Clone Sequence Records
BO05245.3prime Sequence
967 bp (871 high quality bases) assembled on 2005-12-02
> BO05245.3prime
ATGGTCTAGAAAGCTTGCGTGATTCCTCAGTGCCTCGTTGATGACACGCA
GAATATCAATTTGCAGTTCGGTAAAAGCCACCGGCTCCAGCTGAGCATTG
CGTATCTTCATGGACACAGCCTTGAAGAACGCACCTATCTCATCGTCCTC
TCCGGAGTTGTGGCCATTGCTGGAGGGATACTCCATATGGGTGGGTTTGC
TGGGCGTAATGGGCGCCGAGTGATAGCGAGACGTGGAAGTAGAGCTTGGC
GTAGTGGCAGCATTCTGGTACCTAGGCGTGGTTGGAGTCTGTATCTCGAT
CTTCTGGAACTCCGCAGTTGATTGAAGCTGCTGATTTTCCAGGCTGGTGG
CCCCGTCGCTGAGCTGCTCTTGCTTGGACATGGCACTGCCAACGCTTGGA
ACAGCCATGTAAACGGGTCCATCTTCGTGATCGTAAGTCATTACATGCTG
ATCCTGCTGCTGAGGAGGTTGTTCCGCCGCCGTTGTGGTTTCCATCTCCT
CATCCTCATCGTCTTCCACATCATCATCATTATGGTGTACATCTCCGTTG
ATGTAATTCTCGATGTCCATGTCGTCATAGGTGGCCACACAGAGTTCACT
TGCCTGCTGTTGCTGTTGTTGCTGCTGATGCTGTTGTTGCTGTTGGTGCT
GCTCTTCCTGCTGTTGCTGTTGTTGTTGTTGCTCAGCCTTGTGTGGTCCC
GTCAAATGAGGCAGGGTGGGCAAGTTAAGCTGGGAATTCGACGAAGACGA
CTCTAGGGTGATCTGCTGCGTGGGCGGTGAGTGAGACTGGGTCATATGGT
CCTCGAGTTCCCTCACCGGGTCATTTTTGGGTAGCAGCATACTGAGTTGC
GAATCGCTTTCCAGCGTCTTTTGTTGTATGTACTTCTGAAAGGAACTGAG
CGAATTATAGTGCTTCCAACGCGATGTGGCATCTATGTGCATCAGTGTCC
TCAATCGCTTGTGTTCG
BO05245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 2073 | CG8765-RA | 1122..2070 | 967..19 | 4695 | 99.7 | Minus |
| CG8765-PB | 1803 | CG8765-RB | 852..1800 | 967..19 | 4695 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RC | 3076 | CG8765-RC | 1234..2182 | 967..19 | 4715 | 99.8 | Minus |
| CG8765-RB | 3020 | CG8765-RB | 1178..2126 | 967..19 | 4715 | 99.8 | Minus |
| CG8765-RA | 3082 | CG8765-RA | 1240..2188 | 967..19 | 4715 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19684835..19685678 | 19..862 | 4220 | 100 | Plus |
| 3L | 28110227 | 3L | 19685737..19685842 | 862..967 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:38:42 has no hits.
BO05245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:00 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PB | 852..1803 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:51 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PB | 852..1803 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:08 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 1240..2192 | 13..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:39:44 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 1240..2192 | 13..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:39:44 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19684831..19685678 | 13..862 | 99 | <- | Plus |
| 3L | 19685738..19685842 | 863..967 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:08 Download gff for
BO05245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19677931..19678778 | 13..862 | 99 | <- | Plus |
| arm_3L | 19678838..19678942 | 863..967 | 98 | | Plus |
BO05245.5prime Sequence
817 bp (816 high quality bases) assembled on 2005-12-02
> BO05245.5prime
GAAGTTATCAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGG
AGCACCAGCAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGT
CTGGGTGAGAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCT
GGTCTCCCAGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCA
GCACCAAGATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGT
TGGTCCGACGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTA
CTGCCGGGAGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGA
AGTATTTCAAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAAT
TACAGAGGGAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGAC
CCCCTTATCGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCC
AGAATCTAAACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCC
ACGCTGCTCGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAA
GCCGGCAGCCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGC
AGCAGCAGCAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCG
AACTGGAACTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCAT
AGTGCAGTGTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACA
ACGAAATAGTGGACTGC
BO05245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 2073 | CG8765-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG8765-PB | 1803 | CG8765-RB | 1..531 | 287..817 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 3082 | CG8765-RA | 118..919 | 16..817 | 4010 | 100 | Plus |
| CG8765-RC | 3076 | CG8765-RC | 118..913 | 16..817 | 3910 | 99.3 | Plus |
| CG8765-RB | 3020 | CG8765-RB | 206..857 | 166..817 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19686229..19686646 | 817..400 | 2090 | 100 | Minus |
| 3L | 28110227 | 3L | 19686995..19687236 | 257..16 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 19686795..19686937 | 399..257 | 715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 36..90 | 120 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 19..75 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6765 | 39..75 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6786 | 39..75 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6807 | 39..75 | 113 | 78.4 | Plus |
BO05245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:01 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:52 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:28:43 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 113..919 | 10..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:20 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 113..919 | 10..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:20 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19686229..19686646 | 400..817 | 100 | <- | Minus |
| 3L | 19686795..19686936 | 258..399 | 100 | <- | Minus |
| 3L | 19686995..19687241 | 10..257 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:28:43 Download gff for
BO05245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19679329..19679746 | 400..817 | 100 | <- | Minus |
| arm_3L | 19679895..19680036 | 258..399 | 100 | <- | Minus |
| arm_3L | 19680095..19680341 | 10..257 | 99 | | Minus |
BO05245.complete Sequence
2104 bp assembled on 2008-08-14
GenBank Submission: KX798018
> BO05245.complete
GAAGTTATCAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGG
AGCACCAGCAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGT
CTGGGTGAGAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCT
GGTCTCCCAGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCA
GCACCAAGATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGT
TGGTCCGACGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTA
CTGCCGGGAGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGA
AGTATTTCAAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAAT
TACAGAGGGAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGAC
CCCCTTATCGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCC
AGAATCTAAACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCC
ACGCTGCTCGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAA
GCCGGCAGCCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGC
AGCAGCAGCAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCG
AACTGGAACTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCAT
AGTGCAGTGTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACA
ACGAAATAGTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCA
ACAATCACGTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGAC
GAACGCCGAGGAGGAGGACGACGATCCCATACACACATTTCTCAACATGG
AGAGCTACTTCGAAAAGGAACTGATCACGCTGATCCAGCAGGAAGACATG
ATCTACAACTACGGCAACGAGAACTATCGCAATGCCAAGCTCAAGATGGA
GGTGTGGGAGGAAATCGCCAGAAAACTAAAGAAGTCGGTGAAACAGTGTC
GACTGAAGTGGAAGGCTTTAAGGGACCAATACGCACGCGAACACAAGCGA
TTGAGGACACTGATGCACATAGATGCCACATCGCGTTGGAAGCACTATAA
TTCGCTCAGTTTCCTTCAGAAGTACATACAACAAAAGACGCTGGAAAGCG
ATTCGCAACTCAGTATGCTGCTACCCAAAAATGACCCGGTGAGGGAACTC
GAGGACCATATGACCCAGTCTCACTCACCGCCCACGCAGCAGATCACCCT
AGAGTCGTCTTCGTCGAATTCCCAGCTTAACTTGCCCACCCTGCCTCATT
TGACGGGACCACACAAGGCTGAGCAACAACAACAACAGCAACAGCAGGAA
GAGCAGCACCAACAGCAACAACAGCATCAGCAGCAACAACAGCAACAGCA
GGCAAGTGAACTCTGTGTGGCCACCTATGACGACATGGACATCGAGAATT
ACATCAACGGAGATGTACACCATAATGATGATGATGTGGAAGACGATGAG
GATGAGGAGATGGAAACCACAACGGCGGCGGAACAACCTCCTCAGCAGCA
GGATCAGCATGTAATGACTTACGATCACGAAGATGGACCCGTTTACATGG
CTGTTCCAAGCGTTGGCAGTGCCATGTCCAAGCAAGAGCAGCTCAGCGAC
GGGGCCACCAGCCTGGAAAATCAGCAGCTTCAATCAACTGCGGAGTTCCA
GAAGATCGAGATACAGACTCCAACCACGCCTAGGTACCAGAATGCTGCCA
CTACGCCAAGCTCTACTTCCACGTCTCGCTATCACTCGGCGCCCATTACG
CCCAGCAAACCCACCCATATGGAGTATCCCTCCAGCAATGGCCACAACTC
CGGAGAGGACGATGAGATAGGTGCGTTCTTCAAGGCTGTGTCCATGAAGA
TACGCAATGCTCAGCTGGAGCCGGTGGCTTTTACCGAACTGCAAATTGAT
ATTCTGCGTGTCATCAACGAGGCACTGAGGAATCACGCAAGCTTTCTAGA
CCAT
BO05245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 2073 | CG8765-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
| CG8765-RC | 2067 | CG8765-PC | 1..2064 | 17..2086 | 10225 | 99.7 | Plus |
| CG8765-RB | 1803 | CG8765-PB | 1..1800 | 287..2086 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 3082 | CG8765-RA | 118..2188 | 16..2086 | 10355 | 100 | Plus |
| CG8765-RC | 3076 | CG8765-RC | 118..2182 | 16..2086 | 10230 | 99.7 | Plus |
| CG8765-RB | 3020 | CG8765-RB | 206..2126 | 166..2086 | 9605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19684835..19685678 | 2086..1243 | 4220 | 100 | Minus |
| 3L | 28110227 | 3L | 19685958..19686646 | 1088..400 | 3445 | 100 | Minus |
| 3L | 28110227 | 3L | 19686995..19687236 | 257..16 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 19685737..19685892 | 1243..1088 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 19686795..19686937 | 399..257 | 715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 36..90 | 120 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 19..75 | 114 | 66.7 | Plus |
BO05245.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:54 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 118..2197 | 10..2092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:15 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 119..2188 | 17..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:17 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 124..2193 | 17..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:09 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 119..2188 | 17..2088 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:09 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19684831..19685678 | 1243..2088 | 99 | <- | Minus |
| 3L | 19685738..19685891 | 1089..1242 | 100 | <- | Minus |
| 3L | 19685958..19686646 | 400..1088 | 100 | <- | Minus |
| 3L | 19686795..19686936 | 258..399 | 100 | <- | Minus |
| 3L | 19686995..19687235 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:15 Download gff for
BO05245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19678838..19678991 | 1089..1242 | 100 | <- | Minus |
| arm_3L | 19677931..19678778 | 1243..2088 | 99 | <- | Minus |
| arm_3L | 19679058..19679746 | 400..1088 | 100 | <- | Minus |
| arm_3L | 19679895..19680036 | 258..399 | 100 | <- | Minus |
| arm_3L | 19680095..19680335 | 17..257 | 100 | | Minus |
BO05245.pep Sequence
Translation from 16 to 2104
> BO05245.pep
METLPCANQLQEHQQPQQQHVNLSIDPSLGENVVSIPKELILISLVSQEQ
SLYNPKHPHYRSTKIKDEKWLEIGSNVGWSDVQCKSKWKAMRDQYCRELK
RAKACSKAVKWKYFKELDFLRPYALARNYRGRSGQTSNGAVGTVTPLSLP
MTTSFSSNSSSQNLNLSGSIKIEDASASTLLDSCSFSSPSSTDKKPAATF
LASHIGAVLQQQQQQQQHQQQMHSQPEANWNYLTDAGGGATPSIIVQCGT
ANTTTVVDTLYNEIVDCVNAANQSSSAATITSNVSTTSAAHNQSTNAEEE
DDDPIHTFLNMESYFEKELITLIQQEDMIYNYGNENYRNAKLKMEVWEEI
ARKLKKSVKQCRLKWKALRDQYAREHKRLRTLMHIDATSRWKHYNSLSFL
QKYIQQKTLESDSQLSMLLPKNDPVRELEDHMTQSHSPPTQQITLESSSS
NSQLNLPTLPHLTGPHKAEQQQQQQQQEEQHQQQQQHQQQQQQQQASELC
VATYDDMDIENYINGDVHHNDDDVEDDEDEEMETTTAAEQPPQQQDQHVM
TYDHEDGPVYMAVPSVGSAMSKQEQLSDGATSLENQQLQSTAEFQKIEIQ
TPTTPRYQNAATTPSSTSTSRYHSAPITPSKPTHMEYPSSNGHNSGEDDE
IGAFFKAVSMKIRNAQLEPVAFTELQIDILRVINEALRNHASFLDH
BO05245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 690 | CG8765-PA | 1..690 | 1..690 | 3600 | 100 | Plus |
| CG8765-PC | 688 | CG8765-PC | 1..688 | 1..690 | 3571 | 99.6 | Plus |
| CG8765-PB | 600 | CG8765-PB | 1..600 | 91..690 | 3118 | 100 | Plus |
| CG8765-PB | 600 | CG8765-PB | 229..400 | 42..227 | 207 | 29.1 | Plus |
| CG15365-PC | 821 | CG15365-PC | 261..715 | 210..639 | 183 | 22.5 | Plus |
| CG15365-PA | 821 | CG15365-PA | 261..715 | 210..639 | 183 | 22.5 | Plus |
