Clone Sequence Records
BO05229.3prime Sequence
948 bp (840 high quality bases) assembled on 2005-12-02
> BO05229.3prime
ATGGTCTAGAAAGCTTGCCGGATGCGAAGATCCCATCCTGGGACCGTATA
ACGAGTACGGTGCAAAATATTGGGCCAGCGCCGGATGTGGCGGCAGTCCG
GGCATTCCGGGTGGCGCCAACGAGGGCGGCAGCATCGATGGCTTACCGTA
CGGATGATAACGGGCCGCCGACAGCGGACTCAGCGGCGGGGTGGGATAGG
TGCGCTGGAAAAGCGGATGATTGGGCGGTATACCGCCGGCGGCCGCTGCA
CTCAGTACTGCGTCCGGAACGGAGGCCGTATGGGTGCGCAGATGCTGGAA
CAGGTCGTCGGAGGTGCCGAATCGCTTGCCACAGTACGCGGCATCGCTGC
CGATCCACGAGCAGACGTACGGCATCTGGGAGGCAGCGGCCAGGGCGGCC
AACTGGGCGTGGTACGAGGAGGCAGCTGCCGCCGCCGCCGCTGCTGCCGC
ACTCGATGAACCACCCGATCCGCCTTGGCTTCCGCTGGATTTGGATGAAC
CACCTCCGCCGCCTCCACCTCCCTCGCACTGCGGACATCCCGCCGGACAC
GGCTGACCTGCCGCCTTGTTTATGTAGTGCGGACTGGCCGGACATCCGGT
GCAATAGGGATCGCGGCACACATTCGGCGTGGCCGCCATCATCGACTGCT
CCGTCAGCCCCTTCATTCGGGCGTAGTTCAGATACGGATTCATCGCCGAC
GCCTTGAACATGGCGTGGTGTGGCGACATCAACGAGCTGGCGGTCATCAA
GTCCATGGAATAGGGGCTGCCGTAACCGGGTGGATAATAGGATGCAGCAG
CTGCTGCTGCTGAGGCGGATCCTTGCTGGCTGGCCGCGTGCAGAGCCTTC
ACATAGTTGGCCTCCTTGGCGGCGGCGAGGGCGGCTTCCTGCAGGCGATT
CGAGCTGGCGATTTGGGCAGCCGCCGCCGCTGCCGCTGCCGCTGCACT
BO05229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4220-PC | 1659 | elB-RC | 727..1656 | 948..19 | 4650 | 100 | Minus |
CG4220-PA | 2037 | elB-RA | 1276..2034 | 777..19 | 3795 | 100 | Minus |
CG4220-PB | 2457 | elB-RB | 1276..1907 | 777..146 | 3160 | 100 | Minus |
CG4220-PA | 2037 | elB-RA | 1045..1216 | 948..777 | 860 | 100 | Minus |
CG4220-PB | 2457 | elB-RB | 1045..1216 | 948..777 | 860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RD | 3326 | CG4220-RD | 1843..2772 | 948..19 | 4650 | 100 | Minus |
elB-RC | 3323 | CG4220-RC | 1840..2769 | 948..19 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14391182..14391940 | 19..777 | 3795 | 100 | Plus |
2L | 23513712 | 2L | 14392228..14392401 | 775..948 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:39:27 has no hits.
BO05229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:53 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-PC | 727..1659 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:41 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4220-PC | 727..1659 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:39 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1840..2769 | 19..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:40 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1840..2769 | 19..948 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:40 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14391182..14391939 | 19..776 | 100 | <- | Plus |
2L | 14392230..14392401 | 777..948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:39 Download gff for
BO05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14391182..14391939 | 19..776 | 100 | <- | Plus |
arm_2L | 14392230..14392401 | 777..948 | 100 | | Plus |
BO05229.5prime Sequence
918 bp (826 high quality bases) assembled on 2005-12-02
> BO05229.5prime
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGGTA
BO05229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4220-PC | 1659 | elB-RC | 1..899 | 17..915 | 4495 | 100 | Plus |
CG4220-PA | 2037 | elB-RA | 387..1216 | 85..914 | 4150 | 100 | Plus |
CG4220-PB | 2457 | elB-RB | 387..1216 | 85..914 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 3323 | CG4220-RC | 1114..2012 | 17..915 | 4495 | 100 | Plus |
elB-RD | 3326 | CG4220-RD | 1114..2015 | 17..915 | 4455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14392229..14393059 | 915..85 | 4155 | 100 | Minus |
2L | 23513712 | 2L | 14408368..14408436 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 15:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2512 | 322..494 | 132 | 57.5 | Plus |
BO05229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:53 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-PC | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:42 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4220-PC | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:06 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2013 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:58 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2013 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:58 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14392228..14393058 | 86..917 | 99 | <- | Minus |
2L | 14408368..14408436 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:06 Download gff for
BO05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14392228..14393058 | 86..917 | 99 | <- | Minus |
arm_2L | 14408368..14408436 | 17..85 | 100 | | Minus |
BO05229.complete Sequence
1690 bp (1690 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ629999
> BO05229.complete
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATGTCGCCACACCACGCCATGTTCAAGGCGTCGGCGATG
AATCCGTATCTGAACTACGCCCGAATGAAGGGGCTGACGGAGCAGTCGAT
GATGGCGGCCACGCCGAATGTGTGCCGCGATCCCTATTGCACCGGATGTC
CGGCCAGTCCGCACTACATAAACAAGGCGGCAGGTCAGCCGTGTCCGGCG
GGATGTCCGCAGTGCGAGGGAGGTGGAGGCGGCGGAGGTGGTTCATCCAA
ATCCAGCGGAAGCCAAGGCGGATCGGGTGGTTCATCGAGTGCGGCAGCAG
CGGCGGCGGCGGCAGCTGCCTCCTCGTACCACGCCCAGTTGGCCGCCCTG
GCCGCTGCCTCCCAGATGCCGTACGTCTGCTCGTGGATCGGCAGCGATGC
CGCGTACTGTGGCAAGCGATTCGGCACCTCCGACGACCTGTTCCAGCATC
TGCGCACCCATACGGCCTCCGTTCCGGACGCAGTACTGAGTGCAGCGGCC
GCCGGCGGTATACCGCCCAATCATCCGCTTTTCCAGCGCACCTATCCCAC
CCCGCCGCTGAGTCCGCTGTCGGCGGCCCGTTATCATCCGTACGGTAAGC
CATCGATGCTGCCGCCCTCGTTGGCGCCACCCGGAATGCCCGGACTGCCG
CCACATCCGGCGCTGGCCCAATATTTTGCACCGTACTCGTTATACGGTCC
CAGGATGGGATCTTCGCATCCGGCAAGCTTTCTAGACCAT
BO05229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 1659 | CG4220-PC | 1..1656 | 17..1672 | 8280 | 100 | Plus |
elB-RD | 1662 | CG4220-PD | 1..1659 | 17..1672 | 8215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 3323 | CG4220-RC | 1114..2769 | 17..1672 | 8280 | 100 | Plus |
elB-RD | 3326 | CG4220-RD | 1114..2772 | 17..1672 | 8215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14392228..14393059 | 916..85 | 4160 | 100 | Minus |
2L | 23513712 | 2L | 14391182..14391940 | 1672..914 | 3795 | 100 | Minus |
2L | 23513712 | 2L | 14408368..14408436 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:35:20 has no hits.
BO05229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:17 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1..1659 | 17..1673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:26 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1112..2767 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:19 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2769 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:17 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1112..2767 | 17..1672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:07 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2769 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:07 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14391180..14391939 | 915..1674 | 99 | <- | Minus |
2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
2L | 14408368..14408436 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:19 Download gff for
BO05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14391180..14391939 | 915..1674 | 99 | <- | Minus |
arm_2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
arm_2L | 14408368..14408436 | 17..85 | 100 | | Minus |
BO05229.pep Sequence
Translation from 16 to 1690
> BO05229.pep
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HPASFLDH
BO05229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-PC | 552 | CG4220-PC | 1..552 | 1..552 | 2882 | 100 | Plus |
elB-PD | 553 | CG4220-PD | 1..553 | 1..552 | 2870 | 99.8 | Plus |
noc-PB | 537 | CG4491-PB | 15..536 | 6..551 | 662 | 35.5 | Plus |
noc-PA | 537 | CG4491-PA | 15..536 | 6..551 | 662 | 35.5 | Plus |
Muc91C-PB | 949 | CG7709-PB | 556..934 | 66..519 | 174 | 24.8 | Plus |