Clone BO05181 Report

Search the DGRC for BO05181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptHLHmgamma-RA
Protein status:BO05181.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO05181.3prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-02

> BO05181.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCAGACGTTCTCCTCGTCCTCGC
TGTCGTCCTCCATCTTGGTCACATCGATGGTGGTCAACAGGGAATGGCTG
GTCGAACTGGTATTGGAGTTGGGACTGCCGGCGTAGCTGGAGATTGGCGA
AATGGGCACGGAGTAGGCATCCCGATTGGCGATGTGCACGGAGAGTGGAG
CGGTCACCGGCAAGACTTCCTTTTCTGCTGGCTGGATCTGATTGAGGCGC
TGTCCCAGGTGGGTCATTAGCTGAGTGCCTAGGCTGACATTCATGCCGGG
CAGCTGGGAGAGTGAACGGGAGACCTCATTGACGGCATGGATGTAGCCGG
AACGGAAGCCCTCCGCCGGAGTCAAGCTCTCATCGCCGGAAGCCCGCTTG
TGCTGACGCTGCTGCTTCATCTTTTGCAAATGGGTGACGGTAAGTTCCAG
GATATCGGCTTTCTCCAAACGGGTGACGTGCTCGCCCTCGGACTCCAAGG
TGGCAACCATAAGATCCTTTAGCTCGTCCAGGCACTTGTTGATTCTGGCA
CGACGCTTCCTCTCCAGCATGGGCTTCATCACCTTGCGGTACTGATAGGT
CTTGGACATCTCGGACATTTGTAGCGACGACATGTCGACTGATAACT

BO05181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8333-PA 618 HLHmgamma-RA 1..615 633..19 3075 100 Minus
CG8361-PA 561 HLHm7-RA 15..116 613..512 360 94.1 Minus
CG14548-PA 588 HLHmbeta-RA 16..113 612..515 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 10..50 612..572 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..707 633..19 3075 100 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 612..437 460 84.7 Minus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 613..507 430 93.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000557 633..19 3075 100 Minus
3R 32079331 3R 26005703..26005878 437..612 460 84.1 Plus
3R 32079331 3R 26022029..26022195 612..446 430 83.8 Minus
3R 32079331 3R 26037177..26037283 613..507 430 93.5 Minus
Blast to na_te.dros performed on 2015-02-10 15:20:15 has no hits.

BO05181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:12 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 18..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:44 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 18..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:52:58 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..707 19..641 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:11 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..707 19..641 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:11 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25999935..26000556 20..641 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:52:58 Download gff for BO05181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825657..21826278 20..641 99 -> Minus

BO05181.5prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-02

> BO05181.5prime
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACC

BO05181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8333-PA 618 HLHmgamma-RA 1..615 17..631 3075 100 Plus
CG8361-PA 561 HLHm7-RA 15..116 37..138 360 94.1 Plus
CG14548-PA 588 HLHmbeta-RA 16..113 38..135 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 10..50 38..78 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..707 17..631 3075 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 38..213 460 84.7 Plus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 37..143 430 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000557 17..631 3075 100 Plus
3R 32079331 3R 26005703..26005878 213..38 460 84.1 Minus
3R 32079331 3R 26022029..26022195 38..204 430 83.8 Plus
3R 32079331 3R 26037177..26037283 37..143 430 93.5 Plus
Blast to na_te.dros performed on 2015-02-09 18:46:48 has no hits.

BO05181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:13 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:45 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8333-PA 1..618 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:09 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..707 9..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:38 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 85..707 9..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:38 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25999935..26000556 9..630 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:09 Download gff for BO05181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825657..21826278 9..630 99 -> Plus

BO05181.complete Sequence

649 bp (649 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629993

> BO05181.complete
GAAGTTATCAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGA
CCTATCAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGT
GCCAGAATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCAC
CTTGGAGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCC
TGGAACTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCAC
AAGCGGGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTC
CGGCTACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGC
CCGGCATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAG
CGCCTCAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGC
TCCACTCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTT
CGCCAATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACC
AGCCATTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAG
CGAGGACGAGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACCAT

BO05181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 618 CG8333-PA 1..615 17..631 3075 100 Plus
E(spl)mbeta-HLH-RA 588 CG14548-PA 16..191 38..213 460 84.1 Plus
E(spl)m7-HLH-RA 561 CG8361-PA 15..121 37..143 430 93.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-RA 911 CG8333-RA 93..707 17..631 3075 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..321 38..213 460 84.1 Plus
E(spl)m7-HLH-RA 982 CG8361-RA 140..246 37..143 430 93.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999943..26000557 17..631 3075 100 Plus
3R 32079331 3R 26005703..26005878 213..38 460 84.1 Minus
3R 32079331 3R 26037177..26037283 37..143 430 93.5 Plus
3R 32079331 3R 26022029..26022195 38..204 430 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:00 has no hits.

BO05181.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:47 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 1..618 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:11 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 78..700 9..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:38 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 93..707 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:47 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 78..700 9..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:20 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 93..707 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:20 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25999943..26000557 17..633 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:38 Download gff for BO05181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825665..21826279 17..633 99   Plus

BO05181.pep Sequence

Translation from 16 to 649

> BO05181.pep
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPWASFLDH

BO05181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-PA 205 CG8333-PA 1..205 1..205 1041 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 6..195 8..205 475 50.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 6..186 8..205 428 48.7 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 8..205 353 42 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 9..205 324 39.6 Plus