Clone Sequence Records
BO05180.5prime Sequence
510 bp (509 high quality bases) assembled on 2005-09-08
> BO05180.5prime
CAGTCGACATGTCCATGCAAATACGCATCAAGTGCCGCGAGATGTTGGCA
ACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGATCCGGATGA
CATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAACGGCTGCA
AGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACTTGCGCGAT
CCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAAATAACGCC
CGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGATGATATGA
AGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGGCACAGATG
GCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAACGCTGCGA
CAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGAGCCCATTA
TCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGAGCGCAAGC
TTTCTAGACC
BO05180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-PA | 489 | CG8117-RA | 1..486 | 9..494 | 2405 | 99.7 | Plus |
| CG3710-PA | 942 | TfIIS-RA | 703..754 | 267..318 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-RA | 770 | CG8117-RA | 69..555 | 8..494 | 2420 | 99.8 | Plus |
| TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 262..491 | 275 | 75.5 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 262..491 | 275 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15644290..15644776 | 8..494 | 2420 | 99.8 | Plus |
| 2L | 23513712 | 2L | 15059619..15059735 | 378..262 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:21:36 has no hits.
BO05180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:11 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-PA | 1..489 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:42 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-PA | 1..489 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:22 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:17:36 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:17:36 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15644286..15644776 | 1..494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:22 Download gff for
BO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15538319..15538809 | 1..494 | 99 | | Plus |
BO05180.3prime Sequence
518 bp (517 high quality bases) assembled on 2005-12-02
> BO05180.3prime
ATGGTCTAGAAAGCTTGCGCTCTTCCAGCGGTTGCCGCACTCGTCGCATA
TCACAAAGGTGATAATGGGCTCGTCACCATCACGGATATGCAATTGGCTG
CAGTTGCGTTTGTCGCAGCGTTCGCATTTGAACTGATCCGTCTTGGTGCC
CTGAACCTTGGCCATCTGTGCCGCATTGATCGAGTCCTGAACGTACTTCT
GGCGCATCTGCTTCATATCATCGCTGGCCATCTCCTCGGGCGTCATCTTG
GATAACTCTTCGGGCGTTATTTGACCTAATAGGAACTTCTGGCGCAGCTC
TGGATTCTTCGGATCGCGCAAGTTGGCCAAACGCGAACGTATGCGATTTT
TGTACTTCACCTTGCAGCCGTTCAAGTCGCCGTAAATTGCGTCCTCCAGT
TTAGCGGCCATGTCATCCGGATCGCCACATCCTGGTGGCATGTTGCCCGA
TTTCAATGCGGTTGCCAACATCTCGCGGCACTTGATGCGTATTTCCATGG
ACATGTCGACTGATAACT
BO05180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-PA | 489 | CG8117-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG3710-PA | 942 | TfIIS-RA | 703..754 | 246..195 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-RA | 770 | CG8117-RA | 69..555 | 505..19 | 2435 | 100 | Minus |
| TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 251..22 | 275 | 75.5 | Minus |
| TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 251..22 | 275 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15644290..15644776 | 505..19 | 2435 | 100 | Minus |
| 2L | 23513712 | 2L | 15059619..15059735 | 135..251 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:46:39 has no hits.
BO05180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:10 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:41 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:07 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 60..555 | 19..516 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:36 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 60..555 | 19..516 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:36 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15644281..15644776 | 19..516 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:07 Download gff for
BO05180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15538314..15538809 | 19..516 | 98 | | Minus |
BO05180.complete Sequence
520 bp (520 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629992
> BO05180.complete
GAAGTTATCAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGA
TGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGAT
CCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAA
CGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACT
TGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAA
ATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGA
TGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGG
CACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAA
CGCTGCGACAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGA
GCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGA
GCGCAAGCTTTCTAGACCAT
BO05180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-RA | 489 | CG8117-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
| TfIIS-RB | 942 | CG3710-PB | 698..814 | 270..386 | 270 | 82.1 | Plus |
| TfIIS-RA | 942 | CG3710-PA | 698..814 | 270..386 | 270 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-RA | 770 | CG8117-RA | 69..555 | 16..502 | 2435 | 100 | Plus |
| TfIIS-RB | 1773 | CG3710-RB | 957..1073 | 270..386 | 270 | 82.1 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 957..1073 | 270..386 | 270 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15644290..15644776 | 16..502 | 2435 | 100 | Plus |
| 2L | 23513712 | 2L | 15059619..15059735 | 386..270 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:27:23 has no hits.
BO05180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:32 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:19 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 60..555 | 5..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:20 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 70..555 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:33 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:51 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8117-RA | 70..555 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:51 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15644291..15644776 | 17..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:20 Download gff for
BO05180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15538324..15538809 | 17..504 | 99 | | Plus |
BO05180.pep Sequence
Translation from 16 to 520
> BO05180.pep
MSMEIRIKCREMLATALKSGNMPPGCGDPDDMAAKLEDAIYGDLNGCKVK
YKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQM
RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNCSQLHIRDGDEPIITF
VICDECGNRWKSASFLDH
BO05180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8117-PA | 162 | CG8117-PA | 1..162 | 1..162 | 864 | 100 | Plus |
| TfIIS-PB | 313 | CG3710-PB | 149..311 | 1..161 | 576 | 63.8 | Plus |
| TfIIS-PA | 313 | CG3710-PA | 149..311 | 1..161 | 576 | 63.8 | Plus |
