Clone BO05242 Report

Search the DGRC for BO05242

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG18011-RA
Protein status:BO05242.pep: Imported from assembly
Sequenced Size:2989

Clone Sequence Records

BO05242.3prime Sequence

877 bp (875 high quality bases) assembled on 2005-12-02

> BO05242.3prime
ATGGTCTAGAAAGCTTGCATTCTGTGTGTCCTCATCTGGTATCTCGTCAA
TAAAATCGTCCGCCTCCTCGTCATCATCTTCCATCACTATGTCATCCCCA
TCTGCTTCCTCTATAAACTCATTATTTTCATTTAGGCGGCGCTTTTTAGA
TGTGGATGGCGCATCATCGGTGATGTATTCGTCCTCCTCAACCACATCCT
CCTGGAGCAAAATGATGCCATCGTGAATCTTTCGGACATGCACATTCAAC
TGGGAACTGTTTACAAAAGTCCGTCCACAGCCGCCGTCGAAATAGTCGCG
GCACGTGTATTTATCACCATGGGCTCGCTGCATGTGCGTCTTCAATCCTT
GACTGCGTCCAAACCTCTTTTTACACACGTTGCACTCGAACGCGAATCGC
TTGTAGTGCTGACCAAGAACATGAACAGAAAGGGACTTTTTGTTCCTGGT
GGTGAAACTGCACTGTTCGCAGCTGTAAGACTGCCCATGAAGCTTTTGAT
GAGCTTCCATTTCACTCTTGTGATAAAAGCCCTTTTGACAGACACTGCAG
GAATAGCGCTTCTTATTCGAATGCACCACATTGACATGAGTGTCATAATT
TCGTCGGTTTTTGACGATTTTAAAGCACTCAGGACACTCTATTGGTTCAT
GCCAATAGGCATGGTGCTTGGCCAGAGCATCATGGCTTTTGTACGAAGAA
TTGCATAACGGACAAGTGACGTTGTCATTGTTATGACTCCTTGCCACATG
AACAGACAAGGACATCTTTGACCGGCATTCCTTTAAGCAAAACTGGCAAA
CCCATTCCTGGGCAGACTTTGAACTCTTCTCGGCCTGCTTGCTCGCGGAT
TCGTGTGTGCGCCGCTTGTGTGTGTAC

BO05242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 2958 CG18011-RA 2097..2955 877..19 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 2144..3002 877..19 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10145404..10145879 494..19 2380 100 Minus
2R 25286936 2R 10145116..10145349 726..493 1170 100 Minus
2R 25286936 2R 10144907..10145058 877..726 760 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:47:52 has no hits.

BO05242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:56 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 2097..2958 15..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:46 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 2097..2958 15..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:09:55 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 2144..3006 14..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:09 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 2144..3006 14..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:09 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10144907..10145058 726..877 100 -> Minus
2R 10145117..10145349 493..725 100 -> Minus
2R 10145406..10145883 14..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:09:55 Download gff for BO05242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6032412..6032563 726..877 100 -> Minus
arm_2R 6032622..6032854 493..725 100 -> Minus
arm_2R 6032911..6033388 14..492 99   Minus

BO05242.5prime Sequence

798 bp (791 high quality bases) assembled on 2005-12-02

> BO05242.5prime
GAAGTTATCAGTCGACATGTCGGAAAACGCGAAAAACAATAGCTGCCTGC
ATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAG
TTTGGAATCGAACTGGGACTGCAGTCCCTGCTGTCCAGGCATTACCAGCT
CGAAGTGTCGCCCGATCCGCAGAAGCAGCAACTCCTGTGCGAAGTGTGTG
TCACCAATCTCATTCGCCTCTTTGACATCGATGAACTGGAAAGAGAACGG
GAAGCTGCGAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGA
CCCCATTATTATTACCGAGGTCCAGGCAACTCCACCAGCTGCGAAACCAG
CCAAGAAAACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTG
CCCATTATTCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGC
TGCTGCTTCCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAG
AGACGCCTTCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTT
TCTAAAGTAGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCT
GGACGAAGAGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGT
CCAGTGAAGCTGTCCAGGTCACAGAGGAAACAGAAGCCCCTGGCCAAATA
GTCATCCTAAACAGCGAGGCTGTGACAGACACCAATCCGGATGAGAATGT
TTACATATACGAGCATGAGGATGTTATGGATCCAAATTTGGACAATGT

BO05242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 2958 CG18011-RA 1..782 17..798 3910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 48..829 17..798 3910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10142385..10143138 17..770 3770 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:47:46 has no hits.

BO05242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:19:57 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:47 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:18 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..829 17..798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:45 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..829 17..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:45 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10142379..10143138 11..770 99 -> Plus
2R 10143193..10143220 771..798 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:18 Download gff for BO05242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6029884..6030643 11..770 99 -> Plus
arm_2R 6030698..6030725 771..798 100   Plus

BO05242.complete Sequence

2989 bp assembled on 2008-08-14

GenBank Submission: FJ630001

> BO05242.complete
GAAGTTATCAGTCGACATGTCGGAAAACGCGAAAAACAATAGCTGCCTGC
ATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAG
TTTGGAATCGAACTGGGACTGCAGTCCCTGCTGTCCAGGCATTACCAGCT
CGAAGTGTCGCCCGATCCGCAGAAGCAGCAACTCCTGTGCGAAGTGTGTG
TCACCAATCTCATTCGCCTCTTTGACATCGATGAACTGGAAAGAGAACGG
GAAGCTGCGAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGA
CCCCATTATTATTACCGAGGTCCAGGCAACTCCACCAGCTGCGAAACCAG
CCAAGAAAACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTG
CCCATTATTCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGC
TGCTGCTTCCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAG
AGACGCCTTCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTT
TCTAAAGTAGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCT
GGACGAAGAGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGT
CCAGTGAAGCTGTCCAGGTCACAGAGGAAACAGAAGCCCCTGGCCAAATA
GTCATCCTAAACAGCGAGGCTGTGACAGACACCAATCCGGATGAGAATGT
TTACATATACGAGCATGAGGATGTTATGGATCCAAATTTGGACAATGTTA
AGGTAAAACCCATAAGTTGTTCGTCTAGATTGGTAGCTCAAGCTGAGGAA
AGTCAAAGCGATGATGACATCGACGAGGGAGAGACTAGCAATGTTGTTCT
GTTTAACTTTGTGGACATCAAAGAGAAGGATGAAGTTGATAATATTCCGG
AGTACTTGGCCACCGTGGTGAAGACGAGCTTTGAAAAGCTGACATTTCAG
TGGTGCACTGTGTGCAAGCACTGCTCTCTGAAATGTCCCACATTCGAGAG
CCTTTTTAGTCACTTGTCAAAGGCACACAAAAGCCGGAGAGATGTCTACG
AGTGTCCCATCGAAGGATGCAACAAGGAGTTGAAAGGTCGCAAATTCCTA
GCCATGCATCTTGTTTTGTTGCACGCGCCAGTGGCTGAAATTCCGATCTA
CGGCAGCTGTCCGGAATGTAAATTGACGTTCTCCAACATTCTGCAGTACA
ACAAGCATTCTTGCGCGCATGTAATAAAAAAGAAGCGAGGTTTTCGCTCT
TATTGTGAAATGTGTTCGCTGGAGTTTCCTTCCTGGAAGCGTTTTAATTT
CCACAGCCAGTTTCACTTAGAAAAGCACAGACCAAGAGCTTGCTTCGTCT
GTGACTATGCCACCACGAACATAGATGAACTTTTTCAGCATTTAAATTAT
TCTCATGAGCCAGTGGGCACCTTATTCTGCGACCTTTGCGACCGCACTTT
CCGGGACCCCTCCGTTTTTATGGAGCACAATAAGTCGCATGCCAATGTTA
GCAGCACGACCTACTCTTGCAGCGAATGTATGGCCAACTTTGAGTCGCGG
GGCCGGCTAAATGGACACATGAGAGCCATGCACGGCAGTGTAATAAGCTG
TGAACTTTGTTCCCGGGAATTTGCCACCGAAGCTACTTACAATATTCACA
TGAAGAAGCATCTGATCATCGAAAAAGATGTGCACGTGTGCAGCACCTGC
GGTCTATTAAGTGATAGCCGCGAAACCCTCCTAGCCCATGTAAATTCCGT
GAAGACAGCCTGTTTTGGCTCGAAGATAGACGTGGAACTCCTACGGGATG
CTTATGTGTGCGAGTACTGTTCCTCGTACTTCAAGGAAAAGGACTGTCTT
CAAGCCCATCGCGATTCCGGGGTACATAAAGATGGAGTGTTTTTGTGTCA
GCCCTGCGGCAAAGAATTCCCACATATGAAACTTTATCGCCATCACCTGC
GCAACTATCAACAACTTCGATCGGACTCAACACATCGCAGGCTAGAAATA
TGTGTTTACTACATGTGCGACCAGGAAAACTGCACAGAGTCTTACGTGAA
CTGGAACTCCTTGTACACACACAAGCGGCGCACACACGAATCCGCGAGCA
AGCAGGCCGAGAAGAGTTCAAAGTCTGCCCAGGAATGGGTTTGCCAGTTT
TGCTTAAAGGAATGCCGGTCAAAGATGTCCTTGTCTGTTCATGTGGCAAG
GAGTCATAACAATGACAACGTCACTTGTCCGTTATGCAATTCTTCGTACA
AAAGCCATGATGCTCTGGCCAAGCACCATGCCTATTGGCATGAACCAATA
GAGTGTCCTGAGTGCTTTAAAATCGTCAAAAACCGACGAAATTATGACAC
TCATGTCAATGTGGTGCATTCGAATAAGAAGCGCTATTCCTGCAGTGTCT
GTCAAAAGGGCTTTTATCACAAGAGTGAAATGGAAGCTCATCAAAAGCTT
CATGGGCAGTCTTACAGCTGCGAACAGTGCAGTTTCACCACCAGGAACAA
AAAGTCCCTTTCTGTTCATGTTCTTGGTCAGCACTACAAGCGATTCGCGT
TCGAGTGCAACGTGTGTAAAAAGAGGTTTGGACGCAGTCAAGGATTGAAG
ACGCACATGCAGCGAGCCCATGGTGATAAATACACGTGCCGCGACTATTT
CGACGGCGGCTGTGGACGGACTTTTGTAAACAGTTCCCAGTTGAATGTGC
ATGTCCGAAAGATTCACGATGGCATCATTTTGCTCCAGGAGGATGTGGTT
GAGGAGGACGAATACATCACCGATGATGCGCCATCCACATCTAAAAAGCG
CCGCCTAAATGAAAATAATGAGTTTATAGAGGAAGCAGATGGGGATGACA
TAGTGATGGAAGATGATGACGAGGAGGCGGACGATTTTATTGACGAGATA
CCAGATGAGGACACACAGAATGCAAGCTTTCTAGACCAT

BO05242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 2958 CG18011-PA 1..2955 17..2971 14775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 48..3002 17..2971 14775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10142385..10143138 17..770 3770 100 Plus
2R 25286936 2R 10145404..10145879 2496..2971 2380 100 Plus
2R 25286936 2R 10144353..10144809 1621..2077 2285 100 Plus
2R 25286936 2R 10143409..10143670 927..1188 1310 100 Plus
2R 25286936 2R 10145116..10145349 2264..2497 1170 100 Plus
2R 25286936 2R 10144872..10145058 2078..2264 935 100 Plus
2R 25286936 2R 10143192..10143348 770..926 785 100 Plus
2R 25286936 2R 10143730..10143882 1189..1341 765 100 Plus
2R 25286936 2R 10143944..10144088 1341..1485 725 100 Plus
2R 25286936 2R 10144142..10144277 1486..1621 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:59:27 has no hits.

BO05242.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:52 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 46..3004 17..2976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:43 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..3002 17..2973 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:22 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 46..3000 17..2973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:39 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..3002 17..2973 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:39 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10142385..10143138 17..770 100 -> Plus
2R 10143193..10143348 771..926 100 -> Plus
2R 10143409..10143670 927..1188 100 -> Plus
2R 10143730..10143882 1189..1341 100 -> Plus
2R 10143945..10144088 1342..1485 100 -> Plus
2R 10144142..10144277 1486..1621 100 -> Plus
2R 10144354..10144809 1622..2077 100 -> Plus
2R 10144872..10145058 2078..2264 100 -> Plus
2R 10145117..10145349 2265..2497 100 -> Plus
2R 10145406..10145879 2498..2973 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:43 Download gff for BO05242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6029890..6030643 17..770 100 -> Plus
arm_2R 6030698..6030853 771..926 100 -> Plus
arm_2R 6030914..6031175 927..1188 100 -> Plus
arm_2R 6031235..6031387 1189..1341 100 -> Plus
arm_2R 6031450..6031593 1342..1485 100 -> Plus
arm_2R 6031647..6031782 1486..1621 100 -> Plus
arm_2R 6031859..6032314 1622..2077 100 -> Plus
arm_2R 6032377..6032563 2078..2264 100 -> Plus
arm_2R 6032622..6032854 2265..2497 100 -> Plus
arm_2R 6032911..6033384 2498..2973 99   Plus

BO05242.pep Sequence

Translation from 16 to 2989

> BO05242.pep
MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLSRHYQLEVSPD
PQKQQLLCEVCVTNLIRLFDIDELEREREAAKDAAQGKDSKAEEDPIIIT
EVQATPPAAKPAKKTVPSRPLTKVLRPVPIIPTREPSARIRNRAAAASNV
TPDTSRSPEPPETPSTEDAVSKSEPKLVSKVADQEHFSVLIQNILDEEEA
VVEDETAVKEESSEAVQVTEETEAPGQIVILNSEAVTDTNPDENVYIYEH
EDVMDPNLDNVKVKPISCSSRLVAQAEESQSDDDIDEGETSNVVLFNFVD
IKEKDEVDNIPEYLATVVKTSFEKLTFQWCTVCKHCSLKCPTFESLFSHL
SKAHKSRRDVYECPIEGCNKELKGRKFLAMHLVLLHAPVAEIPIYGSCPE
CKLTFSNILQYNKHSCAHVIKKKRGFRSYCEMCSLEFPSWKRFNFHSQFH
LEKHRPRACFVCDYATTNIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSV
FMEHNKSHANVSSTTYSCSECMANFESRGRLNGHMRAMHGSVISCELCSR
EFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACF
GSKIDVELLRDAYVCEYCSSYFKEKDCLQAHRDSGVHKDGVFLCQPCGKE
FPHMKLYRHHLRNYQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLY
THKRRTHESASKQAEKSSKSAQEWVCQFCLKECRSKMSLSVHVARSHNND
NVTCPLCNSSYKSHDALAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVV
HSNKKRYSCSVCQKGFYHKSEMEAHQKLHGQSYSCEQCSFTTRNKKSLSV
HVLGQHYKRFAFECNVCKKRFGRSQGLKTHMQRAHGDKYTCRDYFDGGCG
RTFVNSSQLNVHVRKIHDGIILLQEDVVEEDEYITDDAPSTSKKRRLNEN
NEFIEEADGDDIVMEDDDEEADDFIDEIPDEDTQNASFLDH

BO05242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 985 CG18011-PA 1..985 1..985 5304 100 Plus
CG5245-PA 501 CG5245-PA 81..436 515..914 354 27 Plus
crol-PF 907 CG14938-PF 219..607 484..914 325 25.3 Plus
crol-PF 907 CG14938-PF 223..670 430..917 322 24.4 Plus
crol-PI 962 CG14938-PI 219..662 484..914 315 23.8 Plus
crol-PE 962 CG14938-PE 219..662 484..914 315 23.8 Plus
crol-PI 962 CG14938-PI 278..727 397..887 304 23.5 Plus
crol-PI 962 CG14938-PI 251..725 430..917 303 23.8 Plus
CG5245-PA 501 CG5245-PA 84..491 398..852 302 24.1 Plus
crol-PI 962 CG14938-PI 223..638 430..919 294 22.3 Plus
crol-PI 962 CG14938-PI 216..606 568..915 234 22.1 Plus
crol-PF 907 CG14938-PF 291..676 345..781 228 23.2 Plus
crol-PI 962 CG14938-PI 335..731 333..781 217 22 Plus
CG5245-PA 501 CG5245-PA 179..490 313..631 163 22.4 Plus