Clone BO05229 Report

Search the DGRC for BO05229

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptelB-RC
Protein status:BO05229.pep: validated full length
Sequenced Size:1690

Clone Sequence Records

BO05229.3prime Sequence

948 bp (840 high quality bases) assembled on 2005-12-02

> BO05229.3prime
ATGGTCTAGAAAGCTTGCCGGATGCGAAGATCCCATCCTGGGACCGTATA
ACGAGTACGGTGCAAAATATTGGGCCAGCGCCGGATGTGGCGGCAGTCCG
GGCATTCCGGGTGGCGCCAACGAGGGCGGCAGCATCGATGGCTTACCGTA
CGGATGATAACGGGCCGCCGACAGCGGACTCAGCGGCGGGGTGGGATAGG
TGCGCTGGAAAAGCGGATGATTGGGCGGTATACCGCCGGCGGCCGCTGCA
CTCAGTACTGCGTCCGGAACGGAGGCCGTATGGGTGCGCAGATGCTGGAA
CAGGTCGTCGGAGGTGCCGAATCGCTTGCCACAGTACGCGGCATCGCTGC
CGATCCACGAGCAGACGTACGGCATCTGGGAGGCAGCGGCCAGGGCGGCC
AACTGGGCGTGGTACGAGGAGGCAGCTGCCGCCGCCGCCGCTGCTGCCGC
ACTCGATGAACCACCCGATCCGCCTTGGCTTCCGCTGGATTTGGATGAAC
CACCTCCGCCGCCTCCACCTCCCTCGCACTGCGGACATCCCGCCGGACAC
GGCTGACCTGCCGCCTTGTTTATGTAGTGCGGACTGGCCGGACATCCGGT
GCAATAGGGATCGCGGCACACATTCGGCGTGGCCGCCATCATCGACTGCT
CCGTCAGCCCCTTCATTCGGGCGTAGTTCAGATACGGATTCATCGCCGAC
GCCTTGAACATGGCGTGGTGTGGCGACATCAACGAGCTGGCGGTCATCAA
GTCCATGGAATAGGGGCTGCCGTAACCGGGTGGATAATAGGATGCAGCAG
CTGCTGCTGCTGAGGCGGATCCTTGCTGGCTGGCCGCGTGCAGAGCCTTC
ACATAGTTGGCCTCCTTGGCGGCGGCGAGGGCGGCTTCCTGCAGGCGATT
CGAGCTGGCGATTTGGGCAGCCGCCGCCGCTGCCGCTGCCGCTGCACT

BO05229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4220-PC 1659 elB-RC 727..1656 948..19 4650 100 Minus
CG4220-PA 2037 elB-RA 1276..2034 777..19 3795 100 Minus
CG4220-PB 2457 elB-RB 1276..1907 777..146 3160 100 Minus
CG4220-PA 2037 elB-RA 1045..1216 948..777 860 100 Minus
CG4220-PB 2457 elB-RB 1045..1216 948..777 860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RD 3326 CG4220-RD 1843..2772 948..19 4650 100 Minus
elB-RC 3323 CG4220-RC 1840..2769 948..19 4650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14391182..14391940 19..777 3795 100 Plus
2L 23513712 2L 14392228..14392401 775..948 870 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:39:27 has no hits.

BO05229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:53 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-PC 727..1659 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:41 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4220-PC 727..1659 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:44:39 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1840..2769 19..948 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:40 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1840..2769 19..948 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:40 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14391182..14391939 19..776 100 <- Plus
2L 14392230..14392401 777..948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:44:39 Download gff for BO05229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14391182..14391939 19..776 100 <- Plus
arm_2L 14392230..14392401 777..948 100   Plus

BO05229.5prime Sequence

918 bp (826 high quality bases) assembled on 2005-12-02

> BO05229.5prime
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGGTA

BO05229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4220-PC 1659 elB-RC 1..899 17..915 4495 100 Plus
CG4220-PA 2037 elB-RA 387..1216 85..914 4150 100 Plus
CG4220-PB 2457 elB-RB 387..1216 85..914 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 3323 CG4220-RC 1114..2012 17..915 4495 100 Plus
elB-RD 3326 CG4220-RD 1114..2015 17..915 4455 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14392229..14393059 915..85 4155 100 Minus
2L 23513712 2L 14408368..14408436 85..17 345 100 Minus
Blast to na_te.dros performed 2015-02-12 15:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2512 322..494 132 57.5 Plus

BO05229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:53 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-PC 1..900 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:42 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4220-PC 1..900 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:06 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2013 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:58 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2013 17..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:58 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14392228..14393058 86..917 99 <- Minus
2L 14408368..14408436 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:06 Download gff for BO05229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14392228..14393058 86..917 99 <- Minus
arm_2L 14408368..14408436 17..85 100   Minus

BO05229.complete Sequence

1690 bp (1690 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ629999

> BO05229.complete
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATGTCGCCACACCACGCCATGTTCAAGGCGTCGGCGATG
AATCCGTATCTGAACTACGCCCGAATGAAGGGGCTGACGGAGCAGTCGAT
GATGGCGGCCACGCCGAATGTGTGCCGCGATCCCTATTGCACCGGATGTC
CGGCCAGTCCGCACTACATAAACAAGGCGGCAGGTCAGCCGTGTCCGGCG
GGATGTCCGCAGTGCGAGGGAGGTGGAGGCGGCGGAGGTGGTTCATCCAA
ATCCAGCGGAAGCCAAGGCGGATCGGGTGGTTCATCGAGTGCGGCAGCAG
CGGCGGCGGCGGCAGCTGCCTCCTCGTACCACGCCCAGTTGGCCGCCCTG
GCCGCTGCCTCCCAGATGCCGTACGTCTGCTCGTGGATCGGCAGCGATGC
CGCGTACTGTGGCAAGCGATTCGGCACCTCCGACGACCTGTTCCAGCATC
TGCGCACCCATACGGCCTCCGTTCCGGACGCAGTACTGAGTGCAGCGGCC
GCCGGCGGTATACCGCCCAATCATCCGCTTTTCCAGCGCACCTATCCCAC
CCCGCCGCTGAGTCCGCTGTCGGCGGCCCGTTATCATCCGTACGGTAAGC
CATCGATGCTGCCGCCCTCGTTGGCGCCACCCGGAATGCCCGGACTGCCG
CCACATCCGGCGCTGGCCCAATATTTTGCACCGTACTCGTTATACGGTCC
CAGGATGGGATCTTCGCATCCGGCAAGCTTTCTAGACCAT

BO05229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 1659 CG4220-PC 1..1656 17..1672 8280 100 Plus
elB-RD 1662 CG4220-PD 1..1659 17..1672 8215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 3323 CG4220-RC 1114..2769 17..1672 8280 100 Plus
elB-RD 3326 CG4220-RD 1114..2772 17..1672 8215 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14392228..14393059 916..85 4160 100 Minus
2L 23513712 2L 14391182..14391940 1672..914 3795 100 Minus
2L 23513712 2L 14408368..14408436 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:35:20 has no hits.

BO05229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:17 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1..1659 17..1673 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:26 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1112..2767 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:19 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2769 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:17 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1112..2767 17..1672 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:07 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2769 17..1674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:07 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14391180..14391939 915..1674 99 <- Minus
2L 14392230..14393058 86..914 100 <- Minus
2L 14408368..14408436 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:19 Download gff for BO05229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14391180..14391939 915..1674 99 <- Minus
arm_2L 14392230..14393058 86..914 100 <- Minus
arm_2L 14408368..14408436 17..85 100   Minus

BO05229.pep Sequence

Translation from 16 to 1690

> BO05229.pep
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HPASFLDH

BO05229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
elB-PC 552 CG4220-PC 1..552 1..552 2882 100 Plus
elB-PD 553 CG4220-PD 1..553 1..552 2870 99.8 Plus
noc-PB 537 CG4491-PB 15..536 6..551 662 35.5 Plus
noc-PA 537 CG4491-PA 15..536 6..551 662 35.5 Plus
Muc91C-PB 949 CG7709-PB 556..934 66..519 174 24.8 Plus