Clone BO05246 Report

Search the DGRC for BO05246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:46
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO05246.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO05246.3prime Sequence

919 bp (801 high quality bases) assembled on 2005-12-02

> BO05246.3prime
ATGGTCTAGAAAGCTTGCGGCCATTAGCTCTATGCCCGTCGGATTCCAAG
CGCTCTGCTGCGGGCCCCACCATTGGTCCAGGCAATCGCTCTGCGTTGCC
TGCATCTTGGGCAGCAGCTGGGCTGCTCGCTCCAGCGCCTGTTTCCAGGT
CTGCTGTGATATCTGCGAGCAGACTTTCGGCCAGCTCTTCGAGGCGCTTG
ACGTCGAACTCTTCGTCGACGCCAAGCATGTCTTGTAGAGTAGGCAGAGG
GCCACAACTTTCCAGAGTGAGGCCAGGCTCTTGCTGCTCTTCAGCTGCTC
CGCCAGCAGACGCGCTGACGACTGTGTGTCCACCTGTTGTATACCCTGCG
GCAGAGGGTCAGCTTTGGATGCTGCAGATCCAAGGTTGGTGGACGCACAG
CCCTCAGCGCCTGCGCTGGCGTTGGATTGGCTGATGCATCTGGTGTTGTG
CTGCTGTTGCTGCTTCAGTTCGGCGAGTTCTTGGCGCAGCAGCTCCAGCT
CCGAGTCCAGCTTGTGGTTCTTGGCCAGCAGTGACTCGTTGATGGCCTGC
AGGCTATCGCACTTGTTCTGTAGTATTTCCGTTCTGTCTGTCAGCTCCTT
GATCTCGTAGTCCATCTCCTCCATGCGTGCCTTCTTGCGGTCACGCGATG
TCTGGGCGGCCACACGGTTCTTTAGCTTCTTTCTTTGCACTTTCTCCTCC
CAGGTTAGATGGTCCAGGCGACGCTTCTTGGCCTTGGGCTGGGATGCAGC
CATGTTATCGTCATCCATGTTCGACGAGGATGCGTATCCCGAACTCGAGG
GCGTGGGCGAGGCGGAGGGCGTGGCCGACACCTTCAGCAGAGCTGCCGTA
AGGGGGGCGGGCCGCAATTTGGGCAGATTATTCGATGTGATTGCTGTCCG
CGGCACGGTAATTAGCACT

BO05246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9415-PA 924 Xbp1-RA 21..921 919..19 4505 100 Minus
CG9415-PB 1467 Xbp1-RB 21..542 919..398 2610 100 Minus
CG9415-PB 1467 Xbp1-RB 542..868 345..19 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 349..1249 919..19 4505 100 Minus
Xbp1-RE 2119 CG9415-RE 353..1230 919..19 4150 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144861 679..19 3305 100 Minus
2R 25286936 2R 21143897..21144137 919..679 1205 100 Minus
Blast to na_te.dros performed 2015-02-11 04:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 496..409 172 67.4 Minus
roo 9092 roo DM_ROO 9092bp 1048..1177 540..416 150 61.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 516..411 138 61.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 521..415 132 59.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 523..402 130 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 470..428 127 79.5 Minus

BO05246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:02 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-PA 21..924 16..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:53 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9415-PA 21..924 16..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:43 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 349..1257 11..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:34 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 349..1257 11..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:34 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21143897..21144136 680..919 100 -> Minus
2R 21144201..21144869 11..679 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:43 Download gff for BO05246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031402..17031641 680..919 100 -> Minus
arm_2R 17031706..17032374 11..679 99   Minus

BO05246.5prime Sequence

841 bp (775 high quality bases) assembled on 2005-12-02

> BO05246.5prime
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTG

BO05246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9415-PA 924 Xbp1-RA 1..825 17..841 4125 100 Plus
CG9415-PB 1467 Xbp1-RB 1..542 17..558 2710 100 Plus
CG9415-PB 1467 Xbp1-RB 542..772 611..841 1155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 327..1153 15..841 4135 100 Plus
Xbp1-RE 2119 CG9415-RE 331..1134 15..841 3780 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144765 277..841 2825 100 Plus
2R 25286936 2R 21143875..21144137 15..277 1315 100 Plus
Blast to na_te.dros performed 2015-02-12 01:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 460..547 172 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1048..1177 416..540 150 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 440..545 138 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 435..541 132 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 433..554 130 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 486..528 127 79.5 Plus

BO05246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:03 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:55 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9415-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:40 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 320..1153 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:20 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 320..1153 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:20 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21143868..21144136 9..276 98 -> Plus
2R 21144201..21144765 277..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:40 Download gff for BO05246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031373..17031641 9..276 98 -> Plus
arm_2R 17031706..17032270 277..841 100   Plus

BO05246.complete Sequence

955 bp (955 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ630003

> BO05246.complete
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGCAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCA
GAGCGCTTGGAATCCGACGGGCATAGAGCTAATGGCCGCAAGCTTTCTAG
ACCAT

BO05246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 924 CG9415-PD 1..921 17..937 4605 100 Plus
Xbp1-RE 1497 CG9415-PE 1..570 17..586 2835 99.8 Plus
Xbp1-RE 1497 CG9415-PE 562..898 601..937 1685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 327..1249 15..937 4615 100 Plus
Xbp1-RE 2119 CG9415-RE 331..902 15..586 2845 99.8 Plus
Xbp1-RE 2119 CG9415-RE 894..1230 601..937 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144861 277..937 3305 100 Plus
2R 25286936 2R 21143875..21144137 15..277 1315 100 Plus
Blast to na_te.dros performed 2014-11-28 00:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 460..547 172 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1048..1177 416..540 150 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 440..545 138 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 435..541 132 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 433..554 130 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 486..528 127 79.5 Plus

BO05246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:18 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:59 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 324..1261 9..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:42 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 329..1249 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:18 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RA 324..1261 9..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:51 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 329..1249 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:51 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21143877..21144136 17..276 100 -> Plus
2R 21144201..21144861 277..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:42 Download gff for BO05246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031382..17031641 17..276 100 -> Plus
arm_2R 17031706..17032366 277..939 99   Plus

BO05246.pep Sequence

Translation from 16 to 955

> BO05246.pep
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMAASFLDH

BO05246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-PD 307 CG9415-PD 1..307 1..307 1554 100 Plus
Xbp1-PE 498 CG9415-PE 1..190 1..190 948 100 Plus