Clone Sequence Records
BO05181.3prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-02
> BO05181.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCAGACGTTCTCCTCGTCCTCGC
TGTCGTCCTCCATCTTGGTCACATCGATGGTGGTCAACAGGGAATGGCTG
GTCGAACTGGTATTGGAGTTGGGACTGCCGGCGTAGCTGGAGATTGGCGA
AATGGGCACGGAGTAGGCATCCCGATTGGCGATGTGCACGGAGAGTGGAG
CGGTCACCGGCAAGACTTCCTTTTCTGCTGGCTGGATCTGATTGAGGCGC
TGTCCCAGGTGGGTCATTAGCTGAGTGCCTAGGCTGACATTCATGCCGGG
CAGCTGGGAGAGTGAACGGGAGACCTCATTGACGGCATGGATGTAGCCGG
AACGGAAGCCCTCCGCCGGAGTCAAGCTCTCATCGCCGGAAGCCCGCTTG
TGCTGACGCTGCTGCTTCATCTTTTGCAAATGGGTGACGGTAAGTTCCAG
GATATCGGCTTTCTCCAAACGGGTGACGTGCTCGCCCTCGGACTCCAAGG
TGGCAACCATAAGATCCTTTAGCTCGTCCAGGCACTTGTTGATTCTGGCA
CGACGCTTCCTCTCCAGCATGGGCTTCATCACCTTGCGGTACTGATAGGT
CTTGGACATCTCGGACATTTGTAGCGACGACATGTCGACTGATAACT
BO05181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8333-PA | 618 | HLHmgamma-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
CG8361-PA | 561 | HLHm7-RA | 15..116 | 613..512 | 360 | 94.1 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 612..515 | 340 | 93.8 | Minus |
CG8346-PA | 675 | HLHm3-RA | 10..50 | 612..572 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 633..19 | 3075 | 100 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 612..437 | 460 | 84.7 | Minus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 613..507 | 430 | 93.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000557 | 633..19 | 3075 | 100 | Minus |
3R | 32079331 | 3R | 26005703..26005878 | 437..612 | 460 | 84.1 | Plus |
3R | 32079331 | 3R | 26022029..26022195 | 612..446 | 430 | 83.8 | Minus |
3R | 32079331 | 3R | 26037177..26037283 | 613..507 | 430 | 93.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:20:15 has no hits.
BO05181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:12 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:44 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:58 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..707 | 19..641 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:11 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..707 | 19..641 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:11 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999935..26000556 | 20..641 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:58 Download gff for
BO05181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825657..21826278 | 20..641 | 99 | -> | Minus |
BO05181.5prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-02
> BO05181.5prime
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACC
BO05181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8333-PA | 618 | HLHmgamma-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
CG8361-PA | 561 | HLHm7-RA | 15..116 | 37..138 | 360 | 94.1 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 38..135 | 340 | 93.8 | Plus |
CG8346-PA | 675 | HLHm3-RA | 10..50 | 38..78 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 17..631 | 3075 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 38..213 | 460 | 84.7 | Plus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 37..143 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000557 | 17..631 | 3075 | 100 | Plus |
3R | 32079331 | 3R | 26005703..26005878 | 213..38 | 460 | 84.1 | Minus |
3R | 32079331 | 3R | 26022029..26022195 | 38..204 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037177..26037283 | 37..143 | 430 | 93.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:46:48 has no hits.
BO05181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:13 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:45 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8333-PA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:09 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..707 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:38 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 85..707 | 9..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:38 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999935..26000556 | 9..630 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:09 Download gff for
BO05181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825657..21826278 | 9..630 | 99 | -> | Plus |
BO05181.complete Sequence
649 bp (649 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629993
> BO05181.complete
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACCAT
BO05181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 16..191 | 38..213 | 460 | 84.1 | Plus |
E(spl)m7-HLH-RA | 561 | CG8361-PA | 15..121 | 37..143 | 430 | 93.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 17..631 | 3075 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 38..213 | 460 | 84.1 | Plus |
E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 37..143 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25999943..26000557 | 17..631 | 3075 | 100 | Plus |
3R | 32079331 | 3R | 26005703..26005878 | 213..38 | 460 | 84.1 | Minus |
3R | 32079331 | 3R | 26037177..26037283 | 37..143 | 430 | 93.5 | Plus |
3R | 32079331 | 3R | 26022029..26022195 | 38..204 | 430 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:00 has no hits.
BO05181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:47 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 1..618 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:11 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 78..700 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:38 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 93..707 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:47 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHmgamma-RA | 78..700 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:20 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)mgamma-HLH-RA | 93..707 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:20 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25999943..26000557 | 17..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:38 Download gff for
BO05181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21825665..21826279 | 17..633 | 99 | | Plus |
BO05181.pep Sequence
Translation from 16 to 649
> BO05181.pep
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPWASFLDH
BO05181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 1..205 | 1..205 | 1041 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 6..195 | 8..205 | 475 | 50.5 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 8..205 | 428 | 48.7 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 4..224 | 8..205 | 353 | 42 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..173 | 9..205 | 324 | 39.6 | Plus |