Clone Sequence Records
BO05162.3prime Sequence
845 bp (842 high quality bases) assembled on 2005-12-02
> BO05162.3prime
ATGGTCTAGAAAGCTTGCATGGGTGACCGATGGGGCTAGGCCTGTAGCTG
CTGCTGGGTGGTGCAAGTGGTGGTGATGGTGATGGTGGTACGTCAGCGTG
GGCGGTGGTGGTGGAGGCGGTGGATGGCCAGGGGGCGCGGCCACTGTCGG
CGCAGTGGATCCTCCGGCAGTGGCAAATCCACCTGCTACCGCCATTTGTT
GCTCGTAGCTGGTGTAGTGATCGTAGTAGCCGCCGTATCCGACTTCCAGG
CCATTTCCGGTTGCAGTATTTCCTGGTGCCGTAGTAGTTCCTGTGTCGAA
ATAGCTGACTCCATTATAGCCACTACTGCTCTCGTAGTAGTGATGTCCCG
CTGTCTGATTTCCACCGAACTGTTGGTGGCTCTGCTGCTGCTGGTGGTGG
TGCTGTTGCATTTCGTACTCCGCCTTGGGGCTATAGTAGTAATCGTAGTT
GTCCTCCACATACGGCTGCGTCTCCACGGTGGCATTGTACTTAATGGTGG
GTCCCGGTTCGGCCTTGCAGCTGATCTCCTCCTGACCACCGCCACCACCC
AAATGCTTGATCTGCGAGTAGTTGATGAACTCCGGTTCCGGAGTGGCCAG
TTGCGGGCTGGAATCATAGGCTACTGCCTGGCATTGTGTGTGTCCGTGCA
CGGGAACACCCATCGCAAAGCTGTTCCCGCTGGAGGATTGCTGGTATGCG
GCCAGTTCCGAAATGCTGCAGGCGTAGGGCAAACTGGGAGATTTACTAGG
TGCCGCGGTGGCCGCCGCTGGAGTTGCATGGTAGATGGGATAGTTATAGG
TGATGTGCTGGTGGTTGACCGTAAACACATTAGCTGCCGTCTCGC
BO05162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3858-PA | 1821 | gcm2-RA | 992..1818 | 845..19 | 4135 | 100 | Minus |
CG3858-PB | 1842 | gcm2-RB | 1013..1839 | 845..19 | 4135 | 100 | Minus |
CG32397-PA | 5832 | CG32397-RA | 478..509 | 405..374 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 1328..2154 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9611706..9612532 | 845..19 | 4135 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1181 | 417..286 | 180 | 65.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7010 | 408..192 | 177 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2662 | 409..68 | 167 | 53.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2856 | 409..23 | 144 | 55.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..7123 | 409..36 | 144 | 55.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2548 | 419..191 | 138 | 56 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6859 | 413..270 | 138 | 60.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2476 | 452..371 | 127 | 63.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1580 | 409..370 | 119 | 77.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1134 | 413..324 | 117 | 62.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2527 | 408..274 | 114 | 59 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6874 | 419..370 | 114 | 71.7 | Minus |
BO05162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:47 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-PB | 1013..1842 | 16..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:06 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3858-PB | 1013..1842 | 16..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:49:22 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1328..2158 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:19 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1328..2158 | 15..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:19 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9611706..9612536 | 15..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:49:22 Download gff for
BO05162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9611706..9612536 | 15..845 | 99 | | Minus |
BO05162.5prime Sequence
904 bp (816 high quality bases) assembled on 2005-12-02
> BO05162.5prime
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGC
BO05162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3858-PA | 1821 | gcm2-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
CG3858-PB | 1842 | gcm2-RB | 33..909 | 28..904 | 4385 | 100 | Plus |
CG12245-PA | 1515 | gcm-RA | 226..284 | 347..405 | 170 | 91.5 | Plus |
CG12245-PA | 1515 | gcm-RA | 433..470 | 557..594 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 337..1224 | 17..904 | 4440 | 100 | Plus |
gcm-RB | 2173 | CG12245-RB | 288..659 | 256..630 | 375 | 74.8 | Plus |
gcm-RA | 1911 | CG12245-RA | 288..659 | 256..630 | 375 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9610602..9611346 | 28..772 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 771..863 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581198..9581458 | 516..256 | 285 | 73.9 | Minus |
2L | 23513712 | 2L | 9611561..9611602 | 863..904 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:16:54 has no hits.
BO05162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:18:47 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:08 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3858-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:47 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..1224 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:03 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..1224 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:03 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9610602..9611346 | 27..772 | 99 | -> | Plus |
2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
2L | 9611562..9611602 | 864..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:47 Download gff for
BO05162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9610602..9611346 | 27..772 | 99 | -> | Plus |
arm_2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
arm_2L | 9611562..9611602 | 864..904 | 100 | | Plus |
BO05162.complete Sequence
1852 bp (1852 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629990
> BO05162.complete
GAAGTTATCAGTCGACATGGTTGTTATAAATGGCTACAGCTTCAAGACGC
AGCAACTTCTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTC
CAGCCCCAAAGTCAGAGTACGCATTCGGTGCATCCGGGTCCAAGTCCTGG
TCAACAGCAGGCGGGTGGCTCCATGACCATGCCGTCGTCGTCGACGGGCA
AGGGAAAACGGGAGTGGGACATCAATGATGCCATTGTGCCACATGTGCCG
GACCAGGAGTTCGACGAGTTCAACGAGTGGAGCGACGGGCATGTGAGGCA
CATCTATTCGCTGCACAACGAGGAGGCCAAGAAGCACATTTCCGGCTGGG
CCATGCGCAACACGAACAACCACAACGTGAACATTCTGAAGAAGAGCTGC
CTGGGCGTCCTGGTCTGCTCCCAACACTGCACCCTGCCCAACGGATCCAA
GATCAACCTGCGCCCAGCCATTTGCGACAAAGCCCGGCGGAAGCAGGAGG
GCAAGGCGTGTCCCAACAAAAGTTGTCGTGGCGGTAGACTAGAGATTAAA
CCGTGTCGCGGTCACTGCGGCTATCCGGTGACCCACTTCTGGCGGCACTC
CGGCAATGCCATCTTTTTTCAGGCCAAGGGAGTGCATGATCACCTGCGTC
CGGATCCGAAGAACTCCAGTGTTTCCAAGCGGGCCTTTGGACGTGTGCCG
CTGGCTGGAAAGTCAGCCAACGGATCAGTCGCCAAGAAGTCGGTCATTGC
GGGTCTGGTCAAGCAGGCGAAGCAACAACACAGTCTGATTAGCAAGGTTC
TTAAGCGTCCTGCTGTCAGCAATCCTCTGGCTCACACCGCATTGGATATA
TATCAGTATAATGCCTGTGGCAAGTGCGCCGGTTATAGCCACTGCACTTG
CAGCTACCTGGATGACAGCACCACGGCGAGGAGCCATCAGTTGTCACAAT
CCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCG
GCACCCTGCGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACAT
CACCTATAACTATCCCATCTACCATGCAACTCCAGCGGCGGCCACCGCGG
CACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGCATTTCGGAACTG
GCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCC
CGTGCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGC
AACTGGCCACTCCGGAACCGGAGTTCATCAACTACTCGCAGATCAAGCAT
TTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGCTGCAAGGCCGAACCGGG
ACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGAGG
ACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAATGCAACAG
CACCACCACCAGCAGCAGCAGAGCCACCAACAGTTCGGTGGAAATCAGAC
AGCGGGACATCACTACTACGAGAGCAGTAGTGGCTATAATGGAGTCAGCT
ATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAAT
GGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGA
GCAACAAATGGCGGTAGCAGGTGGATTTGCCACTGCCGGAGGATCCACTG
CGCCGACAGTGGCCGCGCCCCCTGGCCATCCACCGCCTCCACCACCACCG
CCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACCCAGC
AGCAGCTACAGGCCTAGCCCCATCGGTCACCCATGCAAGCTTTCTAGACC
AT
BO05162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 1821 | CG3858-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
gcm-RB | 1515 | CG12245-PB | 135..506 | 256..630 | 325 | 73.1 | Plus |
gcm-RA | 1515 | CG12245-PA | 135..506 | 256..630 | 325 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-RA | 2328 | CG3858-RA | 337..2154 | 17..1834 | 9090 | 100 | Plus |
gcm-RB | 2173 | CG12245-RB | 288..659 | 256..630 | 325 | 73.1 | Plus |
gcm-RA | 1911 | CG12245-RA | 288..659 | 256..630 | 325 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9611561..9612532 | 863..1834 | 4860 | 100 | Plus |
2L | 23513712 | 2L | 9610602..9611346 | 28..772 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 9611410..9611502 | 771..863 | 465 | 100 | Plus |
2L | 23513712 | 2L | 9581198..9581458 | 516..256 | 285 | 73.9 | Minus |
Blast to na_te.dros performed 2014-11-26 15:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1058..1181 | 1436..1567 | 180 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..7010 | 1445..1661 | 177 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2662 | 1444..1785 | 167 | 53.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2856 | 1444..1830 | 144 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..7123 | 1444..1817 | 144 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6859 | 1440..1583 | 138 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2548 | 1434..1662 | 138 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2476 | 1401..1482 | 127 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1580 | 1444..1483 | 119 | 77.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1134 | 1440..1529 | 117 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2527 | 1445..1579 | 114 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6874 | 1434..1483 | 114 | 71.7 | Plus |
BO05162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:48 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 1..1821 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:53 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 420..2241 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:09 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..2154 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:49 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 420..2241 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:17 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gcm2-RA | 337..2154 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:17 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9610602..9611346 | 28..772 | 100 | -> | Plus |
2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
2L | 9611562..9612532 | 864..1836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:09 Download gff for
BO05162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9610602..9611346 | 28..772 | 100 | -> | Plus |
arm_2L | 9611412..9611502 | 773..863 | 100 | -> | Plus |
arm_2L | 9611562..9612532 | 864..1836 | 99 | | Plus |
BO05162.pep Sequence
Translation from 16 to 1852
> BO05162.pep
MVVINGYSFKTQQLLTQQPDHSQLTQFVQPQSQSTHSVHPGPSPGQQQAG
GSMTMPSSSTGKGKREWDINDAIVPHVPDQEFDEFNEWSDGHVRHIYSLH
NEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTLPNGSKINLRP
AICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF
FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANGSVAKKSVIAGLVKQ
AKQQHSLISKVLKRPAVSNPLAHTALDIYQYNACGKCAGYSHCTCSYLDD
STTARSHQLSQSSNYGTNSWPLSGSESSAPCETAANVFTVNHQHITYNYP
IYHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVPVHGHT
QCQAVAYDSSPQLATPEPEFINYSQIKHLGGGGGQEEISCKAEPGPTIKY
NATVETQPYVEDNYDYYYSPKAEYEMQQHHHQQQQSHQQFGGNQTAGHHY
YESSSGYNGVSYFDTGTTTAPGNTATGNGLEVGYGGYYDHYTSYEQQMAV
AGGFATAGGSTAPTVAAPPGHPPPPPPPPTLTYHHHHHHHLHHPAAATGL
APSVTHASFLDH
BO05162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gcm2-PA | 606 | CG3858-PA | 1..606 | 1..606 | 3331 | 100 | Plus |
gcm-PB | 504 | CG12245-PB | 18..230 | 53..260 | 637 | 59.2 | Plus |
gcm-PA | 504 | CG12245-PA | 18..230 | 53..260 | 637 | 59.2 | Plus |