Clone BO05248 Report

Search the DGRC for BO05248

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:52
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptLmpt-RB
Protein status:BO05248.pep: Imported from assembly
Sequenced Size:1711

Clone Sequence Records

BO05248.3prime Sequence

908 bp (844 high quality bases) assembled on 2005-12-02

> BO05248.3prime
ATGGTCTAGAAAGCTTGCCATCAGCTTCTGCTTGGCACAATCGGGGCACA
GGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTTG
CAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACGA
TATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTGC
ACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTCG
TCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGCA
GGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCCG
AGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTCG
TAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGGT
CCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCACT
GCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCGCGGAAAACTTCGCCG
CAGCCATCGCAGCGGGACGCAAACTGGGCATCGTAGCAGTTTCCACAGTA
GATCTTATCCGCCTTGGCTCCAAACTGCTTGTCCACCAGCGACAGATGGC
ACTTGAAGCACAGGAAACAGGCCTCGTGCCAGTGCTTGTCTTTGTAGGAC
AGATCCTTGGAGTCGATGCCAATGATCTTGTTGCACTCCTCGCACGTATT
GGCGAACACATTCTCGTAGCACTTGATGCAGTACGGATGATCGTCCCGGA
TGACGTAACGCTGTCCGGTGAGGCTCTCGTCGCATTGCCAGCAGCAGAAG
TGTCGGGAGTGCCAGTCCTTGTCCATGGCTTTTGTGTACTCGCCACTGAA
AATTAACT

BO05248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PG 1680 Lmpt-RG 788..1677 908..19 4425 99.8 Minus
CG32171-PH 1677 Lmpt-RH 785..1674 908..19 4425 99.8 Minus
CG32171-PB 1680 Lmpt-RB 788..1677 908..19 4425 99.8 Minus
CG32171-PD 1677 Lmpt-RD 785..1674 908..19 4425 99.8 Minus
CG32171-PC 1020 Lmpt-RC 140..1017 896..19 4365 99.8 Minus
CG32171-PF 861 Lmpt-RF 1..858 876..19 4265 99.8 Minus
CG32171-PA 738 Lmpt-RA 220..735 534..19 2580 100 Minus
CG32171-PE 738 Lmpt-RE 220..735 534..19 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RO 1894 CG42679-RO 109..998 908..19 4435 99.9 Minus
Lmpt-RM 2905 CG42679-RM 1120..2009 908..19 4435 99.9 Minus
Lmpt-RN 2690 CG42679-RN 905..1794 908..19 4435 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16912127..16912330 908..705 1005 99.5 Minus
3L 28110227 3L 16921178..16921367 362..173 950 100 Minus
3L 28110227 3L 16913222..16913399 707..530 890 100 Minus
3L 28110227 3L 16920879..16921053 533..359 875 100 Minus
3L 28110227 3L 16921430..16921591 180..19 795 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 23:53:03 has no hits.

BO05248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:06 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-PB 788..1680 15..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:40:59 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PH 785..1677 15..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:22 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RD 1075..1968 14..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:03 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RN 905..1798 14..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:03 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16912127..16912329 706..908 99 -> Minus
3L 16913224..16913398 531..705 100 -> Minus
3L 16920882..16921051 361..530 100 -> Minus
3L 16921180..16921366 174..360 100 -> Minus
3L 16921437..16921595 14..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:22 Download gff for BO05248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16906324..16906498 531..705 100 -> Minus
arm_3L 16913982..16914151 361..530 100 -> Minus
arm_3L 16914280..16914466 174..360 100 -> Minus
arm_3L 16914537..16914695 14..173 98   Minus
arm_3L 16905227..16905429 706..908 99 -> Minus

BO05248.5prime Sequence

906 bp (805 high quality bases) assembled on 2005-12-02

> BO05248.5prime
GAAGTTATCAGTCGACATGACACCATCGCCGACCAAGGAACTCATGAGTG
CCACACCGACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGT
GCCATTATAAGAGAGGTGGAAGATGGAGTACGGTGTGAGCAATGTAAATC
AGATTGCCCAGGCTTTGCAGCGCACGATTGGAGGAAAACCTGCCAGTCCT
GCAAATGTCCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAAC
GTGCATGAGCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGT
GGAGGCGCGGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCT
CCTCGCGCATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCC
CGGCTGGGCAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCA
GCTGCCCAAACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGC
AGCACGAGGCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCA
CTGGACATAGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCA
CTGTGATAACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGT
TTGTGGAGAGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGC
AACTCGCTACTCGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTA
CTGCGAGCGCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTG
ATGAGTTAATTTCAGTGGCGAGTACACAAAGCCATGGACAGGACTGGCAC
TCCGGACACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACAGCG
TTACGT

BO05248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PG 1680 Lmpt-RG 1..796 17..812 3980 100 Plus
CG32171-PB 1680 Lmpt-RB 1..796 17..812 3980 100 Plus
CG32171-PH 1677 Lmpt-RH 162..793 181..812 3160 100 Plus
CG32171-PD 1677 Lmpt-RD 162..793 181..812 3160 100 Plus
CG32171-PG 1680 Lmpt-RG 827..893 840..906 335 100 Plus
CG32171-PB 1680 Lmpt-RB 827..893 840..906 335 100 Plus
CG32171-PH 1677 Lmpt-RH 824..890 840..906 335 100 Plus
CG32171-PD 1677 Lmpt-RD 824..890 840..906 335 100 Plus
CG32171-PF 861 Lmpt-RF 8..74 840..906 335 100 Plus
CG32171-PC 1020 Lmpt-RC 167..233 840..906 335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 2905 CG42679-RM 333..1225 17..906 4390 99.7 Plus
Lmpt-RB 2916 CG32171-RB 344..1236 17..906 4390 99.7 Plus
Lmpt-RG 3028 CG32171-RG 456..1348 17..906 4390 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16896802..16897180 182..560 1895 100 Plus
3L 28110227 3L 16897380..16897628 557..805 1245 100 Plus
3L 28110227 3L 16883917..16884005 96..184 445 100 Plus
3L 28110227 3L 16866866..16866947 17..98 410 100 Plus
3L 28110227 3L 16912134..16912232 810..906 395 98 Plus
Blast to na_te.dros performed on 2015-02-11 15:50:29 has no hits.

BO05248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:07 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-PG 1..893 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:00 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PB 1..893 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:35:53 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 452..1348 9..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:57 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 452..1348 9..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:57 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16912129..16912232 806..906 97   Plus
3L 16896804..16897180 184..560 100 -> Plus
3L 16866862..16866946 9..97 95 -> Plus
3L 16883919..16884004 98..183 100 -> Plus
3L 16897384..16897628 561..805 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:35:53 Download gff for BO05248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16859962..16860046 9..97 95 -> Plus
arm_3L 16877019..16877104 98..183 100 -> Plus
arm_3L 16889904..16890280 184..560 100 -> Plus
arm_3L 16890484..16890728 561..805 100 -> Plus
arm_3L 16905229..16905332 806..906 97   Plus

BO05248.complete Sequence

1711 bp assembled on 2008-08-14

GenBank Submission: FJ630004

> BO05248.complete
GAAGTTATCAGTCGACATGACACCATCGCCGACCAAGGAACTCATGAGTG
CCACACCGACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGT
GCCATTATAAGAGAGGTGGAAGATGGAGTACGGTGTGAGCAATGTAAATC
AGATTGCCCAGGCTTTGCAGCGCACGATTGGAGGAAAACCTGCCAGTCCT
GCAAATGTCCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAAC
GTGCATGAGCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGT
GGAGGCGCGGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCT
CCTCGCGCATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCC
CGGCTGGGCAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCA
GCTGCCCAAACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGC
AGCACGAGGCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCA
CTGGACATAGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCA
CTGTGATAACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGT
TTGTGGAGAGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGC
AACTCGCTACTCGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTA
CTGCGAGCGCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTG
ATGAGTTAATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGG
CACTCCGGACACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACA
GCGTTACGTCATCCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGA
ATGTGTTCGCCAATACGTGCGAGGAGTGCAACAAGATCATTGGCATCGAC
TCCAAGGATCTGTCCTACAAAGACAAGCACTGGCACGAGGCCTGTTTCCT
GTGCTTCAAGTGCCATCTGTCGCTGGTGGACAAGCAGTTTGGAGCCAAGG
CGGATAAGATCTACTGTGGAAACTGCTACGATGCCCAGTTTGCGTCCCGC
TGCGATGGCTGCGGCGAAGTTTTCCGCGCAGGCACCAAGAAAATGGAGTA
TAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGTCTGCAAGA
CGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGATCTATTGC
GCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAGTGCAATAA
GGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTGGCATCGCG
AGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCCAGCGATTC
ACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGCGAGCTCTT
TGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCATTGGCGGCA
CACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACTGCTTTGTG
TGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATCACCGACGG
ACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGATGGCAAGCT
TTCTAGACCAT

BO05248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 1680 CG42679-PM 1..1677 17..1693 8385 100 Plus
Lmpt-RB 1680 CG42679-PB 1..1677 17..1693 8385 100 Plus
Lmpt-RG 1680 CG42679-PG 1..1677 17..1693 8385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 2905 CG42679-RM 333..2009 17..1693 8385 100 Plus
Lmpt-RB 2916 CG32171-RB 344..2020 17..1693 8385 100 Plus
Lmpt-RG 3028 CG32171-RG 456..2132 17..1693 8385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16896802..16897180 182..560 1895 100 Plus
3L 28110227 3L 16897380..16897628 557..805 1245 100 Plus
3L 28110227 3L 16912127..16912330 804..1007 1020 100 Plus
3L 28110227 3L 16921178..16921367 1350..1539 950 100 Plus
3L 28110227 3L 16913222..16913399 1005..1182 890 100 Plus
3L 28110227 3L 16920879..16921053 1179..1353 875 100 Plus
3L 28110227 3L 16921430..16921591 1532..1693 795 99.4 Plus
3L 28110227 3L 16883917..16884005 96..184 445 100 Plus
3L 28110227 3L 16866866..16866947 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:50:25 has no hits.

BO05248.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:29 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RB 335..2019 9..1698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:08 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 456..2132 17..1695 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:35 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RB 339..2015 17..1695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:45 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 456..2132 17..1695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:45 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16921180..16921366 1352..1538 100 -> Plus
3L 16921437..16921591 1539..1695 98   Plus
3L 16866866..16866946 17..97 100 -> Plus
3L 16883919..16884004 98..183 100 -> Plus
3L 16896804..16897180 184..560 100 -> Plus
3L 16897384..16897628 561..805 100 -> Plus
3L 16912129..16912329 806..1006 100 -> Plus
3L 16913224..16913398 1007..1181 100 -> Plus
3L 16920882..16921051 1182..1351 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:08 Download gff for BO05248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16913982..16914151 1182..1351 100 -> Plus
arm_3L 16914280..16914466 1352..1538 100 -> Plus
arm_3L 16914537..16914691 1539..1695 98   Plus
arm_3L 16859966..16860046 17..97 100 -> Plus
arm_3L 16877019..16877104 98..183 100 -> Plus
arm_3L 16889904..16890280 184..560 100 -> Plus
arm_3L 16890484..16890728 561..805 100 -> Plus
arm_3L 16905229..16905429 806..1006 100 -> Plus
arm_3L 16906324..16906498 1007..1181 100 -> Plus

BO05248.pep Sequence

Translation from 16 to 1711

> BO05248.pep
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLMASFLDH

BO05248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-PM 559 CG42679-PM 1..559 1..559 3166 100 Plus
Lmpt-PB 559 CG32171-PB 1..559 1..559 3166 100 Plus
Lmpt-PG 559 CG32171-PG 1..559 1..559 3166 100 Plus
Lmpt-PN 529 CG42679-PN 26..529 56..559 2867 100 Plus
Lmpt-PD 558 CG32171-PD 55..558 56..559 2867 100 Plus