Clone Sequence Records
BO05207.3prime Sequence
900 bp (836 high quality bases) assembled on 2005-12-02
> BO05207.3prime
ATGGTCTAGAAAGCTTGCTGACATGGAGCTGCACGGCAGCCGTGGCGAAC
CCATCTGTGTGAGCACGCGATCCAGCCACTGGAGCGGCCCGTTCAGATGG
AGTTCGATCCAGCAGGGCGTTGAGGTCACCGTCTGGCGGCGATATTCGGC
GCCCCAGCCCTTGACGAACGACATGCGGATGGTGCACATGCGTGTCAATT
GGTAGACCGCTTCGAATCCCTGCGACACGGACTGCGACAGCAGGGCGGCA
AACTCCTGGTTGTTGAAGATCTTTAGGTTGCAACCGGGCGGTATCTTGCA
TACGGTGGCCGGATGCCAGCCATATCGCTGATTACAATTTGGGCTCTGTA
CGAAAATGGACGAATCGCTCAGACATTCTGCGAATACCTCACCGCCAATA
TAGTAAAGCCGTACGCCCTTGCCGATGTGGCGACGTGTCTGCTCCACGAC
CTCGTTGCGATTCACATTAGACAGCAGTCCGAGGCAAAAGCGCTCCGAAT
TGGAGGGATCGGTAAAGCCATCCACCGTGATCGAGGGCTGCGAGGCATGG
AACGTCTCGCCGACACGCGTATTTAGCTCATAGTAGGAGATGGAACACCA
AAAGGCCGGCTCGTGGTACATCACCGGCGCTGCATCGGCGGGCGGCGTTA
GACGCGACATGTTCATGTTGTCGTTAGGATCGATGGGGTCACCATCCTCG
CTCATATAGCCGGGCGGCGGGGTGCCGGTGTTGGGAATGCTGCTGCCCAC
ACTAAGCACACTCGATTGAGAGTCCATGTTTTGGCCAAAGGACAGCTGCT
GCTGTTGCTGTTGATAGGCGGAGGCGGCGGACGATGACGACGACGACGAC
GAGGAGGGACCACCACCACCACCGGCGGCAGTCGCTGGCGTCGAACTGGC
BO05207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2262-PA | 1461 | Smox-RA | 577..1458 | 900..19 | 4410 | 100 | Minus |
| CG12399-PA | 1368 | Mad-RA | 1255..1313 | 129..71 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-RB | 4521 | CG2262-RB | 1456..2337 | 900..19 | 4410 | 100 | Minus |
| Smox-RA | 3171 | CG2262-RA | 1456..2337 | 900..19 | 4410 | 100 | Minus |
| Mad-RB | 3262 | CG12399-RB | 1600..1865 | 315..50 | 550 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8139225..8140106 | 19..900 | 4410 | 100 | Plus |
| 2L | 23513712 | 2L | 3147453..3147718 | 50..315 | 550 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:49:23 has no hits.
BO05207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:37 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-PA | 577..1461 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:19 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2262-PA | 577..1461 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:47 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 1456..2342 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:42 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 1456..2342 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:42 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8139220..8140106 | 13..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:47 Download gff for
BO05207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8033253..8034139 | 13..900 | 99 | | Plus |
BO05207.5prime Sequence
877 bp (818 high quality bases) assembled on 2005-12-02
> BO05207.5prime
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGAACATGTCGCGTCTAACGCCG
CCCGCCGATGCAGCGCCGGTGATGTAC
BO05207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2262-PA | 1461 | Smox-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
| CG12399-PA | 1368 | Mad-RA | 280..332 | 248..300 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-RB | 4521 | CG2262-RB | 880..1740 | 17..877 | 4305 | 100 | Plus |
| Smox-RA | 3171 | CG2262-RA | 880..1740 | 17..877 | 4305 | 100 | Plus |
| Mad-RB | 3262 | CG12399-RB | 811..893 | 248..330 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8139822..8140682 | 877..17 | 4305 | 100 | Minus |
| 2L | 23513712 | 2L | 3148646..3148728 | 330..248 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:36:28 has no hits.
BO05207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:38 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:20 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2262-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:40 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 877..1740 | 14..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:02 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 877..1740 | 14..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:02 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8139822..8140685 | 14..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:40 Download gff for
BO05207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8033855..8034718 | 14..877 | 99 | | Minus |
BO05207.complete Sequence
1492 bp (1492 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629996
> BO05207.complete
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGAACATGTCGCGTCTAACGCCG
CCCGCCGATGCAGCGCCGGTGATGTACCACGAGCCGGCCTTTTGGTGTTC
CATCTCCTACTATGAGCTAAATACGCGTGTCGGCGAGACGTTCCATGCCT
CGCAGCCCTCGATCACGGTGGATGGCTTTACCGATCCCTCCAATTCGGAG
CGCTTTTGCCTCGGACTGCTGTCTAATGTGAATCGCAACGAGGTCGTGGA
GCAGACACGTCGCCACATCGGCAAGGGCGTACGGCTTTACTATATTGGCG
GTGAGGTATTCGCAGAATGTCTGAGCGATTCGTCCATTTTCGTACAGAGC
CCAAATTGTAATCAGCGATATGGCTGGCATCCGGCCACCGTATGCAAGAT
ACCGCCCGGTTGCAACCTAAAGATCTTCAACAACCAGGAGTTTGCCGCCC
TGCTGTCGCAGTCCGTGTCGCAGGGATTCGAAGCGGTCTACCAATTGACA
CGCATGTGCACCATCCGCATGTCGTTCGTCAAGGGCTGGGGCGCCGAATA
TCGCCGCCAGACGGTGACCTCAACGCCCTGCTGGATCGAACTCCATCTGA
ACGGGCCGCTCCAGTGGCTGGATCGCGTGCTCACACAGATGGGTTCGCCA
CGGCTGCCGTGCAGCTCCATGTCAGCAAGCTTTCTAGACCAT
BO05207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-RB | 1461 | CG2262-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| Smox-RA | 1461 | CG2262-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| Mad-RB | 1578 | CG12399-PB | 1279..1544 | 1178..1443 | 550 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-RB | 4521 | CG2262-RB | 880..2337 | 17..1474 | 7290 | 100 | Plus |
| Smox-RA | 3171 | CG2262-RA | 880..2337 | 17..1474 | 7290 | 100 | Plus |
| Mad-RB | 3262 | CG12399-RB | 1600..1865 | 1178..1443 | 550 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8139225..8140682 | 1474..17 | 7290 | 100 | Minus |
| 2L | 23513712 | 2L | 3147453..3147718 | 1443..1178 | 550 | 80.5 | Minus |
| 2L | 23513712 | 2L | 3148646..3148728 | 330..248 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:02:09 has no hits.
BO05207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:26 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 1..1461 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:11 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 839..2304 | 14..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:37 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 885..2337 | 22..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:26 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 839..2304 | 14..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:53 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smox-RA | 885..2337 | 22..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:53 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8139223..8140677 | 22..1476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:37 Download gff for
BO05207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8033256..8034710 | 22..1476 | 99 | | Minus |
BO05207.pep Sequence
Translation from 16 to 1492
> BO05207.pep
MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNSQLEELE
RAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNE
LKPLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPL
DNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGPVSVSSSASSTPATA
AGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNT
GTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYE
LNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRH
IGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCN
LKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV
TSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMSASFLDH
BO05207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smox-PB | 486 | CG2262-PB | 1..486 | 1..486 | 2597 | 100 | Plus |
| Smox-PA | 486 | CG2262-PA | 1..486 | 1..486 | 2597 | 100 | Plus |
| Mad-PA | 455 | CG12399-PA | 20..455 | 1..486 | 1261 | 53 | Plus |
| Mad-PB | 525 | CG12399-PB | 90..525 | 1..486 | 1261 | 53 | Plus |
| Med-PB | 697 | CG1775-PB | 353..688 | 185..475 | 435 | 35.4 | Plus |
