Clone BO05174 Report

Search the DGRC for BO05174

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptPoxn-RA
Protein status:BO05174.pep: validated full length
Sequenced Size:1309

Clone Sequence Records

BO05174.3prime Sequence

952 bp (767 high quality bases) assembled on 2005-12-02

> BO05174.3prime
ATGGTCTAGAAAGCTTGCGTTGACTACCTCAACGCTGTCTTCCTCCTCTT
GCTCCTCCTCCGCCTCGGCGGGATCCTCATCCTCTGGCGTTTCCAAGGGT
GGAGCAACTGGACTATCCTGGCTGCTCTCGCAGGAACTGGATTCCAGGCA
CTCCAGACGGTTGCTATCCAGTCGGAGTCGTTTCTCCGGCTTCTTGAGCA
GTTCTTCGATGGAGTACGGATTCCGCTTGCGGCTGTGGCTGAGTGTCGAT
CCTGGTGAAGCCTCTGGAGCTGATCCGGCGCCATTTCCACCTCCAGAAGC
GGTTAGTGAGAGTGCCGCCGGGGAGGATTTACCGGAGTCGCAGTCGCTAA
GCGCATCGCCAGCCGCTCCGGGAGTCGAAAGATCGATGGAGCTCTCCGAC
TTGGTGAAACCACCCAAGGCGGATGTGGAAGATGCGGCCGCCGCTGCCAT
GGCATGGGGCAAATAGCCACCGGCATAGGGCAGGAATTGACCACCCGACG
CAGCCGCCTGGGCCTGAATGTGAGCCTGGGTGTAGTAGAGCAGGGAGGGA
TTCCACAGCCAGTGCTTGTGTAGAGCGGAGTAACTCAAGTCCAGGCCCGA
AACATTGGGGTTCAGGCCGTGACTGTGGCCATGTCCCATGCTGGGCGGCA
TTTTGGGAGCGGGTTTAATTGGCATCTCGCCGGCGGAGTTCATCATCAAC
GCCGGCGGCTTGGCGTAGCGTGCGATGGAGGGCGTGGCTGCCGGTGTGGG
CGGAGCCACGGTTACCGGAGGAGGCGGAGCTTGGCCGCCATATCCATTCG
ATGGACCACTGCCCGCCTGATGAGCCGCTGCCGCTGCCGCCGCTGCAGCA
GCTGCGGCATTCTGCTGACTGGATGTCATCTCATCGGTCCACAGACCGCT
GTTGCGCAGAATCGGGTTGATGGAGCTGATCAAGGGCACGAAACTGGGAT
CG

BO05174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8246-PA 1278 Poxn-RA 342..1275 952..19 4570 99.5 Minus
CG1070-PB 2475 Alh-RB 1779..1805 853..827 135 100 Minus
CG1070-PC 2931 Alh-RC 1779..1805 853..827 135 100 Minus
CG1070-PD 3972 Alh-RD 3276..3302 853..827 135 100 Minus
CG1070-PA 4131 Alh-RA 3435..3461 853..827 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 1185..2118 952..19 4610 99.6 Minus
Poxn-RA 2320 CG8246-RA 1047..1980 952..19 4610 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827033..15827966 19..952 4610 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 05:45:50 has no hits.

BO05174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:02 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-PA 342..1278 15..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:29 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8246-PA 342..1278 15..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:15 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1047..1983 15..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:44 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1047..1983 15..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:44 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15827029..15827966 15..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:15 Download gff for BO05174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11714534..11715471 15..952 99   Plus

BO05174.5prime Sequence

941 bp (835 high quality bases) assembled on 2005-12-02

> BO05174.5prime
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGGTCATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCACATCCGCCTTGGGTGG
TTTCACCAAGTCGGAGAGCTCCATCGATCTTTCGACTCCCC

BO05174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8246-PA 1278 Poxn-RA 1..803 17..819 4015 100 Plus
CG8246-PA 1278 Poxn-RA 807..924 823..940 590 100 Plus
CG1070-PB 2475 Alh-RB 1779..1805 457..483 135 100 Plus
CG1070-PC 2931 Alh-RC 1779..1805 457..483 135 100 Plus
CG1070-PD 3972 Alh-RD 3276..3302 457..483 135 100 Plus
CG1070-PA 4131 Alh-RA 3435..3461 457..483 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 843..1767 16..940 4580 99.8 Plus
Poxn-RA 2320 CG8246-RA 705..1629 16..940 4580 99.8 Plus
gsb-RA 1649 CG3388-RA 344..454 134..244 210 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827384..15828075 940..249 3415 99.6 Minus
2R 25286936 2R 15830314..15830457 171..28 720 100 Minus
2R 25286936 2R 15830166..15830246 250..170 405 100 Minus
2R 25286936 2R 25063338..25063448 134..244 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:44:05 has no hits.

BO05174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:03 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-PA 1..924 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:31 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8246-PA 1..924 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:41 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 698..1629 5..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:42 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 698..1629 5..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:42 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15830315..15830455 30..170 100 <- Minus
2R 15830166..15830245 171..250 100 <- Minus
2R 15827383..15828073 251..941 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:41 Download gff for BO05174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11717820..11717960 30..170 100 <- Minus
arm_2R 11714888..11715578 251..941 99 <- Minus
arm_2R 11717671..11717750 171..250 100 <- Minus

BO05174.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629991

> BO05174.complete
GAAGTTATCAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAAT
TGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGG
AGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCG
CCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCT
ATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAG
CAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGA
GAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGC
GCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATT
CTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAA
TGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCA
GTGGTCCATCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACC
GTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAA
GCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCG
CTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAAC
CCCAATGTTTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTG
GCTGTGGAATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCC
AGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCTATTTG
CCCCATGCCATGGCAGCGGCGGCCGCATCTTCCACATCCGCCTTGGGTGG
TTTCACCAAGTCGGAGAGCTCCATCGATCTTTCGACTCCCGGAGCGGCTG
GCGATGCGCTTAGCGACTGCGACTCCGGTAAATCCTCCCCGGCGGCACTC
TCACTAACCGCTTCTGGAGGTGGAAATGGCGCCGGATCAGCTCCAGAGGC
TTCACCAGGATCGACACTCAGCCACAGCCGCAAGCGGAATCCGTACTCCA
TCGAAGAACTGCTCAAGAAGCCGGAGAAACGACTCCGACTGGATAGCAAC
CGTCTGGAGTGCCTGGAATCCAGTTCCTGCGAGAGCAGCCAGGATAGTCC
AGTTGCTCCACCCTTGGAAACGCCAGAGGATGAGGATCCCGCCGAGGCGG
AGGAGGAGCAAGAGGAGGAAGACAGCGTTGAGGTAGTCAACGCAAGCTTT
CTAGACCAT

BO05174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 1278 CG8246-PB 1..1275 17..1291 6375 100 Plus
Poxn-RA 1278 CG8246-PA 1..1275 17..1291 6375 100 Plus
gsb-RA 1284 CG3388-PA 160..270 134..244 210 79.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-RB 2458 CG8246-RB 843..2118 16..1291 6380 100 Plus
Poxn-RA 2320 CG8246-RA 705..1980 16..1291 6380 100 Plus
gsb-RA 1649 CG3388-RA 344..454 134..244 210 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15827033..15828075 1291..249 5215 100 Minus
2R 25286936 2R 15830314..15830457 171..28 720 100 Minus
2R 25286936 2R 15830166..15830246 250..170 405 100 Minus
2R 25286936 2R 25063338..25063448 134..244 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 12:47:29 has no hits.

BO05174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:31 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 1..1278 17..1295 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:17 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 556..1841 5..1295 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:59 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 706..1980 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:31 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 556..1841 5..1295 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:41 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
Poxn-RA 706..1980 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:41 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15830315..15830457 28..170 100   Minus
2R 15827031..15828073 251..1293 99 <- Minus
2R 15830166..15830245 171..250 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:59 Download gff for BO05174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11714536..11715578 251..1293 99 <- Minus
arm_2R 11717671..11717750 171..250 100 <- Minus
arm_2R 11717820..11717962 28..170 100   Minus

BO05174.pep Sequence

Translation from 16 to 1309

> BO05174.pep
MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVS
HGCVSKILTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMF
AWEIREQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAA
AAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIARYAKPPALM
MNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPS
LLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSE
SSIDLSTPGAAGDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGST
LSHSRKRNPYSIEELLKKPEKRLRLDSNRLECLESSSCESSQDSPVAPPL
ETPEDEDPAEAEEEQEEEDSVEVVNASFLDH

BO05174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Poxn-PB 425 CG8246-PB 1..425 1..425 2208 100 Plus
Poxn-PA 425 CG8246-PA 1..425 1..425 2208 100 Plus
sv-PG 628 CG11049-PG 175..344 5..175 449 55.6 Plus
sv-PC 647 CG11049-PC 175..344 5..175 449 55.6 Plus
sv-PI 491 CG11049-PI 17..188 3..175 447 54.9 Plus