Clone BO05220 Report

Search the DGRC for BO05220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptD19A-RA
Protein status:BO05220.pep: Imported from assembly
Sequenced Size:2569

Clone Sequence Records

BO05220.3prime Sequence

871 bp (850 high quality bases) assembled on 2005-12-02

> BO05220.3prime
ATGGTCTAGAAAGCTTGCGACGTGGTCGATCTTCAGGGCATCCAGGCTGG
TGCCCTCGGATTGCGCTTTCTGCGCATAGTAGCCATCGTACGAGGTGGTC
GCCTTGATGATCTCCTGCTGCTGCTGCAGCTTCGTCAGCTGCTCGCAGGC
CGCCGCCGCGATCTTCTGCCGCTCAATTTCCGCCTTCCGCTTGGCCTCGT
TCTCCTCCAGCTGGTGCGCCAGCAGCTCAGCGGTGGCCGCTGCCCGCTCC
ACCGCCGGATCCTGATACTGGTCAAAGTTACGCGGCTCGGCGTCTGGCTC
CAGCTTGCGGAACGTGATCTGAGTGGGCGCACTGCGCTCGGGCACGTGTC
TCCGGTTCGGCTTCTCGTGCGTCTTGATGTGTTTCTTGAGTGCCGTCTCC
TGGCGGAAGTGTTTGCCACAAATCTTGCACTCGAAGGGCTTCTCGCCCGT
GTGGATCCATTCGTGATGCCGCAGAATCTGTGCCTTGGAGAATCTCTTCG
GGCAGAAGCGACAGGCAAAGTCCTTGACCTTCTCGTGGATGATTTTGTAG
TGAAGTTTCATGTTTCCAATATTATTGAAGCCACGCCCACAGCCTGGACA
GATGTGCTGGCCTTCCTTCTTGGTGAAGTTCACTTGCGGCGACCACGAGG
GCACGGATACGGATGGTATTGGATTTACCGCAGTACCCGCCAGCTGAGAA
ATGTCCACCCGCTGGACGCGTCGCGAGTTCTTCGGTTTGGGAGGCACTGC
AGCGGTCCCGCCGCCGCATGCCTTCAGCATGTCCTCACTAGGCATCTGGT
TGGGGTCCATTGGCACCAAACCATCCGTCTGCATCTGCATCGGCATCTGG
CCCGGCATCGGTACGGACATT

BO05220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10269-PA 2538 D19A-RA 1683..2535 871..19 4265 100 Minus
CG10270-PA 2325 D19B-RA 1703..1757 653..599 225 96.3 Minus
CG10270-PA 2325 D19B-RA 2095..2180 264..179 205 89.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
D19A-RA 3233 CG10269-RA 1827..2679 871..19 4265 100 Minus
CG10274-RB 3034 CG10274-RB 1878..2189 696..385 660 80.8 Minus
D19B-RA 2685 CG10270-RA 1755..2117 720..358 645 79.2 Minus
CG10274-RB 3034 CG10274-RB 2401..2651 269..19 235 73.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6186384..6187236 19..871 4265 100 Plus
3L 28110227 3L 6179522..6179833 385..696 660 80.8 Plus
3L 28110227 3L 6182744..6183106 358..720 645 78.5 Plus
3L 28110227 3L 6182501..6182647 118..264 360 83 Plus
3L 28110227 3L 6179060..6179310 19..269 235 72.9 Plus
3L 28110227 3L 6191507..6191672 564..399 200 74.7 Minus
Blast to na_te.dros performed on 2015-02-12 14:18:05 has no hits.

BO05220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:46 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
D19A-PA 1683..2538 18..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:31 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10269-PA 1683..2538 18..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:07:57 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 1827..2684 13..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:18 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 1827..2684 13..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:18 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6186379..6187236 13..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:07:57 Download gff for BO05220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6179479..6180336 13..871 99   Plus

BO05220.5prime Sequence

947 bp (853 high quality bases) assembled on 2005-12-02

> BO05220.5prime
GAAGTTATCAGTCGACATGAACGAGGGCAGGCAGTACTCGATCCACAGCC
TGTGCAGGATCTGTCTGAACCACCTGCAGAACGACGCCGCCTACGATTTG
TATCTGGTTCCAGGACTTTCGAAGAAGCTATGCTTCTGCACATCCCTGTC
CGTGGAGCAAAACGACGGATTCCCGAAGAACCTGTGCACCCTGTGCTACA
CCAAGCTGAACGAGCTGCACGACTTTCAGAAACAGTGCGTCGATTCCGTG
CAAAAGTTCCAGGATCTGGTGGCCAGCAATGTCTTTGCCTGCCAGAGCAG
CTTCGACGTCTTCGATCCCAACGTTGCCGTGCAGGACTACCCGGCCGAGG
AAGAGGACCACGTCAACTATGACCCGCTGCTGAACCACAAGATGGAGCTA
ATCGAGAACGAGGAGGATGTCTTCAAGATGCTGGAGCACGTCGACAAGGA
GGCCGAGGAGGTGGAGAAGGAGGCCAAGGTGGAGGAGGATGACGGGGGCA
ACGTTTCCGTCAAGATGTTCGACGACGATTCGTCCATCGAGAGCGGCAAT
GACAACGACCACGATCTGGACTTCGAGCCAAATAGCAGCGATGATGACAT
TCCGCTGGCCCAGCGCATGAGGGGACCAGCTACCGGATCAGGACCCCAGC
AGGACCGTTTTAGCAACCTAGACAAACCCAAGCCGAGGCCCCGGGGACGG
CCCAAAAAGATAAAACCGCCTCCGCCAGAGGAGGAGGAGTTGAGCGACTC
ATCCTCCGAATCAGATGACTCCGAAGACGGCACATCGCGGGGCGACAAGC
CGAAGAGGAAGCGCATTCCCATCGAGGAACGCCACCTGCACCGCATCATC
GACTGCCACATTTTGCACCAGAAGTTCAAGAAGGCCATCCGCTACGAGGA
GCACATGAAGTACCACAACGACCTGCTGCCCTTCCAATGCAAGGTGG

BO05220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10269-PA 2538 D19A-RA 1..931 17..947 4605 99.7 Plus
CG10270-PA 2325 D19B-RA 185..263 201..279 295 94.9 Plus
CG10270-PA 2325 D19B-RA 775..845 866..936 205 91.5 Plus
CG10270-PA 2325 D19B-RA 388..451 404..467 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
D19A-RA 3233 CG10269-RA 145..1075 17..947 4625 99.8 Plus
D19B-RA 2685 CG10270-RA 228..575 125..472 690 80.2 Plus
CG10274-RB 3034 CG10274-RB 846..966 827..947 470 92.6 Plus
D19B-RA 2685 CG10270-RA 867..969 839..941 320 87.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6188049..6188979 947..17 4625 99.8 Minus
3L 28110227 3L 6184346..6184693 472..125 690 79.9 Minus
3L 28110227 3L 6180864..6180984 947..827 470 92.6 Minus
3L 28110227 3L 6181274..6181382 471..363 350 88.1 Minus
3L 28110227 3L 6183952..6184054 941..839 320 87.4 Minus
3L 28110227 3L 6181477..6181641 286..122 225 75.8 Minus
3L 28110227 3L 6189945..6190016 154..225 210 86.1 Plus
Blast to na_te.dros performed on 2015-02-04 19:38:26 has no hits.

BO05220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:47 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
D19A-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:32 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10269-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:07 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 139..1075 10..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:39:42 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 139..1075 10..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:39:42 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6188049..6188985 10..947 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:07 Download gff for BO05220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6181149..6182085 10..947 99   Minus

BO05220.complete Sequence

2569 bp assembled on 2008-08-14

GenBank Submission: FJ629997

> BO05220.complete
GAAGTTATCAGTCGACATGAACGAGGGCAGGCAGTACTCGATCCACAGCC
TGTGCAGGATCTGTCTGAACCACCTGCAGAACGACGCCGCCTACGATTTG
TATCTGGTTCCAGGACTTTCGAAGAAGCTATGCTTCTGCACATCCCTGTC
CGTGGAGCAAAACGACGGATTCCCGAAGAACCTGTGCACCCTGTGCTACA
CCAAGCTGAACGAGCTGCACGACTTTCAGAAACAGTGCGTCGATTCCGTG
CAAAAGTTCCAGGATCTGGTGGCCAGCAATGTCTTTGCCTGCCAGAGCAG
CTTCGACGTCTTCGATCCCAACGTTGCCGTGCAGGACTACCCGGCCGAGG
AAGAGGACCACGTCAACTATGACCCGCTGCTGAACCACAAGATGGAGCTA
ATCGAGAACGAGGAGGATGTCTTCAAGATGCTGGAGCACGTCGACAAGGA
GGCCGAGGAGGTGGAGAAGGAGGCCAAGGTGGAGGAGGATGACGGGGGCA
ACGTTTCCGTCAAGATGTTCGACGACGATTCGTCCATCGAGAGCGGCAAT
GACAACGACCACGATCTGGACTTCGAGCCAAATAGCAGCGATGATGACAT
TCCGCTGGCCCAGCGCATGAGGGGACCAGCTACCGGATCAGGACCCCAGC
AGGACCGTTTTAGCAACCTAGACAAACCCAAGCCGAGGCCCCGGGGACGG
CCCAAAAAGATAAAACCGCCTCCGCCAGAGGAGGAGGAGTTGAGCGACTC
ATCCTCCGAATCAGATGACTCCGAAGACGGCACATCGCGGGGCGACAAGC
CGAAGAGGAAGCGCATTCCCATCGAGGAACGCCACCTGCACCGCATCATC
GACTGCCACATTTGCCACCAGAAGTTCAAGAAGGCCATCCGCTACGAGGA
GCACATGAAGTACCACAACGACCTGCTGCCCTTCCAATGCAAGGTGGAGA
CCTGCAAGAAAGGTTTCACTACCGCCAATGGGCTGCGCATTCACATCGAC
CACGCCCACACAGAGCTGTCCGAGGTTCACGCCTGCATCGCCGAGGGCTG
CGGCAAGACCTTCCCGCGCGTCCGTCTGCTCACCTTCCACATGAAGAAGG
TGCACGGTATCACCAAGGCGGCTGCCCCGCTTCGAGATTTCCCCTGCACA
GAATGCGACACCGTATTCCGCTGCCCCACAGCACTCAAGAAGCACATGTA
TAAGCACACGGGCGAGGAGCTTCCGTATCCTTGCAATATCTGCGGCAAGC
GTTTTGTAATCAATAGTGCTTTAAGGGATCACCTTATGCGTCACGCAGGC
ATCAAGAACCATGTGTGTCCGTACTGCGGGGTGGGCAAGACGACGCGCCA
GGAATGGAACGCCCACATCCTCACGCACACCAAGGAGAAAAAGTTCAAGT
GCCGACAGTGCGACCATGCCTCGCACAACAAACAGGCGTTGTCCAATCAT
GTAAAGGTGGTGCACGAAAAGCGCAAGGACTTTGCCTGCCAGTACTGCGG
AAAGACCTTCGGCAAGTCGCACGCCTGCAAGGTGCACGAGAGGAGTCACA
CGGGGGAGAAGTGCTGCGAGTGCAAGATCTGCGGCAAGATATTCCTCTGC
GAGAAGAGCCTCACCAAGCATTTGAAGACGCACGAGAAAAGGGATCTGCC
GCCGGCGGAGCCCCTTCGCCAGCAGCTTAACATTCCCATGCCCGGCCAAA
TGTCCGTACCGATGCCGGGCCAGATGCCGATGCAGATGCAGACGGATGGT
TTGGTGCCAATGGACCCCAACCAGATGCCTAGTGAGGACATGCTGAAGGC
ATGCGGCGGCGGGACCGCTGCAGTGCCTCCCAAACCGAAGAACTCGCGAC
GCGTCCAGCGGGTGGACATTTCTCAGCTGGCGGGTACTGCGGTAAATCCA
ATACCATCCGTATCCGTGCCCTCGTGGTCGCCGCAAGTGAACTTCACCAA
GAAGGAAGGCCAGCACATCTGTCCAGGCTGTGGGCGTGGCTTCAATAATA
TTGGAAACATGAAACTTCACTACAAAATCATCCACGAGAAGGTCAAGGAC
TTTGCCTGTCGCTTCTGCCCGAAGAGATTCTCCAAGGCACAGATTCTGCG
GCATCACGAATGGATCCACACGGGCGAGAAGCCCTTCGAGTGCAAGATTT
GTGGCAAACACTTCCGCCAGGAGACGGCACTCAAGAAACACATCAAGACG
CACGAGAAGCCGAACCGGAGACACGTGCCCGAGCGCAGTGCGCCCACTCA
GATCACGTTCCGCAAGCTGGAGCCAGACGCCGAGCCGCGTAACTTTGACC
AGTATCAGGATCCGGCGGTGGAGCGGGCAGCGGCCACCGCTGAGCTGCTG
GCGCACCAGCTGGAGGAGAACGAGGCCAAGCGGAAGGCGGAAATTGAGCG
GCAGAAGATCGCGGCGGCGGCCTGCGAGCAGCTGACGAAGCTGCAGCAGC
AGCAGGAGATCATCAAGGCGACCACCTCGTACGATGGCTACTATGCGCAG
AAAGCGCAATCCGAGGGCACCAGCCTGGATGCCCTGAAGATCGACCACGT
CGCAAGCTTTCTAGACCAT

BO05220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
D19A-RA 2538 CG10269-PA 1..2535 17..2551 12675 100 Plus
CG10274-RB 2592 CG10274-PB 784..1595 827..1638 1750 81 Plus
D19B-RA 2325 CG10270-PA 748..1538 839..1638 1715 81.2 Plus
CG10274-RB 2592 CG10274-PB 1816..2127 1874..2185 660 80.8 Plus
CG10274-RB 2592 CG10274-PB 386..494 363..471 350 88.1 Plus
CG10274-RB 2592 CG10274-PB 2339..2589 2301..2551 235 72.9 Plus
CG10274-RB 2592 CG10274-PB 127..291 122..286 225 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
D19A-RA 3233 CG10269-RA 145..2679 17..2551 12675 100 Plus
CG10274-RB 3034 CG10274-RB 846..1657 827..1638 1750 81 Plus
D19B-RA 2685 CG10270-RA 867..1657 839..1638 1715 81.2 Plus
CG10274-RB 3034 CG10274-RB 1878..2189 1874..2185 660 80.8 Plus
CG10274-RB 3034 CG10274-RB 448..556 363..471 350 88.1 Plus
CG10274-RB 3034 CG10274-RB 2401..2651 2301..2551 235 72.9 Plus
CG10274-RB 3034 CG10274-RB 189..353 122..286 225 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6186384..6187974 2551..961 7955 100 Minus
3L 28110227 3L 6188032..6188979 964..17 4740 100 Minus
3L 28110227 3L 6183204..6183703 1638..1139 1435 85.8 Minus
3L 28110227 3L 6180181..6180767 1576..990 1180 80.1 Minus
3L 28110227 3L 6184346..6184693 472..125 690 79.9 Minus
3L 28110227 3L 6179522..6179833 2185..1874 660 80.8 Minus
3L 28110227 3L 6182744..6183106 2212..1850 645 78.5 Minus
3L 28110227 3L 6180847..6180984 964..827 540 92.8 Minus
3L 28110227 3L 6190735..6191124 1187..1576 465 74.6 Plus
3L 28110227 3L 6182501..6182647 2452..2306 360 83 Minus
3L 28110227 3L 6181274..6181382 471..363 350 88.1 Minus
3L 28110227 3L 6183952..6184054 941..839 350 89.3 Minus
3L 28110227 3L 6179060..6179310 2551..2301 235 72.9 Minus
3L 28110227 3L 6181477..6181641 286..122 225 75.8 Minus
3L 28110227 3L 6189945..6190016 154..225 210 86.1 Plus
3L 28110227 3L 6191507..6191672 2006..2171 200 74.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:38:47 has no hits.

BO05220.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:39 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 117..2662 10..2557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:56 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 145..2679 17..2553 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:12 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 123..2657 17..2553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:35 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
D19A-RA 145..2679 17..2553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:35 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6186382..6187972 963..2553 99 <- Minus
3L 6188034..6188979 17..962 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:56 Download gff for BO05220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6179482..6181072 963..2553 99 <- Minus
arm_3L 6181134..6182079 17..962 100   Minus

BO05220.pep Sequence

Translation from 16 to 2569

> BO05220.pep
MNEGRQYSIHSLCRICLNHLQNDAAYDLYLVPGLSKKLCFCTSLSVEQND
GFPKNLCTLCYTKLNELHDFQKQCVDSVQKFQDLVASNVFACQSSFDVFD
PNVAVQDYPAEEEDHVNYDPLLNHKMELIENEEDVFKMLEHVDKEAEEVE
KEAKVEEDDGGNVSVKMFDDDSSIESGNDNDHDLDFEPNSSDDDIPLAQR
MRGPATGSGPQQDRFSNLDKPKPRPRGRPKKIKPPPPEEEELSDSSSESD
DSEDGTSRGDKPKRKRIPIEERHLHRIIDCHICHQKFKKAIRYEEHMKYH
NDLLPFQCKVETCKKGFTTANGLRIHIDHAHTELSEVHACIAEGCGKTFP
RVRLLTFHMKKVHGITKAAAPLRDFPCTECDTVFRCPTALKKHMYKHTGE
ELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAH
ILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYCGKTFGK
SHACKVHERSHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPAEPL
RQQLNIPMPGQMSVPMPGQMPMQMQTDGLVPMDPNQMPSEDMLKACGGGT
AAVPPKPKNSRRVQRVDISQLAGTAVNPIPSVSVPSWSPQVNFTKKEGQH
ICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWI
HTGEKPFECKICGKHFRQETALKKHIKTHEKPNRRHVPERSAPTQITFRK
LEPDAEPRNFDQYQDPAVERAAATAELLAHQLEENEAKRKAEIERQKIAA
AACEQLTKLQQQQEIIKATTSYDGYYAQKAQSEGTSLDALKIDHVASFLD
H

BO05220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
D19A-PA 845 CG10269-PA 1..845 1..845 4611 100 Plus
D19B-PA 774 CG10270-PA 1..774 1..845 2928 66 Plus
CG10274-PB 863 CG10274-PB 6..863 3..845 2891 62.9 Plus
CG7386-PA 662 CG7386-PA 4..661 6..823 1649 41.7 Plus
CG10147-PB 448 CG10147-PB 154..433 262..543 516 36.1 Plus