Clone Sequence Records
BO05185.3prime Sequence
497 bp (496 high quality bases) assembled on 2005-12-02
> BO05185.3prime
ATGGTCTAGAAAGCTTGCAAAGTTCATGGCTCCATCAAGGAATAGCAAAC
TGTCCACAGCAGAAATGGCCATATCCACGTCCCTCTTTTGTATGGTTTTC
TTTTTGGACTGCGCCGTGTAGGTATATGATTCCCGTGACAACGAGGCTAT
GAATAGTTCCACTGCCTTCGCCACTATGAACACGGCCTCATTGTTGGCCA
TATGCAGATCCGGATCTAGTTTCATTATGTTCCGTATCCTGGCCAACGGC
AGTTGTGTCATCTTGGCTTCGTTATCAGCAGGGGCCTTGTTGCCATTCGT
CACTGGTTTTTCTGTCAATTGTTCTGTTGTAGATTCTGCCTCAGGATTAT
CCGGCGATTCCTCGGTGATTTCCAAAGGCTCTTCTGTTTCCGCTAGCTCC
GCCTCCTCAGTCTCCATGGCCTGCTGATGCTCCAAGTCCTGTTCTTCCGA
GAATTCAGCCTCAAATAGTTCCTCGCTGGCCATGTCGACTGATAACT
BO05185.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11301-PA | 468 | Mes4-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..530 | 483..19 | 2325 | 100 | Minus |
Mes4-RA | 683 | CG11301-RA | 66..530 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412372 | 306..19 | 1440 | 100 | Minus |
2R | 25286936 | 2R | 22411854..22412034 | 483..303 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:46:17 has no hits.
BO05185.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:20 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-PA | 1..468 | 16..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:56 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11301-PA | 1..468 | 16..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:19 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 15..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:08 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 15..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:08 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411842..22412034 | 303..495 | 97 | -> | Minus |
2R | 22412089..22412376 | 15..302 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:19 Download gff for
BO05185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299347..18299539 | 303..495 | 97 | -> | Minus |
arm_2R | 18299594..18299881 | 15..302 | 99 | | Minus |
BO05185.5prime Sequence
497 bp (496 high quality bases) assembled on 2005-12-02
> BO05185.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTAGACC
BO05185.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11301-PA | 468 | Mes4-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..530 | 17..481 | 2325 | 100 | Plus |
Mes4-RA | 683 | CG11301-RA | 66..530 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412372 | 194..481 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 22411854..22412034 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:38:31 has no hits.
BO05185.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:21 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-PA | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:57 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11301-PA | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:33 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 5..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:16 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 54..534 | 5..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:16 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411842..22412034 | 5..197 | 97 | -> | Plus |
2R | 22412089..22412376 | 198..485 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:33 Download gff for
BO05185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299347..18299539 | 5..197 | 97 | -> | Plus |
arm_2R | 18299594..18299881 | 198..485 | 99 | | Plus |
BO05185.complete Sequence
499 bp (499 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629995
> BO05185.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTAGACCAT
BO05185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 468 | CG11301-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
Mes4-RA | 468 | CG11301-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-RB | 740 | CG11301-RB | 66..530 | 17..481 | 2325 | 100 | Plus |
Mes4-RA | 683 | CG11301-RA | 66..530 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22412085..22412372 | 194..481 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 22411854..22412034 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:17 has no hits.
BO05185.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:23 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:06 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 36..516 | 5..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:05 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 66..530 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:24 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 36..516 | 5..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:55 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes4-RA | 66..530 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:55 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22411854..22412034 | 17..197 | 100 | -> | Plus |
2R | 22412089..22412372 | 198..483 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:05 Download gff for
BO05185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18299594..18299877 | 198..483 | 99 | | Plus |
arm_2R | 18299359..18299539 | 17..197 | 100 | -> | Plus |
BO05185.pep Sequence
Translation from 16 to 499
> BO05185.pep
MASEELFEAEFSEEQDLEHQQAMETEEAELAETEEPLEITEESPDNPEAE
STTEQLTEKPVTNGNKAPADNEAKMTQLPLARIRNIMKLDPDLHMANNEA
VFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDSLLFLD
GAMNFASFLDH
BO05185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes4-PB | 155 | CG11301-PB | 1..155 | 1..155 | 768 | 100 | Plus |
Mes4-PA | 155 | CG11301-PA | 1..155 | 1..155 | 768 | 100 | Plus |
Nf-YC-PA | 601 | CG3075-PA | 148..225 | 72..149 | 156 | 42.3 | Plus |