Clone BO05185 Report

Search the DGRC for BO05185

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:51
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptMes4-RA
Protein status:BO05185.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO05185.3prime Sequence

497 bp (496 high quality bases) assembled on 2005-12-02

> BO05185.3prime
ATGGTCTAGAAAGCTTGCAAAGTTCATGGCTCCATCAAGGAATAGCAAAC
TGTCCACAGCAGAAATGGCCATATCCACGTCCCTCTTTTGTATGGTTTTC
TTTTTGGACTGCGCCGTGTAGGTATATGATTCCCGTGACAACGAGGCTAT
GAATAGTTCCACTGCCTTCGCCACTATGAACACGGCCTCATTGTTGGCCA
TATGCAGATCCGGATCTAGTTTCATTATGTTCCGTATCCTGGCCAACGGC
AGTTGTGTCATCTTGGCTTCGTTATCAGCAGGGGCCTTGTTGCCATTCGT
CACTGGTTTTTCTGTCAATTGTTCTGTTGTAGATTCTGCCTCAGGATTAT
CCGGCGATTCCTCGGTGATTTCCAAAGGCTCTTCTGTTTCCGCTAGCTCC
GCCTCCTCAGTCTCCATGGCCTGCTGATGCTCCAAGTCCTGTTCTTCCGA
GAATTCAGCCTCAAATAGTTCCTCGCTGGCCATGTCGACTGATAACT

BO05185.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11301-PA 468 Mes4-RA 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..530 483..19 2325 100 Minus
Mes4-RA 683 CG11301-RA 66..530 483..19 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412372 306..19 1440 100 Minus
2R 25286936 2R 22411854..22412034 483..303 905 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:46:17 has no hits.

BO05185.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:20 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-PA 1..468 16..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:56 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11301-PA 1..468 16..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:19 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 15..495 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:08 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 15..495 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:08 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22411842..22412034 303..495 97 -> Minus
2R 22412089..22412376 15..302 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:19 Download gff for BO05185.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299347..18299539 303..495 97 -> Minus
arm_2R 18299594..18299881 15..302 99   Minus

BO05185.5prime Sequence

497 bp (496 high quality bases) assembled on 2005-12-02

> BO05185.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTAGACC

BO05185.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11301-PA 468 Mes4-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..530 17..481 2325 100 Plus
Mes4-RA 683 CG11301-RA 66..530 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412372 194..481 1440 100 Plus
2R 25286936 2R 22411854..22412034 17..197 905 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:38:31 has no hits.

BO05185.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:21 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-PA 1..468 17..484 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:39:57 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11301-PA 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:33 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 5..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:16 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 54..534 5..485 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:16 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22411842..22412034 5..197 97 -> Plus
2R 22412089..22412376 198..485 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:33 Download gff for BO05185.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299347..18299539 5..197 97 -> Plus
arm_2R 18299594..18299881 198..485 99   Plus

BO05185.complete Sequence

499 bp (499 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629995

> BO05185.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCTGAATTCT
CGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGAGGAGGCG
GAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAATCGCCGGA
TAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAACCAGTGA
CGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGACACAACTG
CCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATCTGCATAT
GGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAACTATTCA
TAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTCCAAAAAG
AAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTGTGGACAG
TTTGCTATTCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTAGACCAT

BO05185.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 468 CG11301-PB 1..465 17..481 2325 100 Plus
Mes4-RA 468 CG11301-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-RB 740 CG11301-RB 66..530 17..481 2325 100 Plus
Mes4-RA 683 CG11301-RA 66..530 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22412085..22412372 194..481 1440 100 Plus
2R 25286936 2R 22411854..22412034 17..197 905 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:17 has no hits.

BO05185.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:23 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:06 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 36..516 5..485 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:05 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 66..530 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:24 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 36..516 5..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:55 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
Mes4-RA 66..530 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:55 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22411854..22412034 17..197 100 -> Plus
2R 22412089..22412372 198..483 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:05 Download gff for BO05185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18299594..18299877 198..483 99   Plus
arm_2R 18299359..18299539 17..197 100 -> Plus

BO05185.pep Sequence

Translation from 16 to 499

> BO05185.pep
MASEELFEAEFSEEQDLEHQQAMETEEAELAETEEPLEITEESPDNPEAE
STTEQLTEKPVTNGNKAPADNEAKMTQLPLARIRNIMKLDPDLHMANNEA
VFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDSLLFLD
GAMNFASFLDH

BO05185.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mes4-PB 155 CG11301-PB 1..155 1..155 768 100 Plus
Mes4-PA 155 CG11301-PA 1..155 1..155 768 100 Plus
Nf-YC-PA 601 CG3075-PA 148..225 72..149 156 42.3 Plus