Clone Sequence Records
BO05251.3prime Sequence
871 bp (805 high quality bases) assembled on 2005-12-02
> BO05251.3prime
ATGGTCTAGAAAGCTTGCCTTTAGCTTTAGCTTTTGATCTCCATCCCGAT
GCTTGCCCAGAAAGTGCCGCTTCAGATGATGTTTCTCCCGGAAGTCCTGC
AGGCAGATGGAACACTTGTAGGGCCGTTCATCCGAGTGGCGTCGTCGGTG
CTTCGCCAGGTTATTGTTGTCCGAAAAAGTCTTGGGGCAGTGGGGGCATT
GGTAGGGCTTCTCGCCCGTGTGTATGCGGATGTGGACCTTAAGGGCCTGC
TTGGAACGGAAGTTGGACACGCAGAAGGGACAGGCATGCGGCCGTTCGCC
CATGTGCGCATGGATGTGCACCTTGAGGGCCGACTTGTTGAAGAATCCCG
TTTGGCAGTATGAACATTTGTGGGGTCCGTTTCCCTGTTTCGATTCCGCG
TGGATCAACAGGTGCGCCTTGAGGTTTTGTTCGCGAGTAAAGGCCTGCTG
ACAGTGGGGGCACTGAAAGGGCGAACGCTCCTGCATATCCTTGCATTTGT
GGCTGTCCAGGCTCTGGGTGCTTGAAAAGACCTTTAAGCATTCCGGGCAC
TCGACGGTGGAATTGCTATTGCGATAACATTGGTGGTTATCCAGATCGGC
CTTGAACAGAAAACGCTCTTCGCAGTTTTGGCATACGTGTGAATTGCTGT
GAACCTTCATGTGGTCCAGGAGGTTTATTTGGCGCTTGAACTGTTTGATG
CATAGTTCGCATTTGAAAGTCTGATTCTTTATACTCCTTAGCTGTCTGCC
AGCTCTACTGGTTGTTATGGAAGACTTGGTTGTTCTGGAAGCTGTTTGAT
GTGTCTTTTTAATTTCCTTGTTGAGTTTCTTCTTTGCTTCCAGATTGCCT
TTGTCTGGGTTCTCAATGAAT
BO05251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-PA | 1152 | CG8319-RA | 297..1149 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-RA | 1295 | CG8319-RA | 374..1226 | 871..19 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9627971..9628607 | 655..19 | 3185 | 100 | Minus |
| 3R | 32079331 | 3R | 9627694..9627910 | 871..655 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:47:56 has no hits.
BO05251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:08 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-PA | 297..1152 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:01 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-PA | 297..1152 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:01:21 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 374..1235 | 11..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:14:45 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 374..1235 | 11..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:14:45 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9627694..9627909 | 656..871 | 100 | -> | Minus |
| 3R | 9627971..9628616 | 11..655 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:01:21 Download gff for
BO05251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5453416..5453631 | 656..871 | 100 | -> | Minus |
| arm_3R | 5453693..5454338 | 11..655 | 99 | | Minus |
BO05251.5prime Sequence
943 bp (790 high quality bases) assembled on 2005-12-02
> BO05251.5prime
GAAGTTATCAGTCGACATGGAGGACCTGTGTCGAATTTGTGGCGGGGCCT
CGGAAAACATGCTGGGCATTTTCGACGATCAGGTGGAAGAATATGTTGAT
GGAGCCAAGCTCGCTGAGATGGTGAAGACATGTGCCGACGTGCAGTTGGA
TCCCGACGACGCTATGCCCCAAAAAATGTGCATTTCCTGTGTCCACGATG
CACGAACTGCTTACGGATTCAAGCGAAGATGCGAAGAGAACTACAAGAAG
TTCTATTTGGCGATATTAAATGGGCAGGTCATCAAGGACGAGCCCAACGA
GGAGGATTTCCTATTCATTGAGAACCCAGACAAAGGCAATCTGGAAGCAA
AGAAGAAACTCAACAAGGAAATTAAAAAGACACATCAAACAGCTTCCAGA
ACAACCAAGTCTTCCATAACAACCAGTAGAGCTGGCAGACAGCTAAGGAG
TATAAAGAATCAGACTTTCAAATGCGAACTATGCATCAAACAGTTCAAGC
GCCAAATAAACCTCCTGGACCACATGAAGGTTCACAGCAATTCACACGTA
TGCCAAAACTGCGAAGAGCGTTTTCTGTTCAAGGCCGATCTGGATAACCA
CCAATGTTATCGCAATAGCAATTCCACCGTCGAGTGCCCGGAATGCTTAA
AGGTCTTTTCAAGCACCCAGAGCCTGGACAGCCACAAATGCAAGGATATG
CAGGAGCGTTCGCCCTTTCAGTGCCCCCACTGTCAGCAGGCCTTTACTCG
CGAACAAAACCTCAAGGCGCACCTGTTGATCCACGCGGAATCGAAACAGG
GAAACGGACCCCACAAATGTTCATACTGCCAAACGGGATTCTTCAACAAG
TCGGCCCTCAAGGTGCACATCCATGCGCACATGGGCGAACGGCCGCATGC
CTGTCCCCTCTGCGTGTCCAACTTCCCGTTCCAGCAGGGCCTT
BO05251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-PA | 1152 | CG8319-RA | 1..910 | 17..926 | 4525 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-RA | 1295 | CG8319-RA | 78..1004 | 17..943 | 4560 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9627398..9627910 | 17..529 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 9627971..9628385 | 529..943 | 1985 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:38:55 has no hits.
BO05251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:20:09 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:41:03 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:10 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1004 | 3..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:39:46 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1004 | 3..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:39:46 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9627389..9627909 | 3..528 | 99 | -> | Plus |
| 3R | 9627971..9628385 | 529..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:10 Download gff for
BO05251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5453111..5453631 | 3..528 | 99 | -> | Plus |
| arm_3R | 5453693..5454107 | 529..943 | 99 | | Plus |
BO05251.complete Sequence
1183 bp (1183 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ630005
> BO05251.complete
GAAGTTATCAGTCGACATGGAGGACCTGTGTCGAATTTGTGGCGGGGCCT
CGGAAAACATGCTGGGCATTTTCGACGATCAGGTGGAAGAATATGTTGAT
GGAGCCAAGCTCGCTGAGATGGTGAAGACATGTGCCGACGTGCAGTTGGA
TCCCGACGACGCTATGCCCCAAAAAATGTGCATTTCCTGTGTCCACGATG
CACGAACTGCTTACGGATTCAAGCGAAGATGCGAAGAGAACTACAAGAAG
TTCTATTTGGCGATATTAAATGGGCAGGTCATCAAGGACGAGCCCAACGA
GGAGGATTTCCTATTCATTGAGAACCCAGACAAAGGCAATCTGGAAGCAA
AGAAGAAACTCAACAAGGAAATTAAAAAGACACATCAAACAGCTTCCAGA
ACAACCAAGTCTTCCATAACAACCAGTAGAGCTGGCAGACAGCTAAGGAG
TATAAAGAATCAGACTTTCAAATGCGAACTATGCATCAAACAGTTCAAGC
GCCAAATAAACCTCCTGGACCACATGAAGGTTCACAGCAATTCACACGTA
TGCCAAAACTGCGAAGAGCGTTTTCTGTTCAAGGCCGATCTGGATAACCA
CCAATGTTATCGCAATAGCAATTCCACCGTCGAGTGCCCGGAATGCTTAA
AGGTCTTTTCAAGCACCCAGAGCCTGGACAGCCACAAATGCAAGGATATG
CAGGAGCGTTCGCCCTTTCAGTGCCCCCACTGTCAGCAGGCCTTTACTCG
CGAACAAAACCTCAAGGCGCACCTGTTGATCCACGCGGAATCGAAACAGG
GAAACGGACCCCACAAATGTTCATACTGCCAAACGGGATTCTTCAACAAG
TCGGCCCTCAAGGTGCACATCCATGCGCACATGGGCGAACGGCCGCATGC
CTGTCCCTTCTGCGTGTCCAACTTCCGTTCCAAGCAGGCCCTTAAGGTCC
ACATCCGCATACACACGGGCGAGAAGCCCTACCAATGCCCCCACTGCCCC
AAGACTTTTTCGGACAACAATAACCTGGCGAAGCACCGACGACGCCACTC
GGATGAACGGCCCTACAAGTGTTCCATCTGCCTGCAGGACTTCCGGGAGA
AACATCATCTGAAGCGGCACTTTCTGGGCAAGCATCGGGATGGAGATCAA
AAGCTAAAGCTAAAGGCAAGCTTTCTAGACCAT
BO05251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-RA | 1152 | CG8319-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-RA | 1295 | CG8319-RA | 78..1226 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9627971..9628607 | 529..1165 | 3185 | 100 | Plus |
| 3R | 32079331 | 3R | 9627398..9627910 | 17..529 | 2565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:07:38 has no hits.
BO05251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:35:19 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 1..1152 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:03:01 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1235 | 3..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:00 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 78..1226 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:35:19 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 69..1235 | 3..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:44 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8319-RA | 78..1226 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:44 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9627398..9627909 | 17..528 | 100 | -> | Plus |
| 3R | 9627971..9628607 | 529..1167 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:00 Download gff for
BO05251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5453120..5453631 | 17..528 | 100 | -> | Plus |
| arm_3R | 5453693..5454329 | 529..1167 | 99 | | Plus |
BO05251.pep Sequence
Translation from 16 to 1183
> BO05251.pep
MEDLCRICGGASENMLGIFDDQVEEYVDGAKLAEMVKTCADVQLDPDDAM
PQKMCISCVHDARTAYGFKRRCEENYKKFYLAILNGQVIKDEPNEEDFLF
IENPDKGNLEAKKKLNKEIKKTHQTASRTTKSSITTSRAGRQLRSIKNQT
FKCELCIKQFKRQINLLDHMKVHSNSHVCQNCEERFLFKADLDNHQCYRN
SNSTVECPECLKVFSSTQSLDSHKCKDMQERSPFQCPHCQQAFTREQNLK
AHLLIHAESKQGNGPHKCSYCQTGFFNKSALKVHIHAHMGERPHACPFCV
SNFRSKQALKVHIRIHTGEKPYQCPHCPKTFSDNNNLAKHRRRHSDERPY
KCSICLQDFREKHHLKRHFLGKHRDGDQKLKLKASFLDH
BO05251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8319-PA | 383 | CG8319-PA | 1..383 | 1..383 | 2103 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 1..346 | 1..374 | 505 | 29.8 | Plus |
| crol-PC | 756 | CG14938-PC | 202..430 | 143..373 | 448 | 36.3 | Plus |
| crol-PB | 891 | CG14938-PB | 408..636 | 143..373 | 448 | 36.3 | Plus |
| crol-PH | 686 | CG14938-PH | 202..431 | 143..373 | 446 | 36.2 | Plus |
| crol-PC | 756 | CG14938-PC | 255..521 | 115..375 | 383 | 32.4 | Plus |
| crol-PH | 686 | CG14938-PH | 183..370 | 177..368 | 376 | 35.9 | Plus |
| crol-PH | 686 | CG14938-PH | 237..485 | 124..364 | 364 | 31.9 | Plus |
| crol-PC | 756 | CG14938-PC | 180..313 | 231..368 | 296 | 39.1 | Plus |
| crol-PC | 756 | CG14938-PC | 179..285 | 262..368 | 241 | 38.3 | Plus |
| crol-PH | 686 | CG14938-PH | 179..286 | 262..368 | 229 | 38 | Plus |
| crol-PH | 686 | CG14938-PH | 312..481 | 115..278 | 178 | 25.3 | Plus |
