12-02

> BO05162.3prime
ATGGTCTAGAAAGCTTGCATGGGTGACCGATGGGGCTAGGCCTGTAGCTG
CTGCTGGGTGGTGCAAGTGGTGGTGATGGTGATGGTGGTACGTCAGCGTG
GGCGGTGGTGGTGGAGGCGGTGGATGGCCAGGGGGCGCGGCCACTGTCGG
CGCAGTGGATCCTCCGGCAGTGGCAAATCCACCTGCTACCGCCATTTGTT
GCTCGTAGCTGGTGTAGTGATCGTAGTAGCCGCCGTATCCGACTTCCAGG
CCATTTCCGGTTGCAGTATTTCCTGGTGCCGTAGTAGTTCCTGTGTCGAA
ATAGCTGACTCCATTATAGCCACTACTGCTCTCGTAGTAGTGATGTCCCG
CTGTCTGATTTCCACCGAACTGTTGGTGGCTCTGCTGCTGCTGGTGGTGG
TGCTGTTGCATTTCGTACTCCGCCTTGGGGCTATAGTAGTAATCGTAGTT
GTCCTCCACATACGGCTGCGTCTCCACGGTGGCATTGTACTTAATGGTGG
GTCCCGGTTCGGCCTTGCAGCTGATCTCCTCCTGACCACCGCCACCACCC
AAATGCTTGATCTGCGAGTAGTTGATGAACTCCGGTTCCGGAGTGGCCAG
TTGCGGGCTGGAATCATAGGCTACTGCCTGGCATTGTGTGTGTCCGTGCA
CGGGAACACCCATCGCAAAGCTGTTCCCGCTGGAGGATTGCTGGTATGCG
GCCAGTTCCGAAATGCTGCAGGCGTAGGGCAAACTGGGAGATTTACTAGG
TGCCGCGGTGGCCGCCGCTGGAGTTGCATGGTAGATGGGATAGTTATAGG
TGATGTGCTGGTGGTTGACCGTAAACACATTAGCTGCCGTCTCGC

BO05162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3858-PA 1821 gcm2-RA 992..1818 845..19 4135 100 Minus
CG3858-PB 1842 gcm2-RB 1013..1839 845..19 4135 100 Minus
CG32397-PA 5832 CG32397-RA 478..509 405..374 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 1328..2154 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611706..9612532 845..19 4135 100 Minus
Blast to na_te.dros performed 2015-02-11 02:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1181 417..286 180 65.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7010 408..192 177 59.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2662 409..68 167 53.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2856 409..23 144 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..7123 409..36 144 55.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2548 419..191 138 56 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6859 413..270 138 60.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2393..2476 452..371 127 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1580 409..370 119 77.5 Minus
roo 9092 roo DM_ROO 9092bp 1041..1134 413..324 117 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2527 408..274 114 59 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6874 419..370 114 71.7 Minus

BO05162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:47 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-PB 1013..1842 16..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:06 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3858-PB 1013..1842 16..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:22 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1328..2158 15..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:19 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1328..2158 15..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:19 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9611706..9612536 15..845 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:22 Download gff for BO05162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9611706..9612536 15..845 99   Minus

BO05162.5prime Sequence

904 bp (816 high quality bases) assembled on 2005-12-02

> BO05162.5prime
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGC

BO05162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3858-PA 1821 gcm2-RA 1..888 17..904 4440 100 Plus
CG3858-PB 1842 gcm2-RB 33..909 28..904 4385 100 Plus
CG12245-PA 1515 gcm-RA 226..284 347..405 170 91.5 Plus
CG12245-PA 1515 gcm-RA 433..470 557..594 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 337..1224 17..904 4440 100 Plus
gcm-RB 2173 CG12245-RB 288..659 256..630 375 74.8 Plus
gcm-RA 1911 CG12245-RA 288..659 256..630 375 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9610602..9611346 28..772 3725 100 Plus
2L 23513712 2L 9611410..9611502 771..863 465 100 Plus
2L 23513712 2L 9581198..9581458 516..256 285 73.9 Minus
2L 23513712 2L 9611561..9611602 863..904 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 14:16:54 has no hits.

BO05162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:47 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:08 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3858-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:47 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..1224 17..904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:03 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..1224 17..904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:03 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9610602..9611346 27..772 99 -> Plus
2L 9611412..9611502 773..863 100 -> Plus
2L 9611562..9611602 864..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:47 Download gff for BO05162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9610602..9611346 27..772 99 -> Plus
arm_2L 9611412..9611502 773..863 100 -> Plus
arm_2L 9611562..9611602 864..904 100   Plus

BO05162.complete Sequence

1852 bp (1852 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629990

> BO05162.complete
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGCTACCTGGATGACAGCACCACGGCGAGGAGCCATCAGTTGTCACAAT
CCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCG
GCACCCTGCGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACAT
CACCTATAACTATCCCATCTACCATGCAACTCCAGCGGCGGCCACCGCGG
CACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGCATTTCGGAACTG
GCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCC
CGTGCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGC
AACTGGCCACTCCGGAACCGGAGTTCATCAACTACTCGCAGATCAAGCAT
TTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGCTGCAAGGCCGAACCGGG
ACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGAGG
ACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAATGCAACAG
CACCACCACCAGCAGCAGCAGAGCCACCAACAGTTCGGTGGAAATCAGAC
AGCGGGACATCACTACTACGAGAGCAGTAGTGGCTATAATGGAGTCAGCT
ATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAAT
GGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGA
GCAACAAATGGCGGTAGCAGGTGGATTTGCCACTGCCGGAGGATCCACTG
CGCCGACAGTGGCCGCGCCCCCTGGCCATCCACCGCCTCCACCACCACCG
CCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACCCAGC
AGCAGCTACAGGCCTAGCCCCATCGGTCACCCATGCAAGCTTTCTAGACC
AT

BO05162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 1821 CG3858-PA 1..1818 17..1834 9090 100 Plus
gcm-RB 1515 CG12245-PB 135..506 256..630 325 73.1 Plus
gcm-RA 1515 CG12245-PA 135..506 256..630 325 73.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-RA 2328 CG3858-RA 337..2154 17..1834 9090 100 Plus
gcm-RB 2173 CG12245-RB 288..659 256..630 325 73.1 Plus
gcm-RA 1911 CG12245-RA 288..659 256..630 325 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9611561..9612532 863..1834 4860 100 Plus
2L 23513712 2L 9610602..9611346 28..772 3725 100 Plus
2L 23513712 2L 9611410..9611502 771..863 465 100 Plus
2L 23513712 2L 9581198..9581458 516..256 285 73.9 Minus
Blast to na_te.dros performed 2014-11-26 15:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1181 1436..1567 180 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..7010 1445..1661 177 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2662 1444..1785 167 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2856 1444..1830 144 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..7123 1444..1817 144 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6859 1440..1583 138 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2548 1434..1662 138 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2393..2476 1401..1482 127 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1580 1444..1483 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1041..1134 1440..1529 117 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2527 1445..1579 114 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6874 1434..1483 114 71.7 Plus

BO05162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:48 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 1..1821 17..1837 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:53 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 420..2241 17..1838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:09 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..2154 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:49 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 420..2241 17..1838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:17 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
gcm2-RA 337..2154 17..1836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:17 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9610602..9611346 28..772 100 -> Plus
2L 9611412..9611502 773..863 100 -> Plus
2L 9611562..9612532 864..1836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:09 Download gff for BO05162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9610602..9611346 28..772 100 -> Plus
arm_2L 9611412..9611502 773..863 100 -> Plus
arm_2L 9611562..9612532 864..1836 99   Plus

BO05162.pep Sequence

Translation from 16 to 1852

> BO05162.pep
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTHASFLDH

BO05162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
gcm2-PA 606 CG3858-PA 1..606 1..606 3331 100 Plus
gcm-PB 504 CG12245-PB 18..230 53..260 637 59.2 Plus
gcm-PA 504 CG12245-PA 18..230 53..260 637 59.2 Plus