Clone BO05231 Report

Search the DGRC for BO05231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptMlp60A-RE
Protein status:BO05231.pep: validated full length
Sequenced Size:310

Clone Sequence Records

BO05231.3prime Sequence

308 bp (307 high quality bases) assembled on 2005-12-02

> BO05231.3prime
ATGGTCTAGAAAGCTTGCCTCTCTGTTTAAGTGGGCGCCAGTGTCCGTGG
ACAGGCAGCCGGCACCACCACCGAAACCGTATCCCTTGGGACCGTATTTG
CGACCATGGCAGTTTTTGCAGAAAAGCTCCTTCTCGTGCTCCGTGCAGTT
GGTCGAGTCCAGGGCCTTGTTGCACATGCTGCACTTGAAGCAGGTCTTGT
GGAATTTGTAGCCTCCGGCAACGCGCTCCTCGGCAGCGTAGACCGACTTG
CCGCACGCGGGGCACTTGGGGGTTTCAACGGGAACGAAAGGCATGTCGAC
TGATAACT

BO05231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG33149-PA 279 Mlp60A-RA 1..276 294..19 1380 100 Minus
CG1019-PA 1488 Mlp84B-RA 93..165 205..133 190 90.4 Minus
CG1019-PB 1488 Mlp84B-RB 93..165 205..133 190 90.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..358 294..19 1380 100 Minus
Mlp60A-RF 670 CG42309-RF 50..325 294..19 1380 100 Minus
Mlp60A-RC 2468 CG42309-RC 493..767 294..20 1375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075609 179..19 805 100 Minus
2R 25286936 2R 24075223..24075338 294..179 580 100 Minus
3R 32079331 3R 7115504..7115734 42..272 420 78.8 Plus
Blast to na_te.dros performed on 2015-02-13 02:22:39 has no hits.

BO05231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:54 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 15..294 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:43 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 15..294 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:36:31 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 73..362 14..303 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:22:34 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 40..329 14..303 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:22:34 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24075213..24075337 180..303 97 -> Minus
2R 24075449..24075613 14..179 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:36:31 Download gff for BO05231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962736..19962860 180..303 97 -> Minus
arm_2R 19962972..19963136 14..179 98   Minus

BO05231.5prime Sequence

308 bp (307 high quality bases) assembled on 2005-12-02

> BO05231.5prime
GAAGTTATCAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCC
CCGCGTGCGGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGC
TACAAATTCCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCT
GGACTCGACCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACT
GCCATGGTCGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCC
GGCTGCCTGTCCACGGACACTGGCGCCCACTTAAACAGAGAGGCAAGCTT
TCTAGACC

BO05231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG33149-PA 279 Mlp60A-RA 1..276 17..292 1380 100 Plus
CG1019-PA 1488 Mlp84B-RA 93..165 106..178 190 90.4 Plus
CG1019-PB 1488 Mlp84B-RB 93..165 106..178 190 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..358 17..292 1380 100 Plus
Mlp60A-RF 670 CG42309-RF 50..325 17..292 1380 100 Plus
Mlp60A-RC 2468 CG42309-RC 493..767 17..291 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075609 132..292 805 100 Plus
2R 25286936 2R 24075223..24075338 17..132 580 100 Plus
3R 32079331 3R 7115504..7115734 269..39 420 78.8 Minus
Blast to na_te.dros performed on 2015-02-13 05:48:24 has no hits.

BO05231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:55 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..296 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:45 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..296 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:25 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 73..362 8..297 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:44 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 40..329 8..297 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:44 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24075213..24075337 8..131 97 -> Plus
2R 24075449..24075613 132..297 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:25 Download gff for BO05231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962736..19962860 8..131 97 -> Plus
arm_2R 19962972..19963136 132..297 98   Plus

BO05231.complete Sequence

310 bp (310 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ630000

> BO05231.complete
GAAGTTATCAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCC
CCGCGTGCGGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGC
TACAAATTCCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCT
GGACTCGACCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACT
GCCATGGTCGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCC
GGCTGCCTGTCCACGGACACTGGCGCCCACTTAAACAGAGAGGCAAGCTT
TCTAGACCAT

BO05231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 279 CG42309-PE 1..276 17..292 1380 100 Plus
Mlp60A-RF 279 CG42309-PF 1..276 17..292 1380 100 Plus
Mlp60A-RC 1461 CG42309-PC 1..275 17..291 1375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..358 17..292 1380 100 Plus
Mlp60A-RF 670 CG42309-RF 50..325 17..292 1380 100 Plus
Mlp60A-RC 2468 CG42309-RC 493..767 17..291 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075609 132..292 805 100 Plus
2R 25286936 2R 24075223..24075338 17..132 580 100 Plus
3R 32079331 3R 7115504..7115734 269..39 420 78.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:34:55 has no hits.

BO05231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:48 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 1..279 17..296 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:07 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 72..361 8..297 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:09 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 83..358 17..294 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:48 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 72..361 8..297 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:49 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 50..325 17..294 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:49 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24075223..24075337 17..131 100 -> Plus
2R 24075449..24075609 132..294 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:09 Download gff for BO05231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962972..19963132 132..294 98   Plus
arm_2R 19962746..19962860 17..131 100 -> Plus

BO05231.pep Sequence

Translation from 16 to 310

> BO05231.pep
MPFVPVETPKCPACGKSVYAAEERVAGGYKFHKTCFKCSMCNKALDSTNC
TEHEKELFCKNCHGRKYGPKGYGFGGGAGCLSTDTGAHLNREASFLDH

BO05231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-PE 92 CG33149-PA 1..92 1..92 530 100 Plus
Mlp60A-PF 92 CG42309-PF 1..92 1..92 530 100 Plus
Mlp60A-PC 486 CG42309-PC 1..92 1..92 530 100 Plus
Mlp60A-PB 486 CG42309-PB 1..92 1..92 530 100 Plus
Mlp84B-PC 495 CG1019-PC 4..93 3..92 410 76.7 Plus
Mlp60A-PC 486 CG42309-PC 213..301 11..96 207 44.9 Plus
Mlp60A-PB 486 CG42309-PB 213..301 11..96 207 44.9 Plus
Mlp60A-PC 486 CG42309-PC 96..174 2..76 203 45.6 Plus
Mlp60A-PB 486 CG42309-PB 96..174 2..76 203 45.6 Plus
Mlp60A-PC 486 CG42309-PC 412..484 11..82 180 45.2 Plus
Mlp60A-PB 486 CG42309-PB 412..484 11..82 180 45.2 Plus
Mlp60A-PC 486 CG42309-PC 299..390 2..84 173 35.9 Plus
Mlp60A-PB 486 CG42309-PB 299..390 2..84 173 35.9 Plus