Clone BO05247 Report

Search the DGRC for BO05247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptE(var)3-9-RA
Protein status:BO05247.pep: Imported from assembly
Sequenced Size:1798

Clone Sequence Records

BO05247.5prime Sequence

501 bp (444 high quality bases) assembled on 2005-12-02

> BO05247.5prime
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGANGAACACA
T

BO05247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11971-PA 1767 CG11971-RA 1..485 17..501 2406 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 84..569 16..501 2419 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8992332..8992631 501..202 1489 99.7 Minus
3R 32079331 3R 8992673..8992866 209..16 970 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:50:07 has no hits.

BO05247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:05 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1..485 17..501 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:58 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1..485 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:50 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 77..569 10..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:51 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 77..569 10..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:51 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8992677..8992873 10..205 98   Minus
3R 8992332..8992627 206..501 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:50 Download gff for BO05247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4818054..4818349 206..501 99 <- Minus
arm_3R 4818399..4818595 10..205 98   Minus

BO05247.3prime Sequence

476 bp (407 high quality bases) assembled on 2005-12-02

> BO05247.3prime
ATGGTCTAGAAAGCTTGCACCCTTATGCTGCTTAAGATGTCTGTTAAGCT
TAATTTTTAAGTCAAAGGATCTGCCGCAAATGTAGCACGAGATGTACGCT
TTTTCTGGCACCTGTTGGACAGGAGAGCTGTCATTAGAGGTCGCTGAAGT
CCTGCTCTCCTGCTGGGCAGTGCTATCTAATTGAGAAGAAGACTCTAGGA
CGACTCTTTCTTTGGACTCGATGGTTTGCTTCTTGGTTATCTTTGCAATG
GGCGACGTAGGTATTTCCTGCGTGGTCTTTCTCACTAATGACTGGTTGTC
TGAAGAGCGACGCCTCTTTCTTGTCTGTGTGTGAGTGGCCAGCACATGAG
CCTGCAGCTGCTGGGCCTTCTCGAATGTGTCGCTGCAATATGAGCACTTA
GTGACACTTTCAGTTGGCTCGGTTGACGGTGAAGCTACATCTGCTACATC
AAGAACTTCTCCGTTTGCAGGTGGGC

BO05247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11971-PA 1767 CG11971-RA 1307..1764 476..19 2265 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 1391..1848 476..19 2275 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8990933..8991390 19..476 2275 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 05:48:39 has no hits.

BO05247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:04 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1307..1767 18..476 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:56 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1307..1767 18..476 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:26 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1391..1848 19..476 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:58 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1391..1848 19..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:58 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8990933..8991390 19..476 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:26 Download gff for BO05247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4816655..4817112 19..476 99   Plus

BO05247.complete Sequence

1798 bp assembled on 2008-11-10

> BO05247.complete
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACA
TGGCCCGAGTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCC
AAAAATTTTGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGA
TGCGTTAACGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGA
CGGTCGACGATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTC
AGATTTACATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCC
GCTTTACTCGCCGGTTGTGTGTTGTAAGCTATGCTTTTACGAATCCCCCG
ACCAGGATGCGCATATGGAGCACATGCGCCGCACCCATCTCCTCAAGGAC
TGGGAATGCCATATTTGCGGCAAAAAGTTCACAAATGCCCAAGAATCGCG
CATCAAGTTTCACATCAAGTATCACAAGCTACAGCGGCACGTTAAGTGTC
CCGTTTGCGGGTTCATCTGCAGCTCCAAGGAGACTCTCAAGGAGCACAAG
CAGGCAGTGCACGTACGCACAAAGTGCACATACTGTGGAAAAACTGTGAA
AAACGCCACTCTACACGCACATTTGAAAAAGCACTTAGAAGAGGGTGAAG
CCGAACTTGCCCAGCAACTGAAAAAATTGGAGCAGCTTCCAGTTAACCTT
CAATCTCAACATTTATCTTCACTGGAAAGCAGTGTCGCCGAAGTCACCAC
GGCTTCTGAGGGCTCAAATATTCCTGGGGAATCCACTGTTCCTGAAGATT
CTAATGTAACCGAAAACTCCAGTGTTCCTTCAATAGAGACTTCCAATCAT
GCGGACATTCAATGTCCAATGGGCCCACCTGCAAACGGAGAAGTTCCTGA
TGTAGCAGATGTAGCTTCACCGTCAACCGAGCCAACTGAAAGTGTCACTA
AGTGCTCATATTGCAGCGACACATTCGAGAAGGCCCAGCAGCTGCAGGCT
CATGTGCTGGCCACTCACACACAGACAAGAAAGAGGCGTCGCTCTTCAGA
CAACCAGTCATTAGTGAGAAAGACCACGCAGGAAATACCTACGTCGCCCA
TTGCAAAGATAACCAAGAAGCAAACCATCGAGTCCAAAGAAAGAGTCGTC
CTAGAGTCTTCTTCTCAATTAGATAGCACTGCCCAGCAGGAGAGCAGGAC
TTCAGCGACCTCTAATGACAGCTCTCCTGTCCAACAGGTGCCAGAAAAAG
CGTACATCTCGTGCTACATTTGCGGCAGATCCTTTGACTTAAAAATTAAG
CTTAACAGACATCTTAAGCAGCATAAGGGTGCAAGCTTTCTAGACCAT

BO05247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 1767 CG11971-PA 1..1764 17..1780 8820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 84..1848 16..1780 8825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8991790..8992631 1043..202 4210 100 Minus
3R 32079331 3R 8990933..8991623 1780..1090 3455 100 Minus
3R 32079331 3R 8992673..8992866 209..16 970 100 Minus
3R 32079331 3R 8991680..8991727 1091..1044 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:45:58 has no hits.

BO05247.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:52 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 73..1844 10..1780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:46 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 85..1848 17..1782 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:55 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 81..1844 17..1782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:04 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 85..1848 17..1782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:04 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8990931..8991621 1092..1782 99 <- Minus
3R 8991680..8991727 1044..1091 100 <- Minus
3R 8991790..8992627 206..1043 100 <- Minus
3R 8992677..8992865 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:46 Download gff for BO05247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4816653..4817343 1092..1782 99 <- Minus
arm_3R 4817402..4817449 1044..1091 100 <- Minus
arm_3R 4817512..4818349 206..1043 100 <- Minus
arm_3R 4818399..4818587 17..205 100   Minus

BO05247.pep Sequence

Translation from 16 to 1798

> BO05247.pep
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKGASFLDH

BO05247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-PA 588 CG11971-PA 1..588 1..588 3112 100 Plus
CG7386-PA 662 CG7386-PA 323..576 253..499 164 24.9 Plus