Clone BO05228 Report

Search the DGRC for BO05228

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptPc-RA
Protein status:BO05228.pep: validated full length
Sequenced Size:1204

Clone Sequence Records

BO05228.3prime Sequence

782 bp (762 high quality bases) assembled on 2005-12-02

> BO05228.3prime
ATGGTCTAGAAAGCTTGCAGCTACTGGCGACGAATCGCCTTTCATGTCGC
GCTCACGAAAAAACCCGCGCTCCGTCTTGCACTCGCGTATGGTAACGGTC
TCCAGGTTTACGGTGACGTCTGTGATCACCACCCGGTTGGATATGTTGCA
TTTGGCCGGCAGCCAGAAGCGCGGCGGAAGGGCACGCGGCGAAAGAGGAG
TAAGCGGCTGTTTCTGGTTGATAGCCAGGTTGTTGCACGGTTTTGGTATG
TTATTGTTCTCGGAAGGAACCTGTGGCGCCTGTTGGTTGCCTTCCTCGTT
GGCTACTTCTTCTTCCTCAGCTCCGGACTCTGCGGGCGTTGTGTTTATGG
CTTCTGTGGCCAGTGGGGTGGCCTGCTGCTCAGATTTCAGCTGCGTTGCA
GCCTCGCTGGCAATCTTTTCCGCTTGCTGCTGATCCTGGAAGGGCTGCTG
CTGGCTGGGAGTTACCTGCTGGGTCGGCTGAGGCTTAATAGTGGGGCCAT
CTGGGGAGGTCTTAATCGTAACTCCAATCTTGCCCGATTCCTTGAGCACC
TCGGCTTTGCGTTTGGTGCCGATCAGCGGCTGATCCTCGGAGCTGGAGGA
GTTGCTGTCCGGCTCGGGGACAAATGAGTTGTGCGTGAAGCTGCTGTTCG
AGGAGGAGCTGTGATCAATGCGCTGACGCTTGGACTCGTGGTGGTGGTGA
TGATGATGGTGGGTCAGCGGAGATTCCGAGCGCCGTCCACTGTTGCGTTC
GGACTTGATGTGGTGAGATGGTGGGGGGGGGG

BO05228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32443-PA 1173 Pc-RA 423..1170 766..19 3740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-RA 2462 CG32443-RA 524..1280 774..19 3760 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21316427..21317174 19..766 3740 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:22:27 has no hits.

BO05228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:19:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:38 Download gff for BO05228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32443-PA 406..1173 16..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:29 Download gff for BO05228.3prime
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 516..1287 11..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:00 Download gff for BO05228.3prime
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 516..1287 11..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:00 Download gff for BO05228.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21316420..21317191 11..782 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:29 Download gff for BO05228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21309520..21310291 11..782 99   Plus

BO05228.5prime Sequence

895 bp (855 high quality bases) assembled on 2005-12-02

> BO05228.5prime
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAA

BO05228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32443-PA 1173 Pc-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-RA 2462 CG32443-RA 111..989 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21316718..21317484 895..129 3835 100 Minus
3L 28110227 3L 21317796..21317910 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:27:22 has no hits.

BO05228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:19:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:39 Download gff for BO05228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32443-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:02 Download gff for BO05228.5prime
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 111..989 17..895 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:00 Download gff for BO05228.5prime
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 111..989 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:00 Download gff for BO05228.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21316718..21317482 131..895 100 <- Minus
3L 21317797..21317910 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:02 Download gff for BO05228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21309818..21310582 131..895 100 <- Minus
arm_3L 21310897..21311010 17..130 100   Minus

BO05228.complete Sequence

1204 bp (1204 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629998

> BO05228.complete
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGT
AGCCAACGAGGAAGGCAACCAACAGGCGCCACAGGTTCCTTCCGAGAACA
ATAACATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCG
CTTACTCCTCTTTCGCCGCGTGCCCTTCCGCCGCGCTTCTGGCTGCCGGC
CAAATGCAACATATCCAACCGGGTGGTGATCACAGACGTCACCGTAAACC
TGGAGACCGTTACCATACGCGAGTGCAAGACGGAGCGCGGGTTTTTTCGT
GAGCGCGACATGAAAGGCGATTCGTCGCCAGTAGCTGCAAGCTTTCTAGA
CCAT

BO05228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-RA 1173 CG32443-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-RA 2462 CG32443-RA 111..1280 17..1186 5850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21316427..21317484 1186..129 5290 100 Minus
3L 28110227 3L 21317796..21317910 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:26:38 has no hits.

BO05228.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:27 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 17..1189 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:12 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 67..1243 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:01 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 111..1280 17..1188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:27 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 67..1243 17..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:51 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 111..1280 17..1188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:51 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21316424..21317482 131..1188 99 <- Minus
3L 21317797..21317910 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:01 Download gff for BO05228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21309524..21310582 131..1188 99 <- Minus
arm_3L 21310897..21311010 17..130 100   Minus

BO05228.pep Sequence

Translation from 16 to 1204

> BO05228.pep
MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW
NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES
EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS
GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS
EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF
QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG
NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS
NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVAASFLDH

BO05228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-PA 390 CG32443-PA 1..390 1..390 2075 100 Plus
Su(var)205-PB 206 CG8409-PB 24..115 26..131 159 34.9 Plus
Su(var)205-PA 206 CG8409-PA 24..115 26..131 159 34.9 Plus
dikar-PG 3080 CG42799-PG 401..625 88..315 156 23.2 Plus
dikar-PC 3080 CG42799-PC 401..625 88..315 156 23.2 Plus