Clone Sequence Records
BO05246.3prime Sequence
919 bp (801 high quality bases) assembled on 2005-12-02
> BO05246.3prime
ATGGTCTAGAAAGCTTGCGGCCATTAGCTCTATGCCCGTCGGATTCCAAG
CGCTCTGCTGCGGGCCCCACCATTGGTCCAGGCAATCGCTCTGCGTTGCC
TGCATCTTGGGCAGCAGCTGGGCTGCTCGCTCCAGCGCCTGTTTCCAGGT
CTGCTGTGATATCTGCGAGCAGACTTTCGGCCAGCTCTTCGAGGCGCTTG
ACGTCGAACTCTTCGTCGACGCCAAGCATGTCTTGTAGAGTAGGCAGAGG
GCCACAACTTTCCAGAGTGAGGCCAGGCTCTTGCTGCTCTTCAGCTGCTC
CGCCAGCAGACGCGCTGACGACTGTGTGTCCACCTGTTGTATACCCTGCG
GCAGAGGGTCAGCTTTGGATGCTGCAGATCCAAGGTTGGTGGACGCACAG
CCCTCAGCGCCTGCGCTGGCGTTGGATTGGCTGATGCATCTGGTGTTGTG
CTGCTGTTGCTGCTTCAGTTCGGCGAGTTCTTGGCGCAGCAGCTCCAGCT
CCGAGTCCAGCTTGTGGTTCTTGGCCAGCAGTGACTCGTTGATGGCCTGC
AGGCTATCGCACTTGTTCTGTAGTATTTCCGTTCTGTCTGTCAGCTCCTT
GATCTCGTAGTCCATCTCCTCCATGCGTGCCTTCTTGCGGTCACGCGATG
TCTGGGCGGCCACACGGTTCTTTAGCTTCTTTCTTTGCACTTTCTCCTCC
CAGGTTAGATGGTCCAGGCGACGCTTCTTGGCCTTGGGCTGGGATGCAGC
CATGTTATCGTCATCCATGTTCGACGAGGATGCGTATCCCGAACTCGAGG
GCGTGGGCGAGGCGGAGGGCGTGGCCGACACCTTCAGCAGAGCTGCCGTA
AGGGGGGCGGGCCGCAATTTGGGCAGATTATTCGATGTGATTGCTGTCCG
CGGCACGGTAATTAGCACT
BO05246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9415-PA | 924 | Xbp1-RA | 21..921 | 919..19 | 4505 | 100 | Minus |
CG9415-PB | 1467 | Xbp1-RB | 21..542 | 919..398 | 2610 | 100 | Minus |
CG9415-PB | 1467 | Xbp1-RB | 542..868 | 345..19 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 349..1249 | 919..19 | 4505 | 100 | Minus |
Xbp1-RE | 2119 | CG9415-RE | 353..1230 | 919..19 | 4150 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144861 | 679..19 | 3305 | 100 | Minus |
2R | 25286936 | 2R | 21143897..21144137 | 919..679 | 1205 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 496..409 | 172 | 67.4 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 540..416 | 150 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 516..411 | 138 | 61.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 521..415 | 132 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 523..402 | 130 | 58.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 470..428 | 127 | 79.5 | Minus |
BO05246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:02 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-PA | 21..924 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:53 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9415-PA | 21..924 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:14:43 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 349..1257 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:34 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 349..1257 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:34 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143897..21144136 | 680..919 | 100 | -> | Minus |
2R | 21144201..21144869 | 11..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:14:43 Download gff for
BO05246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031402..17031641 | 680..919 | 100 | -> | Minus |
arm_2R | 17031706..17032374 | 11..679 | 99 | | Minus |
BO05246.5prime Sequence
841 bp (775 high quality bases) assembled on 2005-12-02
> BO05246.5prime
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTG
BO05246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9415-PA | 924 | Xbp1-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG9415-PB | 1467 | Xbp1-RB | 1..542 | 17..558 | 2710 | 100 | Plus |
CG9415-PB | 1467 | Xbp1-RB | 542..772 | 611..841 | 1155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 327..1153 | 15..841 | 4135 | 100 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 331..1134 | 15..841 | 3780 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144765 | 277..841 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 21143875..21144137 | 15..277 | 1315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 460..547 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 416..540 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 440..545 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 435..541 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 433..554 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 486..528 | 127 | 79.5 | Plus |
BO05246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:03 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:55 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9415-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:40:40 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1153 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:20 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1153 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:20 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143868..21144136 | 9..276 | 98 | -> | Plus |
2R | 21144201..21144765 | 277..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:40:40 Download gff for
BO05246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031373..17031641 | 9..276 | 98 | -> | Plus |
arm_2R | 17031706..17032270 | 277..841 | 100 | | Plus |
BO05246.complete Sequence
955 bp (955 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ630003
> BO05246.complete
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGCAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCA
GAGCGCTTGGAATCCGACGGGCATAGAGCTAATGGCCGCAAGCTTTCTAG
ACCAT
BO05246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 924 | CG9415-PD | 1..921 | 17..937 | 4605 | 100 | Plus |
Xbp1-RE | 1497 | CG9415-PE | 1..570 | 17..586 | 2835 | 99.8 | Plus |
Xbp1-RE | 1497 | CG9415-PE | 562..898 | 601..937 | 1685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 327..1249 | 15..937 | 4615 | 100 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 331..902 | 15..586 | 2845 | 99.8 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 894..1230 | 601..937 | 1685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144861 | 277..937 | 3305 | 100 | Plus |
2R | 25286936 | 2R | 21143875..21144137 | 15..277 | 1315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 460..547 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 416..540 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 440..545 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 435..541 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 433..554 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 486..528 | 127 | 79.5 | Plus |
BO05246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:18 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:02:59 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RC | 324..1261 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:42 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 329..1249 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:18 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RA | 324..1261 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:51 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 329..1249 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:51 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143877..21144136 | 17..276 | 100 | -> | Plus |
2R | 21144201..21144861 | 277..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:42 Download gff for
BO05246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031382..17031641 | 17..276 | 100 | -> | Plus |
arm_2R | 17031706..17032366 | 277..939 | 99 | | Plus |
BO05246.pep Sequence
Translation from 16 to 955
> BO05246.pep
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMAASFLDH
BO05246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-PD | 307 | CG9415-PD | 1..307 | 1..307 | 1554 | 100 | Plus |
Xbp1-PE | 498 | CG9415-PE | 1..190 | 1..190 | 948 | 100 | Plus |