Clone Sequence Records
BO05247.5prime Sequence
501 bp (444 high quality bases) assembled on 2005-12-02
> BO05247.5prime
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGANGAACACA
T
BO05247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11971-PA | 1767 | CG11971-RA | 1..485 | 17..501 | 2406 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 84..569 | 16..501 | 2419 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8992332..8992631 | 501..202 | 1489 | 99.7 | Minus |
3R | 32079331 | 3R | 8992673..8992866 | 209..16 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:50:07 has no hits.
BO05247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:05 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1..485 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:58 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1..485 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:50 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 77..569 | 10..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:51 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 77..569 | 10..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:51 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8992677..8992873 | 10..205 | 98 | | Minus |
3R | 8992332..8992627 | 206..501 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:50 Download gff for
BO05247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4818054..4818349 | 206..501 | 99 | <- | Minus |
arm_3R | 4818399..4818595 | 10..205 | 98 | | Minus |
BO05247.3prime Sequence
476 bp (407 high quality bases) assembled on 2005-12-02
> BO05247.3prime
ATGGTCTAGAAAGCTTGCACCCTTATGCTGCTTAAGATGTCTGTTAAGCT
TAATTTTTAAGTCAAAGGATCTGCCGCAAATGTAGCACGAGATGTACGCT
TTTTCTGGCACCTGTTGGACAGGAGAGCTGTCATTAGAGGTCGCTGAAGT
CCTGCTCTCCTGCTGGGCAGTGCTATCTAATTGAGAAGAAGACTCTAGGA
CGACTCTTTCTTTGGACTCGATGGTTTGCTTCTTGGTTATCTTTGCAATG
GGCGACGTAGGTATTTCCTGCGTGGTCTTTCTCACTAATGACTGGTTGTC
TGAAGAGCGACGCCTCTTTCTTGTCTGTGTGTGAGTGGCCAGCACATGAG
CCTGCAGCTGCTGGGCCTTCTCGAATGTGTCGCTGCAATATGAGCACTTA
GTGACACTTTCAGTTGGCTCGGTTGACGGTGAAGCTACATCTGCTACATC
AAGAACTTCTCCGTTTGCAGGTGGGC
BO05247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11971-PA | 1767 | CG11971-RA | 1307..1764 | 476..19 | 2265 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 1391..1848 | 476..19 | 2275 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8990933..8991390 | 19..476 | 2275 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:48:39 has no hits.
BO05247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:04 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1307..1767 | 18..476 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:56 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1307..1767 | 18..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:56:26 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 1391..1848 | 19..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:58 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 1391..1848 | 19..476 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:58 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8990933..8991390 | 19..476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:56:26 Download gff for
BO05247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4816655..4817112 | 19..476 | 99 | | Plus |
BO05247.complete Sequence
1798 bp assembled on 2008-11-10
> BO05247.complete
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACA
TGGCCCGAGTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCC
AAAAATTTTGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGA
TGCGTTAACGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGA
CGGTCGACGATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTC
AGATTTACATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCC
GCTTTACTCGCCGGTTGTGTGTTGTAAGCTATGCTTTTACGAATCCCCCG
ACCAGGATGCGCATATGGAGCACATGCGCCGCACCCATCTCCTCAAGGAC
TGGGAATGCCATATTTGCGGCAAAAAGTTCACAAATGCCCAAGAATCGCG
CATCAAGTTTCACATCAAGTATCACAAGCTACAGCGGCACGTTAAGTGTC
CCGTTTGCGGGTTCATCTGCAGCTCCAAGGAGACTCTCAAGGAGCACAAG
CAGGCAGTGCACGTACGCACAAAGTGCACATACTGTGGAAAAACTGTGAA
AAACGCCACTCTACACGCACATTTGAAAAAGCACTTAGAAGAGGGTGAAG
CCGAACTTGCCCAGCAACTGAAAAAATTGGAGCAGCTTCCAGTTAACCTT
CAATCTCAACATTTATCTTCACTGGAAAGCAGTGTCGCCGAAGTCACCAC
GGCTTCTGAGGGCTCAAATATTCCTGGGGAATCCACTGTTCCTGAAGATT
CTAATGTAACCGAAAACTCCAGTGTTCCTTCAATAGAGACTTCCAATCAT
GCGGACATTCAATGTCCAATGGGCCCACCTGCAAACGGAGAAGTTCCTGA
TGTAGCAGATGTAGCTTCACCGTCAACCGAGCCAACTGAAAGTGTCACTA
AGTGCTCATATTGCAGCGACACATTCGAGAAGGCCCAGCAGCTGCAGGCT
CATGTGCTGGCCACTCACACACAGACAAGAAAGAGGCGTCGCTCTTCAGA
CAACCAGTCATTAGTGAGAAAGACCACGCAGGAAATACCTACGTCGCCCA
TTGCAAAGATAACCAAGAAGCAAACCATCGAGTCCAAAGAAAGAGTCGTC
CTAGAGTCTTCTTCTCAATTAGATAGCACTGCCCAGCAGGAGAGCAGGAC
TTCAGCGACCTCTAATGACAGCTCTCCTGTCCAACAGGTGCCAGAAAAAG
CGTACATCTCGTGCTACATTTGCGGCAGATCCTTTGACTTAAAAATTAAG
CTTAACAGACATCTTAAGCAGCATAAGGGTGCAAGCTTTCTAGACCAT
BO05247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 1767 | CG11971-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 84..1848 | 16..1780 | 8825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8991790..8992631 | 1043..202 | 4210 | 100 | Minus |
3R | 32079331 | 3R | 8990933..8991623 | 1780..1090 | 3455 | 100 | Minus |
3R | 32079331 | 3R | 8992673..8992866 | 209..16 | 970 | 100 | Minus |
3R | 32079331 | 3R | 8991680..8991727 | 1091..1044 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:58 has no hits.
BO05247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:52 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-RA | 73..1844 | 10..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:46 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 85..1848 | 17..1782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:55 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-RA | 81..1844 | 17..1782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:04 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 85..1848 | 17..1782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:04 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8990931..8991621 | 1092..1782 | 99 | <- | Minus |
3R | 8991680..8991727 | 1044..1091 | 100 | <- | Minus |
3R | 8991790..8992627 | 206..1043 | 100 | <- | Minus |
3R | 8992677..8992865 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:46 Download gff for
BO05247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4816653..4817343 | 1092..1782 | 99 | <- | Minus |
arm_3R | 4817402..4817449 | 1044..1091 | 100 | <- | Minus |
arm_3R | 4817512..4818349 | 206..1043 | 100 | <- | Minus |
arm_3R | 4818399..4818587 | 17..205 | 100 | | Minus |
BO05247.pep Sequence
Translation from 16 to 1798
> BO05247.pep
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKGASFLDH
BO05247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-PA | 588 | CG11971-PA | 1..588 | 1..588 | 3112 | 100 | Plus |
CG7386-PA | 662 | CG7386-PA | 323..576 | 253..499 | 164 | 24.9 | Plus |