Clone Sequence Records
BO05228.3prime Sequence
782 bp (762 high quality bases) assembled on 2005-12-02
> BO05228.3prime
ATGGTCTAGAAAGCTTGCAGCTACTGGCGACGAATCGCCTTTCATGTCGC
GCTCACGAAAAAACCCGCGCTCCGTCTTGCACTCGCGTATGGTAACGGTC
TCCAGGTTTACGGTGACGTCTGTGATCACCACCCGGTTGGATATGTTGCA
TTTGGCCGGCAGCCAGAAGCGCGGCGGAAGGGCACGCGGCGAAAGAGGAG
TAAGCGGCTGTTTCTGGTTGATAGCCAGGTTGTTGCACGGTTTTGGTATG
TTATTGTTCTCGGAAGGAACCTGTGGCGCCTGTTGGTTGCCTTCCTCGTT
GGCTACTTCTTCTTCCTCAGCTCCGGACTCTGCGGGCGTTGTGTTTATGG
CTTCTGTGGCCAGTGGGGTGGCCTGCTGCTCAGATTTCAGCTGCGTTGCA
GCCTCGCTGGCAATCTTTTCCGCTTGCTGCTGATCCTGGAAGGGCTGCTG
CTGGCTGGGAGTTACCTGCTGGGTCGGCTGAGGCTTAATAGTGGGGCCAT
CTGGGGAGGTCTTAATCGTAACTCCAATCTTGCCCGATTCCTTGAGCACC
TCGGCTTTGCGTTTGGTGCCGATCAGCGGCTGATCCTCGGAGCTGGAGGA
GTTGCTGTCCGGCTCGGGGACAAATGAGTTGTGCGTGAAGCTGCTGTTCG
AGGAGGAGCTGTGATCAATGCGCTGACGCTTGGACTCGTGGTGGTGGTGA
TGATGATGGTGGGTCAGCGGAGATTCCGAGCGCCGTCCACTGTTGCGTTC
GGACTTGATGTGGTGAGATGGTGGGGGGGGGG
BO05228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32443-PA | 1173 | Pc-RA | 423..1170 | 766..19 | 3740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pc-RA | 2462 | CG32443-RA | 524..1280 | 774..19 | 3760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21316427..21317174 | 19..766 | 3740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:22:27 has no hits.
BO05228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:19:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:38 Download gff for
BO05228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32443-PA | 406..1173 | 16..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:29 Download gff for
BO05228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 516..1287 | 11..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:00 Download gff for
BO05228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 516..1287 | 11..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:00 Download gff for
BO05228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21316420..21317191 | 11..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:29 Download gff for
BO05228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21309520..21310291 | 11..782 | 99 | | Plus |
BO05228.5prime Sequence
895 bp (855 high quality bases) assembled on 2005-12-02
> BO05228.5prime
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAA
BO05228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32443-PA | 1173 | Pc-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pc-RA | 2462 | CG32443-RA | 111..989 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21316718..21317484 | 895..129 | 3835 | 100 | Minus |
3L | 28110227 | 3L | 21317796..21317910 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:27:22 has no hits.
BO05228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:19:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:39 Download gff for
BO05228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32443-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:02 Download gff for
BO05228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 111..989 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:00 Download gff for
BO05228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 111..989 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:00 Download gff for
BO05228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21316718..21317482 | 131..895 | 100 | <- | Minus |
3L | 21317797..21317910 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:02 Download gff for
BO05228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21309818..21310582 | 131..895 | 100 | <- | Minus |
arm_3L | 21310897..21311010 | 17..130 | 100 | | Minus |
BO05228.complete Sequence
1204 bp (1204 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629998
> BO05228.complete
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGT
AGCCAACGAGGAAGGCAACCAACAGGCGCCACAGGTTCCTTCCGAGAACA
ATAACATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCG
CTTACTCCTCTTTCGCCGCGTGCCCTTCCGCCGCGCTTCTGGCTGCCGGC
CAAATGCAACATATCCAACCGGGTGGTGATCACAGACGTCACCGTAAACC
TGGAGACCGTTACCATACGCGAGTGCAAGACGGAGCGCGGGTTTTTTCGT
GAGCGCGACATGAAAGGCGATTCGTCGCCAGTAGCTGCAAGCTTTCTAGA
CCAT
BO05228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pc-RA | 1173 | CG32443-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pc-RA | 2462 | CG32443-RA | 111..1280 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21316427..21317484 | 1186..129 | 5290 | 100 | Minus |
3L | 28110227 | 3L | 21317796..21317910 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:26:38 has no hits.
BO05228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:27 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 1..1173 | 17..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:12 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 67..1243 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:01 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 111..1280 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:27 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 67..1243 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:51 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pc-RA | 111..1280 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:51 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21316424..21317482 | 131..1188 | 99 | <- | Minus |
3L | 21317797..21317910 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:01 Download gff for
BO05228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21309524..21310582 | 131..1188 | 99 | <- | Minus |
arm_3L | 21310897..21311010 | 17..130 | 100 | | Minus |
BO05228.pep Sequence
Translation from 16 to 1204
> BO05228.pep
MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW
NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES
EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS
GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS
EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF
QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG
NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS
NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVAASFLDH
BO05228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pc-PA | 390 | CG32443-PA | 1..390 | 1..390 | 2075 | 100 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 24..115 | 26..131 | 159 | 34.9 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 24..115 | 26..131 | 159 | 34.9 | Plus |
dikar-PG | 3080 | CG42799-PG | 401..625 | 88..315 | 156 | 23.2 | Plus |
dikar-PC | 3080 | CG42799-PC | 401..625 | 88..315 | 156 | 23.2 | Plus |